bifunctional aspartokinase/homoserine dehydrogenase 1	1.1.1.3	thrA	aspartate kinase	2.7.2.4, 1.1.1.3	CDS	Aspartokinase / Homoserine dehydrogenase	2.7.2.4, 1.1.1.3		base_ec-d	base_ec-d	base_ec	
homoserine kinase	2.7.1.39	thrB	homoserine kinase (EC 2.7.1.39)	2.7.1.39	CDS	Homoserine kinase	2.7.1.39		base_tigr	base_ec	base_ec	
threonine synthase	4.2.3.1	thrC	L-threonine synthase (EC 4.2.3.1)	4.2.3.1	CDS	Threonine synthase	4.2.3.1		base_tigr	base_ec	base_ec	
conserved hypothetical protein						FIG00638853: hypothetical protein			base_one HP	base_one HP	base_one miss	
			Protein of unknown function (DUF2502).		CDS				base_one miss	base_both miss	base_one miss	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	UPF0246 protein YaaA			base_one HP	base_one HP	0	
amino acid carrier family protein		agcS	amino acid carrier protein		CDS	Putative alanine/glycine transport protein			base_tigr	0	0	
transaldolase	2.2.1.2	tal	transaldolase (EC 2.2.1.2)	2.2.1.2	CDS	Transaldolase	2.2.1.2		base_tigr	base_ec	base_ec	
molybdopterin adenylyltransferase		mog	molybdopterin adenylyltransferase	2.7.7.75	CDS	"Molybdopterin biosynthesis Mog protein, molybdochelatase"			base_lit-s	0	0	
inner membrane protein yaaH		yaaH	Predicted membrane protein		CDS	YaaH protein			gs-sh	gs-sh	map	
ubiquinol-cytochrome C chaperone family protein			Uncharacterized protein conserved in bacteria		CDS	Putative oxidoreductase			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2541).		CDS	FIG00638537: hypothetical protein			base_one HP	base_one HP	lit-s	
chaperone protein DnaK		dnaK	chaperone protein DnaK		CDS	Chaperone protein DnaK			base_lit-s	lit-s	lit-s	
chaperone protein DnaJ		dnaJ	chaperone protein DnaJ		CDS	Chaperone protein DnaJ			base_lit-s	lit-s	lit-s	
transposase DDE domain protein			FOG: Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
			Hok/gef family.		CDS				base_one miss	base_both miss	base_one miss	
									base_both miss	base_both miss	base_both miss	
na+/H+ antiporter NhaA		nhaA	sodium/proton antiporter, NhaA family (TC 2.A.33.1.1)		CDS	Na+/H+ antiporter NhaA type			base_tigr	lit-s	gs-sh	
transcriptional activator protein nhaR		nhaR	Transcriptional regulator		CDS	Transcriptional activator NhaR			gs-sh	lit-s	map	
putative transposase			Transposase and inactivated derivatives, IS1 family		CDS	Mobile element protein			0	0	0	
			Transposase and inactivated derivatives		CDS				base_one miss	base_both miss	base_one miss	
ribosomal protein S20		rpsT	SSU ribosomal protein S20P		CDS	SSU ribosomal protein S20p			base_tigr	map	lit-s	
riboflavin biosynthesis protein RibF	2.7.1.26	ribF	FMN adenylyltransferase/riboflavin kinase	2.7.1.26, 2.7.7.2,2.7.7.2, 2.7.1.26	CDS	Riboflavin kinase / FMN adenylyltransferase	2.7.1.26, 2.7.7.2		base_tigr	base_ec-d	base_ec-d	
isoleucine--tRNA ligase	6.1.1.5	ileS	Isoleucyl-tRNA synthetase (EC 6.1.1.5)	6.1.1.5	CDS	Isoleucyl-tRNA synthetase	6.1.1.5		base_tigr	base_ec	base_ec	
signal peptidase II	3.4.23.36	lspA	signal peptidase II (EC:3.4.23.36). Aspartic peptidase. MEROPS family A08	3.4.23.36	CDS	Lipoprotein signal peptidase	3.4.23.36		base_tigr	base_ec	base_ec	
FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase	5.2.1.8	fkpB	FKBP-type peptidyl-prolyl cis-trans isomerases 2	5.2.1.8	CDS	FKBP-type peptidyl-prolyl cis-trans isomerase SlpA	5.2.1.8		base_ec	base_ec	base_ec	
4-hydroxy-3-methylbut-2-enyl diphosphate reductase	1.17.1.2	ispH	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	1.17.1.2	CDS	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	1.17.1.2		base_tigr	base_lit-s	base_ec	
non-specific ribonucleoside hydrolase rihC	3.2.-.-	rihC	Inosine-uridine nucleoside N-ribohydrolase	3.2.-	CDS	Inosine-uridine preferring nucleoside hydrolase	3.2.2.1		gs-sh	gs-sh	map	
dihydrodipicolinate reductase	1.3.1.26	dapB	dihydrodipicolinate reductase (EC 1.3.1.26)	1.3.1.26	CDS	Dihydrodipicolinate reductase	1.3.1.26		base_tigr	base_ec	base_ec	
carbamoyl-phosphate synthase small chain	6.3.5.5	carA	carbamoyl-phosphate synthase, small subunit	6.3.5.5	CDS	Carbamoyl-phosphate synthase small chain	6.3.5.5		base_ec	base_ec	base_ec	
carbamoyl-phosphate synthase large chain	6.3.5.5	carB	carbamoyl-phosphate synthase, large subunit	6.3.5.5	CDS	Carbamoyl-phosphate synthase large chain	6.3.5.5		base_ec	base_ec	base_ec	
putative hypothe						orf; Unknown function			base_one miss	0	base_one miss	
conserved hypothetical protein			Protein of unknown function (DUF1401).		CDS	Transcriptional activatory protein CaiF			base_one HP	base_one HP	0	
bacterial transferase hexapeptide family protein			Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily		CDS	Carnitine operon protein CaiE			0	0	0	
carnitinyl-CoA dehydratase	4.2.1.-	caiD	Enoyl-CoA hydratase/carnithine racemase	4.2.1.-	CDS	Carnitine racemase / Carnitinyl-CoA dehydratase	5.-.-.-, 4.2.1.-		gs-sh	0	0	
AMP-binding enzyme family protein			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	Crotonobetaine carnitine-CoA ligase	6.3.2.-		pfam-sh	0	0	
crotonobetainyl-CoA:carnitine CoA-transferase	2.8.3.-	caiB	Predicted acyl-CoA transferases/carnitine dehydratase	2.8.3.-	CDS	Crotonobetainyl-CoA:carnitine CoA-transferase	2.8.3.-		gs-sh	lit-s	map	
crotonobetainyl-CoA dehydrogenase	1.3.99.-	caiA	Acyl-CoA dehydrogenases	1.3.99.-	CDS	Crotonobetainyl-CoA dehydrogenase	1.3.99.-		gs-sh	lit-s	map	
L-carnitine/gamma-butyrobetaine antiporter		caiT	choline/carnitine/betaine transport		CDS	L-carnitine/gamma-butyrobetaine antiporter			gs-sh	base_lit-s	map	
electron transfer flavodomain protein			electron transfer flavoprotein beta subunit		CDS	"Electron transfer flavoprotein, beta subunit FixA"			0	0	gs-sh	
electron transfer flavodomain protein			electron transfer flavoprotein alpha subunit apoprotein		CDS	"Electron transfer flavoprotein, alpha subunit FixB"			0	0	gs-sh	
FAD binding domain protein			Dehydrogenases (flavoproteins)	1.5.5.-	CDS	Probable electron transfer flavoprotein-quinone oxidoreductase FixC	1.5.5.-		0	0	gs-sh	
putative ferredoxin			Ferredoxin-like protein		CDS	Ferredoxin-like protein FixX			0	0	gs-sh	
sugar (and other) transporter family protein			Sugar phosphate permease		CDS	Putative metabolite transport protein yaaU			0	0	gs-sh	
glutathione-regulated potassium-efflux system ancillary protein kefF		kefF	Kef-type potassium/proton antiporter accessory protein, CPA2 family (TC 2.A.37.1)		CDS	Glutathione-regulated potassium-efflux system ancillary protein KefF			gs-sh	lit-s	map	
glutathione-regulated potassium-efflux system protein kefC		kefC	Kef-type potassium/proton antiporter, CPA2 family (TC 2.A.37.1)		CDS	Glutathione-regulated potassium-efflux system protein KefC			gs-sh	lit-s	map	
dihydrofolate reductase	1.5.1.3	folA	dihydrofolate reductase (EC 1.5.1.3)	1.5.1.3	CDS	Dihydrofolate reductase	1.5.1.3		base_ec	base_ec	base_ec	
bis	3.6.1.41	apaH	Bis(5'nucleosyl)-tetraphosphatase, ApaH	3.6.1.41	CDS	"Bis(5'-nucleosyl)-tetraphosphatase, symmetrical"	3.6.1.41		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Uncharacterized protein affecting Mg2+/Co2+ transport		CDS	ApaG protein			base_one HP	base_one HP	0	
dimethyladenosine transferase	2.1.1.-	ksgA	dimethyladenosine transferase	2.1.1.182,2.1.1.-	CDS	"SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase ## SSU rRNA m6,m6-A1518-1519"	2.1.1.182		base_lit-s	gs-sh	gs-sh	
4-hydroxythreonine-4-phosphate dehydrogenase	1.1.1.262	pdxA	4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	1.1.1.262	CDS	4-hydroxythreonine-4-phosphate dehydrogenase	1.1.1.262		base_tigr	base_lit-s	base_ec	
surA N-terminal domain protein			periplasmic chaperone for outer membrane proteins SurA	5.2.1.8	CDS	Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA)	5.2.1.8		gs-sh	gs-sh	base_ec	
LPS-assembly protein lptD		lptD	Organic solvent tolerance protein OstA		CDS	"Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor"			gs-sh	0	0	
dnaJ-like protein DjlA		djlA	DnaJ-domain-containing proteins 1		CDS	DnaJ-like protein DjlA			gs-sh	lit-s	pfam-sh	
putative undecaprenyl pyrophosphate phosphatase [multifunctional]			hypothetical protein		CDS	FIG00638467: hypothetical protein			base_one HP	0	base_one HP	
hypothetical protein			hypothetical protein		CDS	hypothetical protein			base_lit-s	base_lit-s	base_lit-s	
pseudouridine synthase, RluA family protein	5.4.99.-		ribosomal large subunit pseudouridine synthase A	5.4.99.28, 5.4.99.29,5.4.99.-	CDS	Ribosomal large subunit pseudouridine synthase A	4.2.1.70		base_tigr	gs-sh	lit-s	
RNA polymerase-associated protein rapA	3.6.4.-	rapA	Superfamily II DNA/RNA helicases, SNF2 family	3.6.4.-	CDS	RNA polymerase associated protein RapA	3.6.1.-		gs-sh	0	0	
DNA polymerase II	2.7.7.7	polB	DNA polymerase elongation subunit (family B)	2.7.7.7	CDS	DNA polymerase II	2.7.7.7		base_ec	base_lit-s	base_ec	
L-ribulose-5-phosphate 4-epimerase	5.1.3.4	araD	L-ribulose 5-phosphate 4-epimerase (EC 5.1.3.4)	5.1.3.4	CDS	L-ribulose-5-phosphate 4-epimerase	5.1.3.4		base_tigr	base_lit-s	base_ec	
L-arabinose isomerase	5.3.1.4	araA	L-arabinose isomerase (EC 5.3.1.4)	5.3.1.4	CDS	L-arabinose isomerase	5.3.1.4		base_ec	base_lit-s	base_ec	
L-ribulokinase	2.7.1.16	araB	L-ribulokinase (EC 2.7.1.16)	2.7.1.16	CDS	Ribulokinase	2.7.1.16		base_tigr	base_ec	base_ec	
arabinose operon regulatory protein		araC	transcriptional regulator, AraC family		CDS	Arabinose operon regulatory protein			gs-sh	lit-s	map	
inner membrane protein yabI		yabI	Uncharacterized membrane-associated protein		CDS	DedA family inner membrane protein YabI			gs-sh	gs-sh	gs-sh	
thiamine ABC transporter, ATP-binding protein	3.6.3.-	thiQ	thiamine ABC transporter, ATP-binding protein		CDS	"Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ"			base_lit-s	gs-sh	gs-sh	
thiamine/thiamine pyrophosphate ABC transporter, permease protein		thiP	thiamine ABC transporter, permease protein		CDS	"Thiamin ABC transporter, transmembrane component"			base_tigr	0	0	
thiamin/thiamine pyrophosphate ABC transporter, thiamin/thiamine pyrophospate-binding protein		thiB	thiamine ABC transporter, periplasmic binding protein		CDS	"Thiamin ABC transporter, substrate-binding component"			gs-sh	0	0	
HTH-type transcriptional regulator sgrR		sgrR	ABC-type uncharacterized transport system, periplasmic component		CDS	"SgrR, sugar-phosphate stress, transcriptional activator of SgrS small RNA"			gs-sh	0	0	
									base_both miss	base_both miss	base_both miss	
sugar efflux transporter A		setA	sugar efflux transporter		CDS	Putative transport protein			gs-sh	0	0	
3-isopropylmalate dehydratase small subunit	4.2.1.33	leuD	3-isopropylmalate dehydratase, small subunit	4.2.1.33, 4.2.1.35	CDS	3-isopropylmalate dehydratase small subunit	4.2.1.33		base_ec-d	base_lit-s	base_ec-d	
3-isopropylmalate dehydratase large subunit	4.2.1.33	leuC	3-isopropylmalate dehydratase, large subunit	4.2.1.33, 4.2.1.35,4.2.1.33	CDS	3-isopropylmalate dehydratase large subunit	4.2.1.33		base_ec-d	base_lit-s	base_ec-d	
3-isopropylmalate dehydrogenase	1.1.1.85	leuB	3-isopropylmalate dehydrogenase	1.1.1.85	CDS	3-isopropylmalate dehydrogenase	1.1.1.85		base_lit-s	base_lit-s	base_lit-s	
2-isopropylmalate synthase	2.3.3.13	leuA	2-isopropylmalate synthase (EC 2.3.3.13)	2.3.3.13	CDS	2-isopropylmalate synthase	2.3.3.13		base_tigr	base_lit-s	base_ec	
putative HTH-type transcriptional regulator leuO			Transcriptional regulator		CDS	Probable transcriptional activator for leuABCD operon			gs-sh	0	0	
acetolactate synthase, large subunit, biosynthetic type	2.2.1.6	ilvB	acetolactate synthase, large subunit (EC 2.2.1.6)	2.2.1.6	CDS	Acetolactate synthase large subunit	2.2.1.6		base_tigr	base_ec	base_ec	
acetolactate synthase, small subunit	2.2.1.6	ilvN	acetolactate synthase, small subunit (EC 2.2.1.6)	2.2.1.6	CDS	Acetolactate synthase small subunit	2.2.1.6		base_tigr	base_ec	base_ec	
fructose repressor		fruR	transcriptional regulator, LacI family		CDS	"Fructose repressor FruR, LacI family"			gs-sh	gs-sh	pfam-sh	
mraZ family protein			mraZ protein		CDS	Cell division protein MraZ			lit-s	gs-sh	gs-sh	
S-adenosyl-methyltransferase MraW	2.1.1.-	mraW	S-adenosyl-methyltransferase MraW	2.1.1.199	CDS	rRNA small subunit methyltransferase H			base_lit-s	gs-sh	gs-sh	
cell division protein FtsL		ftsL	cell division protein FtsL		CDS	Cell division protein FtsL			base_lit-s	lit-s	lit-s	
peptidoglycan synthase ftsI	2.4.1.129	ftsI	peptidoglycan synthetase FtsI (EC 2.4.1.129)	2.4.1.129	CDS	Cell division protein FtsI [Peptidoglycan synthetase]	2.4.1.129		base_ec	base_ec	base_ec	
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase	6.3.2.13	murE	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	6.3.2.13	CDS	"UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase"	6.3.2.13		base_ec	base_ec	base_ec	
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase	6.3.2.10	murF	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10)	6.3.2.10	CDS	"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase"	6.3.2.10		base_ec	base_ec	base_ec	
phospho-N-acetylmuramoyl-pentapeptide-transferase	2.7.8.13	mraY	Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	2.7.8.13	CDS	Phospho-N-acetylmuramoyl-pentapeptide-transferase	2.7.8.13		base_tigr	base_ec	base_ec	
UDP-N-acetylmuramoylalanine--D-glutamate ligase	6.3.2.9	murD	UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	6.3.2.9	CDS	UDP-N-acetylmuramoylalanine--D-glutamate ligase	6.3.2.9		base_tigr	base_lit-s	base_ec	
cell division protein FtsW		ftsW	cell division-specific peptidoglycan biosynthesis regulator FtsW		CDS	Cell division protein FtsW			base_tigr	lit-s	gs-sh	
undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	2.4.1.227	murG	UDP-N-acetylglucosamine-N-acetylmuramylpentapeptide N-acetylglucosamine transferase	2.4.1.227	CDS	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	2.4.1.227		base_tigr	base_ec	base_ec	
UDP-N-acetylmuramate--alanine ligase	6.3.2.8	murC	UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)	6.3.2.8	CDS	UDP-N-acetylmuramate--alanine ligase	6.3.2.8		base_tigr	base_lit-s	base_ec	
D-alanine--D-alanine ligase B	6.3.2.4	ddlB	D-alanine--D-alanine ligase (EC 6.3.2.4)	6.3.2.4	CDS	D-alanine--D-alanine ligase	6.3.2.4		base_ec	base_ec	base_ec	
cell division protein ftsQ		ftsQ	Cell division septal protein		CDS	Cell division protein FtsQ			gs-sh	lit-s	gs-sh	
cell division protein FtsA		ftsA	cell division protein FtsA		CDS	Cell division protein FtsA			base_lit-s	lit-s	lit-s	
cell division protein FtsZ		ftsZ	cell division protein FtsZ		CDS	Cell division protein FtsZ	3.4.24.-		base_lit-s	lit-s	lit-s	
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	3.5.1.-	lpxC	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108)	3.5.1.108	CDS	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	3.5.1.-		base_tigr	base_lit-s	lit-s	
secretion monitor		secM	protein translocase subunit secM		CDS	Secretion monitor precursor			gs-sh	gs-sh	gs-sh	
preprotein translocase, SecA subunit		secA	protein translocase subunit secA		CDS	Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)			base_tigr	gs-sh	gs-sh	
mutator mutT protein	3.6.1.-	mutT	8-oxo-dGTPase	3.6.1.-,3.6.1.55	CDS	"Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase)"	3.6.1.-		gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG003276: zinc-binding protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG002842: hypothetical protein			base_one HP	base_one HP	lit-s	
dephospho-CoA kinase	2.7.1.24	coaE	dephospho-CoA kinase (EC 2.7.1.24)	2.7.1.24	CDS	Dephospho-CoA kinase	2.7.1.24		base_tigr	base_ec	base_ec	
guanosine monophosphate reductase	1.7.1.7	guaC	guanosine monophosphate reductase, eukaryotic	1.7.1.7	CDS	GMP reductase	1.7.1.7		base_tigr	base_ec	base_ec	
type II secretion system (T2SS), F family protein			Type II secretory pathway, component PulF		CDS	Type IV fimbrial assembly protein PilC			0	0	0	
type II/IV secretion system family protein			Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB		CDS	"Type IV fimbrial assembly, ATPase PilB"			0	0	0	
prepilin-type N-terminal cleavage/methylation domain protein			prepilin-type N-terminal cleavage/methylation domain		CDS	Type IV pilin PilA			base_tigr	0	0	
nicotinate-nucleotide diphosphorylase	2.4.2.19	nadC	nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19)	2.4.2.19	CDS	Quinolinate phosphoribosyltransferase [decarboxylating]	2.4.2.19		base_tigr	base_ec	base_ec	
1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	3.5.1.28	ampD	Negative regulator of beta-lactamase expression		CDS	N-acetylmuramoyl-L-alanine amidase AmpD	3.5.1.28		gs-sh	base_ec	map	
protein AmpE		ampE	Membrane protein required for beta-lactamase induction		CDS	AmpE protein			gs-sh	lit-s	orth	
aromatic amino acid transport protein AroP		aroP	aromatic amino acid:proton symporter, AAT family (TC 2.A.3.1.3)		CDS	Aromatic amino acid transport protein AroP			gs-sh	lit-s	map	
bacterial regulatory s, gntR family protein			transcriptional regulator, GntR family		CDS	Transcriptional repressor for pyruvate dehydrogenase complex			gs-sh	0	0	
pyruvate dehydrogenase (acetyl-transferring), homodimeric type	1.2.4.1	aceE	pyruvate dehydrogenase E1 component, homodimeric type	1.2.4.1	CDS	Pyruvate dehydrogenase E1 component	1.2.4.1		base_tigr	base_ec	base_ec	
dihydrolipoyllysine-residue acetyltransferase	2.3.1.12	aceF	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form	2.3.1.12	CDS	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex	2.3.1.12		base_tigr	base_ec	base_ec	
dihydrolipoyl dehydrogenase	1.8.1.4	lpdA	dihydrolipoamide dehydrogenase	1.8.1.4	CDS	Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex @ Dihydrolipoamide dehydrogenase	1.8.1.4, 1.8.1.4		base_tigr	base_ec-d	base_ec-d	
conserved hypothetical protein			Protein of unknown function (DUF3300).		CDS	Putative exported protein			base_one HP	base_one HP	0	
aconitate hydratase 2	4.2.1.3	acnB	aconitase	4.2.1.3, 4.2.1.99,4.2.1.3	CDS	Aconitate hydratase 2 @ 2-methylisocitrate dehydratase	4.2.1.3, 4.2.1.99		base_tigr	base_ec-d	base_ec-d	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00638902: hypothetical protein			base_one HP	base_one HP	lit-s	
S-adenosylmethionine decarboxylase proenzyme	4.1.1.50	speD	adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)	4.1.1.50	CDS	"S-adenosylmethionine decarboxylase proenzyme, prokaryotic class 1A"	4.1.1.50		base_tigr	base_ec	base_ec	
spermidine synthase	2.5.1.16	speE	spermidine synthase (EC 2.5.1.16)	2.5.1.16	CDS	Spermidine synthase	2.5.1.16		base_tigr	base_ec	base_ec	
bacterial chaperone lipo family protein			Bacterial chaperone lipoprotein (PulS_OutS).		CDS	"Predicted chaperone lipoprotein YacC, potentially involved in protein secretion"			0	0	0	
blue copper oxidase CueO		cueO	cell division protein SufI		CDS	Blue copper oxidase CueO precursor			gs-sh	gs-sh	map	
quinoprotein glucose dehydrogenase	1.1.5.2	gcd	membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	1.1.5.2	CDS	"Glucose dehydrogenase, PQQ-dependent"	1.1.5.2		base_ec	base_ec	base_ec	
hypoxanthine phosphoribosyltransferase	2.4.2.8	hpt	hypoxanthine phosphoribosyltransferase	2.4.2.8	CDS	Hypoxanthine-guanine phosphoribosyltransferase	2.4.2.8		base_lit-s	base_ec	base_ec	
carbonic anhydrase 2	4.2.1.1	can	Carbonic anhydrase	4.2.1.1	CDS	Carbonic anhydrase	4.2.1.1		base_ec	base_ec	base_lit-s	
conserved hypothetical protein			ABC-type multidrug transport system, ATPase component		CDS	"ABC-type multidrug transport system, ATPase component"			base_one HP	base_one HP	lit-s	
inner membrane transport permease yadH		yadH	ABC-type polysaccharide/polyol phosphate export systems, permease component		CDS	"ABC-type multidrug transport system, permease component"			gs-sh	orth	map	
PTS system fructose IIA component family protein			Phosphotransferase system, mannose/fructose-specific component IIA	2.7.1.69	CDS	Putative PTS system IIA component yadI	2.7.1.69		map	tf_idf	base_ec	
polysaccharide deacetylase family protein			Predicted xylanase/chitin deacetylase		CDS	Polysaccharide deacetylase			0	lit-s	0	
aspartate 1-decarboxylase	4.1.1.11	panD	L-aspartate 1-decarboxylase (EC 4.1.1.11)	4.1.1.11	CDS	Aspartate 1-decarboxylase	4.1.1.11		base_tigr	base_ec	base_ec	
conserved hypothetical family protein			conserved hypothetical protein (putative transposase or invertase)		CDS	Transposase ECs0136			base_tigr	0	0	
pantoate--beta-alanine ligase	6.3.2.1	panC	pantothenate synthetase (EC 6.3.2.1)	6.3.2.1	CDS	Pantoate--beta-alanine ligase	6.3.2.1		base_ec	base_ec	base_ec	
3-methyl-2-oxobutanoate hydroxymethyltransferase	2.1.2.11	panB	ketopantoate hydroxymethyltransferase (EC 2.1.2.11)	2.1.2.11	CDS	3-methyl-2-oxobutanoate hydroxymethyltransferase	2.1.2.11		base_tigr	base_lit-s	base_ec	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	Fimbrial protein YadC			0	0	0	
conserved hypothetical protein			P pilus assembly protein, pilin FimA		CDS	Fimbrial protein YadK			base_one HP	base_one HP	0	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	Fimbrial protein YadL			0	tf_idf	0	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	Fimbrial protein YadM			0	0	0	
outer membrane usher protein htrE		htrE	P pilus assembly protein, porin PapC		CDS	Outer membrane usher protein HtrE			gs-sh	lit-s	map	
gram-negative pili assembly chaperone, C-terminal domain protein			P pilus assembly protein, chaperone PapD		CDS	Chaperone protein EcpD			0	tf_idf	0	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	Fimbrial protein YadN			0	0	0	
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	2.7.6.3	folK	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	2.7.6.3	CDS	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	2.7.6.3		base_tigr	base_ec	base_lit-s	
poly(A) polymerase	2.7.7.19	pcnB	poly(A) polymerase	2.7.7.19	CDS	Poly(A) polymerase	2.7.7.19		base_lit-s	base_ec	base_ec	
glutamyl-queuosine tRNA(Asp) synthetase	6.1.1.-	gluQ	glutamyl-queuosine tRNA(Asp) synthetase	6.1.1.-	CDS	glutamyl-Q-tRNA synthetase			base_lit-s	gs-sh	gs-sh	
RNA polymerase-binding protein DksA		dksA	transcriptional regulator, TraR/DksA family		CDS	"C4-type zinc finger protein, DksA/TraR family"			base_tigr	gs-sh	gs-sh	
sugar fermentation stimulation protein		sfsA	sugar fermentation stimulation protein		CDS	Sugar/maltose fermentation stimulation protein homolog			base_lit-s	0	0	
2'-5' RNA ligase	6.5.1.-		2'-5' RNA ligase	6.5.1.-	CDS	COG1514: 2'-5' RNA ligase			base_lit-s	lit-s	lit-s	
ATP-dependent helicase HrpB	3.6.4.-	hrpB	ATP-dependent helicase HrpB	3.6.4.13	CDS	ATP-dependent helicase HrpB			base_lit-s	base_lit-s	base_lit-s	
penicillin-binding protein 1B		mrcB	penicillin-binding protein 1B	2.4.1.129, 3.4.-	CDS	Multimodular transpeptidase-transglycosylase	2.4.1.129, 3.4.-.-		base_lit-s	0	0	
ferrichrome-iron receptor		fhuA	TonB-dependent siderophore receptor		CDS	Ferric hydroxamate outer membrane receptor FhuA			gs-sh	0	0	
iron(3+)-hydroxamate import ATP-binding protein FhuC	3.6.3.34	fhuC	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components	3.6.3.34	CDS	"Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC"			base_ec	gs-sh	gs-sh	
iron(3+)-hydroxamate-binding protein fhuD		fhuD	ABC-type Fe3+-hydroxamate transport system, periplasmic component		CDS	"Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD"			gs-sh	0	0	
iron(3+)-hydroxamate import system permease protein fhuB		fhuB	ABC-type Fe3+-siderophore transport system, permease component		CDS	"Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB"			gs-sh	0	0	
glutamate-1-semialdehyde-2,1-aminomutase	5.4.3.8	hemL	glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)	5.4.3.8	CDS	Glutamate-1-semialdehyde aminotransferase	5.4.3.8		base_tigr	base_ec	base_ec	
H(+)/Cl(-) exchange transporter ClcA		clcA	Chloride channel protein EriC		CDS	H(+)/Cl(-) exchange transporter ClcA			gs-sh	base_lit-s	orth	
iron-sulfur cluster insertion protein erpA		erpA	Iron-sulfur cluster assembly accessory protein		CDS	"ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family"			gs-sh	0	0	
conserved hypothetical protein			Predicted membrane protein		CDS	Putative inner membrane protein			base_one HP	base_one HP	0	
vitamin B12-binding protein		btuF	ABC-type Fe3+-hydroxamate transport system, periplasmic component		CDS	"Vitamin B12 ABC transporter, B12-binding component BtuF"			gs-sh	gs-sh	map	
MTA/SAH nucleosidase	3.2.2.16	mtnN	methylthioadenosine nucleosidase/adenosylhomocysteine nucleosidase	3.2.2.9,3.2.2.16, 3.2.2.9	CDS	5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase	3.2.2.16, 3.2.2.9		base_ec-d	base_ec-d	base_ec-d	
deoxyguanosinetriphosphate triphosphohydrolase	3.1.5.1	dgt	deoxyguanosinetriphosphate triphosphohydrolase, putative	3.1.5.1	CDS	"Deoxyguanosinetriphosphate triphosphohydrolase, subgroup 1"	3.1.5.1		base_ec	base_ec	base_ec	
protease do	3.4.21.-	degP	peptidase Do. Serine peptidase. MEROPS family S01B	3.4.21.107	CDS	HtrA protease/chaperone protein			gs-sh	gs-sh	gs-sh	
carbohydrate diacid regulator		cdaR	transcriptional regulator, CdaR family		CDS	Sugar diacid utilization regulator SdaR			gs-sh	0	0	
conserved hypothetical protein			Protein of unknown function (DUF3461).		CDS	Chromosome segregation ATPase			base_one HP	base_one HP	0	
calcineurin-like phosphoesterase family protein			Predicted phosphohydrolases		CDS	Phosphoesterase	3.1.-.-		0	0	orth	
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	2.3.1.117	dapD	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117)	2.3.1.117	CDS	"2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase"	2.3.1.117		base_tigr	base_ec	base_ec	
protein-P-II uridylyltransferase	2.7.7.59	glnD	UTP--GlnB (protein PII) uridylyltransferase, GlnD	2.7.7.59	CDS	[Protein-PII] uridylyltransferase	2.7.7.59		base_tigr	base_ec	base_ec	
methionine aminopeptidase, type I	3.4.11.18	map	methionine aminopeptidase, type I (EC 3.4.11.18)	3.4.11.18	CDS	Methionine aminopeptidase	3.4.11.18		base_tigr	base_ec	base_ec	
putative predicted protein						FIG00637992: hypothetical protein			base_one miss	lit-s	base_one miss	
ribosomal protein S2		rpsB	SSU ribosomal protein S2P		CDS	SSU ribosomal protein S2p (SAe)			base_tigr	0	0	
translation elongation factor Ts		tsf	translation elongation factor Ts (EF-Ts)		CDS	Translation elongation factor Ts			base_tigr	lit-s	tf_idf	
UMP kinase	2.7.4.22	pyrH	uridylate kinase (EC 2.7.4.22)	2.7.4.22	CDS	Uridylate kinase	2.7.4.-		base_tigr	gs-sh	lit-s	
ribosome recycling factor		frr	ribosome recycling factor		CDS	Ribosome recycling factor			base_lit-s	lit-s	lit-s	
1-deoxy-D-xylulose 5-phosphate reductoisomerase	1.1.1.267	dxr	1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	1.1.1.267	CDS	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1.1.1.267		base_tigr	base_lit-s	base_ec	
di-trans,poly-cis-decaprenylcistransferase	2.5.1.31	uppS	Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31)	2.5.1.31	CDS	Undecaprenyl diphosphate synthase	2.5.1.31		base_tigr	base_ec	base_ec	
phosphatidate cytidylyltransferase domain protein	2.7.7.41	cdsA	hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
phosphatidate cytidylyltransferase	2.7.7.41	cdsA	CDP-diglyceride synthetase	2.7.7.41	CDS	Phosphatidate cytidylyltransferase	2.7.7.41		base_ec	base_ec	base_ec	
RIP metalloprotease RseP	3.4.24.-	rseP	site-2 protease. Metallo peptidase. MEROPS family M50B	3.4.24.-	CDS	"Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage"			base_tigr	gs-sh	gs-sh	
outer membrane assembly complex, YaeT protein		yaeT	Beta-barrel assembly machine subunit BamA		CDS	Outer membrane protein assembly factor YaeT precursor			base_tigr	0	0	
chaperone protein skp		skp	periplasmic chaperone for outer membrane proteins Skp		CDS	Outer membrane protein H precursor			gs-sh	0	0	
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	2.3.1.-	lpxD	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191)	2.3.1.191	CDS	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	2.3.1.-		base_tigr	base_lit-s	lit-s	
beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ	4.2.1.-	fabZ	3-hydroxyacyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.-)	4.2.1.-	CDS	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase	4.2.1.-		base_tigr	0	0	
acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase	2.3.1.129	lpxA	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129)	2.3.1.129	CDS	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase	2.3.1.129		base_tigr	base_ec	base_ec	
lipid-A-disaccharide synthase	2.4.1.182	lpxB	lipid-A-disaccharide synthase (EC 2.4.1.182)	2.4.1.182	CDS	Lipid-A-disaccharide synthase	2.4.1.182		base_tigr	base_ec	base_ec	
ribonuclease HII	3.1.26.4	rnhB	RNase HII (EC 3.1.26.4)	3.1.26.4	CDS	Ribonuclease HII	3.1.26.4		base_ec	base_ec	base_ec	
DNA polymerase III subunit alpha	2.7.7.7	dnaE	DNA polymerase III, alpha subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III alpha subunit	2.7.7.7		base_ec	base_ec	base_ec	
acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	6.4.1.2	accA	acetyl-CoA carboxylase carboxyltransferase subunit alpha	6.4.1.2	CDS	Acetyl-coenzyme A carboxyl transferase alpha chain	6.4.1.2		base_tigr	base_ec	base_ec	
lysine decarboxylase, constitutive	4.1.1.18	ldcC	L-lysine decarboxylase (EC 4.1.1.18)	4.1.1.18	CDS	"Lysine decarboxylase 2, constitutive"	4.1.1.18		base_ec	base_ec	base_ec	
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein			Lactoylglutathione lyase and related lyases		CDS	FIG01280259: hypothetical protein			0	0	0	
tRNA(Ile)-lysidine synthase	6.3.4.-	tilS	tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain		CDS	tRNA(Ile)-lysidine synthetase			gs-sh	lit-s	gs-sh	
protein rof		rof	transcriptional antiterminator, Rof		CDS	Rho-specific inhibitor of transcription termination (YaeO)			gs-sh	0	0	
conserved hypothetical protein			Uncharacterised protein family (UPF0253).		CDS	FIG00905232: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	YaeQ protein			base_one HP	base_one HP	0	
peptidyl-tRNA hydrolase domain protein			Protein chain release factor B		CDS	Hypothetical protein YaeJ with similarity to translation release factor			gs-sh	0	0	
lipoprotein NlpE		nlpE	Uncharacterized lipoprotein NlpE involved in copper resistance		CDS	Copper homeostasis protein CutF precursor / Lipoprotein NlpE involeved in surface adhesion			pfam-sh	pfam-sh	pfam-sh	
nlpC/P60 family protein			Cell wall-associated hydrolases (invasion-associated proteins)		CDS	Uncharacterized lipoprotein yaeF precursor			gs-sh	gs-sh	gs-sh	
proline--tRNA ligase	6.1.1.15	proS	prolyl-tRNA synthetase (EC 6.1.1.15)	6.1.1.15	CDS	"Prolyl-tRNA synthetase, bacterial type"	6.1.1.15		base_tigr	base_ec	base_ec	
conserved hypothetical protein			putative methyltransferase, YaeB/AF_0241 family		CDS	COG1720: Uncharacterized conserved protein			base_one HP	base_one HP	0	
protein rcsF		rcsF	hypothetical protein		CDS	Protein RcsF			base_one HP	lit-s	base_one HP	
D-methionine-binding lipoprotein metQ		metQ	lipoprotein, YaeC family		CDS	Methionine ABC transporter substrate-binding protein			gs-sh	0	0	
D-methionine transport system permease protein metI		metI	ABC-type metal ion transport system, permease component		CDS	Methionine ABC transporter permease protein			gs-sh	gs-sh	map	
D-methionine ABC transporter, ATP-binding protein	3.6.3.-	metN	D-methionine ABC transporter, ATP-binding protein		CDS	Methionine ABC transporter ATP-binding protein			base_lit-s	0	0	
D,D-heptose 1,7-bisphosphate phosphatase	3.1.3.-	gmhB	D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase	3.1.3.83, 3.1.3.82,3.1.3.-	CDS	"D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase"	3.1.1.-		gs-sh	gs-sh	map	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
conserved hypothetical protein			transcriptional regulator, LysR family		CDS	LysR family transcriptional regulator YafC			base_one HP	base_one HP	gs-sh	
2,5-diketo-D-gluconic acid reductase B	1.1.1.274	dkgB	Aldo/keto reductases, related to diketogulonate reductase	1.1.1.274	CDS	"Methylglyoxal reductase, acetol producing / 2,5-diketo-D-gluconic acid reductase B"	1.1.1.-, 1.1.1.274		base_ec	tf_idf	tf_idf	
endonuclease/Exonuclease/phosphatase family protein			Uncharacterized protein conserved in bacteria		CDS	FIG00613320: hypothetical protein			0	0	lit-s	
methyltransferase domain protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	SAM-dependent methyltransferase YafE (UbiE paralog)			0	0	gs-sh	
membrane-bound lytic murein transglycosylase D	4.2.2.n1	mltD	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	3.2.1.-	CDS	Membrane-bound lytic murein transglycosylase D precursor	3.2.1.-		gs-sh	gs-sh	map	
hydroxyacylglutathione hydrolase	3.1.2.6	gloB	hydroxyacylglutathione hydrolase	3.1.2.6	CDS	Hydroxyacylglutathione hydrolase	3.1.2.6		base_lit-s	base_ec	base_ec	
RNase H family protein			RNase HI (EC 3.1.26.4)	3.1.26.4	CDS	Ribonuclease HI	3.1.26.4		0	0	base_ec	
methyltransferase domain protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	FIG005121: SAM-dependent methyltransferase	2.1.1.-		0	0	0	
DNA polymerase III, epsilon subunit	2.7.7.7	dnaQ	DNA polymerase III, epsilon subunit, Proteobacterial	2.7.7.7	CDS	DNA polymerase III epsilon subunit	2.7.7.7		base_ec	base_ec	base_ec	
putative aminopeptidase			hypothetical protein		CDS	putative aminopeptidase			base_one HP	base_lit-s	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
H repeat-associated yhhI domain protein		yhhI				Mobile element protein			base_one miss	0	base_one miss	
carbon-nitrogen hydrolase family protein			Predicted amidohydrolase		CDS	Omega amidase (Nit2 homolog)			orth	0	0	
inhibitor of vertebrate lysozyme		ivy	Inhibitor of vertebrate lysozyme (Ivy).		CDS	Inhibitor of vertebrate lysozyme precursor			gs-sh	orth	tf_idf	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases	1.3.99.-	CDS	acyl-CoA dehydrogenase			0	lit-s	0	
phosphoheptose isomerase	5.3.1.28	gmhA	phosphoheptose isomerase	5.3.1.28,5.3.1.-	CDS	Phosphoheptose isomerase 1	5.3.1.-		base_lit-s	orth	orth	
L,D-transpeptidase catalytic domain protein			Uncharacterized protein conserved in bacteria		CDS	probable exported protein STY0357			0	0	0	
glutamine amidotransferase domain protein			Predicted glutamine amidotransferase		CDS	Predicted glutamine amidotransferase			lit-s	lit-s	base_lit-s	
mRNA interferase YafQ	3.1.-.-	yafQ	addiction module toxin component, YafQ family/addiction module toxin, RelE/StbE family		CDS	YafQ toxin protein			gs-sh	0	0	
antitoxin DinJ		dinJ	addiction module antitoxin, RelB/DinJ family		CDS	DNA-damage-inducible protein J			gs-sh	map	orth	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
conserved hypothetical protein			Cell wall-associated hydrolases (invasion-associated proteins)		CDS	Hypothetical lipoprotein yafL precursor			base_one HP	base_one HP	gs-sh	
conserved hypothetical protein			Transposase and inactivated derivatives		CDS	Transposase and inactivated derivatives			base_one HP	base_one HP	base_lit-s	
FHIPEP family protein			Flagellar biosynthesis pathway, component FlhA		CDS	Flagellar biosynthesis protein FlhA			0	0	lit-s	
ompA family protein			Flagellar motor protein		CDS	Flagellar motor rotation protein MotB			gs-sh	gs-sh	gs-sh	
DNA polymerase IV	2.7.7.7	dinB	Nucleotidyltransferase/DNA polymerase involved in DNA repair	2.7.7.7	CDS	DNA polymerase IV	2.7.7.7		base_ec	base_lit-s	base_ec	
antitoxin YafN		yafN	Antitoxin of toxin-antitoxin stability system		CDS	Antitoxin YafN			gs-sh	lit-s	map	
mRNA interferase YafO	3.1.-.-	yafO	Toxin YafO, type II toxin-antitoxin system.		CDS	Toxin YafO			gs-sh	gs-sh	map	
acetyltransferase family protein			Acetyltransferase, GNAT family	2.3.1.-	CDS	Uncharacterized acetyltransferase YafP	2.3.1.-		0	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Protein with similarity to RtcB			base_one HP	base_one HP	0	
putative peptide chain release factor H			putative peptide chain release factor H		CDS	Peptide chain release factor homolog			base_lit-s	orth	orth	
aminoacyl-histidine dipeptidase		pepD	Xaa-His dipeptidase (EC:3.4.13.3). Metallo peptidase. MEROPS family M20C	3.4.13.-	CDS	Aminoacyl-histidine dipeptidase (Peptidase D)	3.4.13.3		gs-sh	tf_idf	map	
xanthine phosphoribosyltransferase	2.4.2.22	gpt	Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins	2.4.2.22	CDS	Xanthine-guanine phosphoribosyltransferase	2.4.2.22		base_ec	base_ec	base_ec	
alpha/beta hydrolase family protein			Dienelactone hydrolase and related enzymes	3.1.-	CDS	FIG01200175: hypothetical protein			0	0	0	
sigma factor-binding protein crl		crl	Transcriptional regulator Crl.		CDS	Curlin genes transcriptional activator			gs-sh	0	0	
outer membrane pore protein E		phoE	Outer membrane protein (porin)		CDS	Outer membrane pore protein E precursor			gs-sh	orth	map	
glutamate 5-kinase	2.7.2.11	proB	glutamate 5-kinase (EC 2.7.2.11)	2.7.2.11	CDS	Glutamate 5-kinase / RNA-binding C-terminal domain PUA	2.7.2.11		base_ec	base_ec	base_ec	
gamma-glutamyl phosphate reductase	1.2.1.41	proA	glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41)	1.2.1.41	CDS	Gamma-glutamyl phosphate reductase	1.2.1.41		base_ec	base_ec	base_ec	
toxin YkfI		ykfI	Protein of unknown function (DUF1219).		CDS	YpjF toxin protein			gs-sh	0	0	
putative antitoxin YfjZ			YagB/YeeU/YfjZ family.		CDS	YfjZ protein (antitoxin to YpjF)			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF987).		CDS	Uncharacterized protein YeeT			base_one HP	base_one HP	0	
conserved hypothetical protein			DNA repair protein radc		CDS	DNA repair protein RadC			base_one HP	base_one HP	lit-s	
intergenic-region protein			Antirestriction protein.		CDS	Antirestriction protein klcA			0	0	gs-sh	
conserved hypothetical protein			Bacterial protein of unknown function (DUF905).		CDS	Putative cytoplasmic protein			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	Intergenic-region protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Predicted transcriptional regulator		CDS	FIG00641766: hypothetical protein			base_one HP	base_one HP	0	
putative membrane protein						predicted inner membrane protein			base_one miss	0	base_one miss	
conserved hypothetical protein			Domain of unknown function (DUF932).		CDS	FIG01224161: hypothetical protein			base_one HP	base_one HP	lit-s	
50S ribosome-binding GTPase family protein			Predicted GTPase		CDS	NgrB			0	0	0	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	LysR family transcriptional regulator PerR			gs-sh	gs-sh	gs-sh	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives, IS30 family		CDS	Mobile element protein			0	0	0	
HTH-like domain protein			hypothetical protein		CDS	Mobile element protein			base_one HP	0	base_one HP	
reverse transcriptase family protein			Retron-type reverse transcriptase		CDS	Retron-type RNA-directed DNA polymerase	2.7.7.49		orth	0	0	
transposase DDE domain protein			Transposase and inactivated derivatives, IS5 family		CDS	Mobile element protein			0	0	0	
amino acid permease family protein			S-methylmethionine:proton symporter, AAT family (TC 2.A.3.1.10)		CDS	S-methylmethionine permease			0	0	0	
homocysteine S-methyltransferase	2.1.1.10	mmuM	homocysteine S-methyltransferase (EC 2.1.1.10)	2.1.1.10	CDS	Homocysteine S-methyltransferase	2.1.1.10		base_ec	base_ec	base_ec	
ABC transporter family protein			ABC-type spermidine/putrescine transport systems, ATPase components	3.6.3.30	CDS	ABC transporter ATP-binding protein			0	0	0	
binding--dependent transport system inner membrane component family protein			ABC-type Fe3+ transport system, permease component		CDS	"Ferric iron ABC transporter, permease protein"			0	0	0	
putative transposase			Transposase and inactivated derivatives, IS1 family		CDS	Mobile element protein			0	0	0	
			Transposase and inactivated derivatives		CDS				base_one miss	base_both miss	base_one miss	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			orth	0	0	
putative antitoxin YfjZ			YagB/YeeU/YfjZ family.		CDS	putative structure			0	0	0	
conserved hypothetical protein			Transposase and inactivated derivatives		CDS	Mobile element protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Dihydrodipicolinate synthase/N-acetylneuraminate lyase	4.2.1.52	CDS	Dihydrodipicolinate synthase homolog	4.2.1.52		base_one HP	base_one HP	base_ec	
conserved hypothetical protein			putative dehydratase, YjhG/YagF family		CDS	Dihydroxy-acid dehydratase	4.2.1.9		base_one HP	base_one HP	0	
inner membrane symporter yicJ		yicJ	sugar (Glycoside-Pentoside-Hexuronide) transporter		CDS	Xyloside transporter XynT			gs-sh	gs-sh	map	
beta-xylosidase	3.2.1.37	xynB	Beta-xylosidase	3.2.1.37	CDS	Beta-xylosidase	3.2.1.37		base_ec	base_ec	base_lit-s	
bacterial transcriptional regulator family protein			transcriptional regulator, IclR family		CDS	"Transcriptional regulator, IclR family"			gs-sh	gs-sh	lit-s	
ornithine carbamoyltransferase	2.1.3.3	argF	ornithine carbamoyltransferase (EC 2.1.3.3)	2.1.3.3	CDS	Ornithine carbamoyltransferase	2.1.3.3		base_tigr	base_ec	base_ec	
putative transposase			Transposase and inactivated derivatives, IS1 family		CDS	Mobile element protein			0	0	0	
			Transposase and inactivated derivatives		CDS				base_one miss	base_both miss	base_one miss	
putative cP4-6 prophage; predicted protein			hypothetical protein		CDS	FIG00640257: hypothetical protein			base_one HP	0	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF3296).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
resolvase, N terminal domain protein			Site-specific recombinases, DNA invertase Pin homologs		CDS	DNA-binding protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00639014: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
phage integrase family protein			Site-specific recombinase XerD		CDS	CP4-6 prophage; predicted phage integrase			0	orth	0	
			Transcriptional regulator		CDS	Transcriptional regulator			base_one miss	base_one miss	base_lit-s	
xdhC and CoxI family protein			Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family		CDS	Hypothetical protein YagQ			gs-sh	0	0	
molybdopterin-binding domain of aldehyde dehydrogenase family protein			xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC 1.17.1.4)	1.17.1.4	CDS	"Periplasmic aromatic aldehyde oxidoreductase, molybdenum binding subunit YagR"			0	0	0	
FAD binding domain in molybdopterin dehydrogenase family protein			Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs	1.17.1.4	CDS	"Periplasmic aromatic aldehyde oxidoreductase, FAD binding subunit YagS"			0	0	0	
putative xanthine dehydrogenase yagT iron-sulfur-binding subunit			Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs		CDS	"Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT"			gs-sh	0	0	
inner membrane protein yagU		yagU	Predicted periplasmic/secreted protein		CDS	DUF1440 domain-containing membrane protein			gs-sh	0	0	
gram-negative pili assembly chaperone, N-terminal domain protein			Gram-negative pili assembly chaperone, N-terminal domain.		CDS	CFA/I fimbrial chaperone			lit-s	0	0	
putative receptor			hypothetical protein		CDS	CFA/I fimbrial minor adhesin			base_one HP	0	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	CFA/I fimbrial subunit C usher protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	CFA/I fimbrial auxiliary subunit			lit-s	base_one HP	base_one HP	
fimbrillin matB		matB	hypothetical protein		CDS	CFA/I fimbrial major subunit			base_one HP	0	base_one HP	
bacterial regulatory s, luxR family protein			DNA-binding HTH domain-containing proteins		CDS	FIGfam014588: Predicted regulator of CFA/I fimbriae			gs-sh	0	0	
ribosomal protein L31		rpmE	LSU ribosomal protein L31P		CDS	"LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent"			base_tigr	0	0	
conserved hypothetical protein			Protein of unknown function (DUF3442).		CDS	Putative adhesin			base_one HP	base_one HP	0	
transposase family protein			Transposase.		CDS	Mobile element protein			lit-s	0	0	
bacterial regulatory helix-turn-helix s, AraC family protein			transcriptional regulator, AraC family		CDS	Transcriptional regulator YkgA			pfam-sh	map	tf_idf	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
inner membrane protein ykgB		ykgB	Predicted membrane protein		CDS	Putative inner membrane protein			gs-sh	orth	orth	
conserved hypothetical protein						hypothetical protein			base_one HP	lit-s	base_one HP	
pyridine nucleotide-disulfide oxidoreductase family protein			Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes		CDS	"Putative Dihydrolipoamide dehydrogenase; Mercuric ion reductase; PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase"	1.8.1.4, 1.16.1.1		0	0	0	
bacterial regulatory helix-turn-helix s, AraC family protein			transcriptional regulator, AraC family		CDS	Putative HTH-type transcriptional regulator ykgD			pfam-sh	gs-sh	gs-sh	
conserved hypothetical protein						hypothetical protein			base_one HP	lit-s	base_one HP	
cysteine-rich domain protein			Fe-S oxidoreductase		CDS	"Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE"			0	0	0	
iron-sulfur cluster-binding protein			iron-sulfur cluster-binding protein		CDS	"Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF"			base_lit-s	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	"Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG"			base_one HP	base_one HP	0	
G-rich domain on tyrosine kinase family protein			G-rich domain on putative tyrosine kinase.		CDS	FIG00639487: hypothetical protein			lit-s	0	0	
choline dehydrogenase	1.1.99.1	betA	choline dehydrogenase (EC 1.1.99.1)	1.1.99.1	CDS	Choline dehydrogenase	1.1.99.1		base_tigr	base_ec	base_ec	
betaine aldehyde dehydrogenase	1.2.1.8	betB	betaine aldehyde dehydrogenase (EC 1.2.1.8)	1.2.1.8	CDS	Betaine aldehyde dehydrogenase	1.2.1.8		base_tigr	base_ec	base_ec	
transcriptional repressor BetI		betI	transcriptional regulator, TetR family		CDS	HTH-type transcriptional regulator BetI			base_tigr	gs-sh	orth	
transporter, betaine/carnitine/choline transporter family protein			choline/carnitine/betaine transport		CDS	High-affinity choline uptake protein BetT			base_tigr	0	0	
cyclic di-GMP phosphodiesterase yahA	3.1.4.-	yahA	FOG: EAL domain		CDS	FIG00638331: hypothetical protein			gs-sh	0	0	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	Putative HTH-type transcriptional regulator yahB			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF1097).		CDS	FIG00638603: hypothetical protein			base_one HP	base_one HP	lit-s	
ankyrin repeat family protein			FOG: Ankyrin repeat		CDS	Putative transcription factor			lit-s	0	0	
conserved hypothetical protein									base_one HP	base_one HP	base_both miss	
conserved hypothetical protein			Protein of unknown function (DUF2877).		CDS	FIG00637989: hypothetical protein			base_one HP	base_one HP	lit-s	
coA binding domain protein			Succinyl-CoA synthetase, alpha subunit		CDS	Putative oxidoreductase subunit			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF1116).		CDS	Putative cytoplasmic protein			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00639198: hypothetical protein			lit-s	base_one HP	base_one HP	
carbamate kinase	2.7.2.2	cpkA	carbamate kinase (EC 2.7.2.2)	2.7.2.2	CDS	Carbamate kinase	2.7.2.2		base_ec	base_ec	base_ec	
amidohydrolase family protein			Cytosine deaminase and related metal-dependent hydrolases		CDS	Cytosine deaminase	3.5.4.1		0	orth	0	
conserved hypothetical protein			Zn-dependent alcohol dehydrogenases	1.-	CDS	Alcohol dehydrogenase	1.1.1.1		base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638728: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein						hypothetical protein			base_one HP	lit-s	base_one HP	
homoserine/Threonine efflux family protein			The Resistance to Homoserine/Threonine (RhtB) Family protein		CDS	Threonine efflux protein			base_tigr	0	0	
conserved hypothetical protein			Protein of unknown function (DUF1471).		CDS	FIG00639237: hypothetical protein			base_one HP	base_one HP	lit-s	
propionate catabolism operon regulatory protein PrpR		prpR	propionate catabolism operon regulatory protein PrpR		CDS	Propionate catabolism operon regulatory protein PrpR			base_lit-s	lit-s	lit-s	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
methylisocitrate lyase	4.1.3.30	prpB	methylisocitrate lyase (EC 4.1.3.30)	4.1.3.30	CDS	Methylisocitrate lyase	4.1.3.30		base_tigr	base_ec	base_ec	
2-methylcitrate synthase/citrate synthase II family protein			2-methylcitrate synthase (EC 2.3.3.5)	2.3.3.5	CDS	2-methylcitrate synthase	2.3.3.5		base_tigr	map	base_ec	
2-methylcitrate dehydratase	4.2.1.79	prpD	2-methylcitrate dehydratase (EC 4.2.1.79)	4.2.1.79	CDS	2-methylcitrate dehydratase	4.2.1.79		base_tigr	base_lit-s	base_ec	
propionate--CoA ligase	6.2.1.17	prpE	propionyl-CoA synthetase (EC 6.2.1.17)	6.2.1.17	CDS	Propionate--CoA ligase	6.2.1.17		base_tigr	base_ec	base_ec	
cytosine permease		codB	Purine-cytosine permease and related proteins		CDS	COG1457: Purine-cytosine permease and related proteins			gs-sh	map	lit-s	
cytosine deaminase	3.5.4.1	codA	Cytosine deaminase and related metal-dependent hydrolases	3.5.4.1	CDS	Cytosine deaminase	3.5.4.1		base_ec	base_ec	base_ec	
HTH-type transcriptional regulator CynR		cynR	Transcriptional regulator		CDS	Cyn operon transcriptional activator			gs-sh	orth	map	
carbonic anhydrase 1	4.2.1.1	cynT	Carbonic anhydrase	4.2.1.1	CDS	Carbonic anhydrase	4.2.1.1		base_ec	base_ec	base_lit-s	
cyanate hydratase	4.2.1.104	cynS	cyanate hydratase	4.2.1.104	CDS	Cyanate hydratase	4.2.1.104		base_lit-s	base_ec	base_ec	
cyanate transporter family protein			cyanate transporter		CDS	Cyanate transport protein CynX			base_tigr	0	0	
galactoside O-acetyltransferase	2.3.1.18	lacA	Acetyltransferase (isoleucine patch superfamily)	2.3.1.18	CDS	Galactoside O-acetyltransferase	2.3.1.18		base_ec	base_ec	base_ec	
lactose permease		lacY	oligosaccharide:H+ symporter		CDS	Lactose permease			gs-sh	lit-s	map	
beta-galactosidase	3.2.1.23	lacZ	Beta-galactosidase/beta-glucuronidase	3.2.1.23	CDS	Beta-galactosidase	3.2.1.23		base_ec	base_ec	base_ec	
lactose operon repressor		lacI	transcriptional regulator, LacI family		CDS	Transcriptional repressor of the lac operon			gs-sh	tf_idf	map	
bacterial transcriptional regulator family protein			transcriptional regulator, IclR family		CDS	Mhp operon transcriptional activator			gs-sh	map	orth	
3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	1.14.13.n3	mhpA	3-hydroxyphenylpropionate hydroxylase	1.14.13.127	CDS	3-(3-hydroxy-phenyl)propionate hydroxylase	1.14.13.-		base_ec-d	orth	0	
2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase	1.13.11.16	mhpB	2,3-dihydroxyphenylpropionate 1,2-dioxygenase (EC 1.13.11.16)	1.13.11.16	CDS	"3-carboxyethylcatechol 2,3-dioxygenase"	1.13.11.16		base_ec	base_ec	base_ec	
2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase	3.7.1.n1	mhpC	2-hydroxy-6-ketonona-2,4-dienedioate hydrolase (EC 3.7.1.-)	3.7.1.-	CDS	"2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase"	3.7.1.-		gs-sh	gs-sh	map	
2-keto-4-pentenoate hydratase	4.2.1.80	mhpD	2-keto-4-pentenoate hydratase (EC 4.2.1.80)	4.2.1.80	CDS	2-keto-4-pentenoate hydratase	4.2.1.80		base_ec	base_lit-s	base_ec	
acetaldehyde dehydrogenase	1.2.1.10		acetaldehyde dehydrogenase (EC 1.2.1.10)	1.2.1.10	CDS	"Acetaldehyde dehydrogenase, acetylating, in gene cluster for degradation of phenols, cresols, catechol"	1.2.1.10		base_tigr	base_ec	base_ec	
4-hydroxy-2-oxovalerate aldolase	4.1.3.39	dmpG	4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)	4.1.3.39	CDS	4-hydroxy-2-oxovalerate aldolase	4.1.3.39		base_tigr	base_lit-s	base_ec	
sugar (and other) transporter family protein			Arabinose efflux permease		CDS	4-hydroxybenzoate transporter			0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Nucleoprotein/polynucleotide-associated enzyme			base_one HP	base_one HP	0	
S-formylglutathione hydrolase	3.1.2.12	fghA	S-formylglutathione hydrolase	3.1.2.12	CDS	S-formylglutathione hydrolase	3.1.2.12		base_lit-s	base_lit-s	base_lit-s	
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	1.1.1.284		S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	1.1.1.284, 1.1.1.1	CDS	S-(hydroxymethyl)glutathione dehydrogenase	1.1.1.284		base_lit-s	base_ec	base_ec-d	
transcriptional repressor frmR		frmR	Uncharacterized protein conserved in bacteria		CDS	FrmR: Negative transcriptional regulator of formaldehyde detoxification operon			gs-sh	0	0	
putative predicted acyl transferase			hypothetical protein		CDS	Putative uncharacterized protein YaiO			base_one HP	0	base_one HP	
bacterial transferase hexapeptide family protein			hypothetical protein		CDS	Glucose-1-phosphate thymidylyltransferase	2.7.7.24		base_one HP	0	base_one HP	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
glycosyl transferase 2 family protein			Glycosyltransferases, probably involved in cell wall biogenesis		CDS	Glucose-1-phosphate thymidylyltransferase	2.7.7.24		0	0	0	
glcNAc-PI de-N-acetylase family protein			Uncharacterized proteins, LmbE homologs		CDS	FIG00640332: hypothetical protein			0	0	0	
taurine ABC transporter, periplasmic binding protein		tauA	taurine ABC transporter, periplasmic binding protein		CDS	Taurine-binding periplasmic protein TauA			base_lit-s	gs-sh	gs-sh	
ABC transporter family protein			ABC-type taurine transport system, ATPase component	3.6.3.36	CDS	Taurine transport ATP-binding protein TauB			0	0	gs-sh	
binding--dependent transport system inner membrane component family protein			ABC-type nitrate/sulfonate/bicarbonate transport system, permease component		CDS	Taurine transport system permease protein TauC			0	0	gs-sh	
alpha-ketoglutarate-dependent taurine dioxygenase	1.14.11.17	tauD	Probable taurine catabolism dioxygenase	1.14.11.17	CDS	Alpha-ketoglutarate-dependent taurine dioxygenase	1.14.11.17		base_ec	base_ec	base_ec	
delta-aminolevulinic acid dehydratase	4.2.1.24	hemB	porphobilinogen synthase (EC 4.2.1.24)	4.2.1.24	CDS	Porphobilinogen synthase	4.2.1.24		base_ec	base_ec	base_ec	
putative predicted protein						FIG00640177: hypothetical protein			base_one miss	lit-s	base_one miss	
conserved hypothetical protein			hypothetical protein		CDS	Putative flagellin structural protein			lit-s	base_one HP	base_one HP	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
transposase family protein			Transposase.		CDS	Mobile element protein			lit-s	0	0	
outer membrane autotransporter barrel domain protein			outer membrane autotransporter barrel domain		CDS	Putative flagellin structural protein			base_tigr	0	0	
putative dNA-binding transcriptional regulator			hypothetical protein		CDS	FIG00637869: hypothetical protein			base_one HP	0	base_one HP	
beta-lactamase family protein			Beta-lactamase class C and other penicillin binding proteins		CDS	Penicillin-binding protein AmpH			0	0	0	
putative hypothe						FIG00638822: hypothetical protein			base_one miss	0	base_one miss	
protein sbmA		sbmA	ABC-type long-chain fatty acid transport system, fused permease and ATPase components		CDS	SbmA protein			gs-sh	lit-s	map	
conserved hypothetical protein			Protein of unknown function (DUF1615).		CDS	putative lipoprotein			base_one HP	base_one HP	0	
inner membrane protein yaiY		yaiY	Protein of unknown function (DUF2755).		CDS	Putative inner membrane protein			gs-sh	orth	0	
conserved hypothetical protein			Protein of unknown function (DUF2754).		CDS	membrane protein yaiZ			base_one HP	base_one HP	gs-sh	
D-alanine--D-alanine ligase A	6.3.2.4	ddlA	D-alanine--D-alanine ligase (EC 6.3.2.4)	6.3.2.4	CDS	D-alanine--D-alanine ligase A	6.3.2.4		base_ec	base_lit-s	base_ec	
anti-adapter protein iraP		iraP	Sigma-S stabilisation anti-adaptor protein.		CDS	Cytoplasmic protein YaiB			gs-sh	0	0	
alkaline phosphatase	3.1.3.1	phoA	alkaline phosphatase (EC 3.1.3.1)	3.1.3.1	CDS	Alkaline phosphatase	3.1.3.1		base_ec	base_ec	base_ec	
phosphate starvation-inducible protein psiF		psiF	psiF repeat.		CDS	Phosphate starvation-inducible protein PsiF			gs-sh	lit-s	map	
putative diguanylate cyclase AdrA			diguanylate cyclase (GGDEF) domain		CDS	Protein YaiC			0	0	0	
pyrroline-5-carboxylate reductase	1.5.1.2	proC	pyrroline-5-carboxylate reductase (EC 1.5.1.2)	1.5.1.2	CDS	Pyrroline-5-carboxylate reductase	1.5.1.2		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Protein YaiI			base_one HP	base_one HP	0	
shikimate kinase 2	2.7.1.71	aroL	shikimate kinase (EC 2.7.1.71)	2.7.1.71	CDS	Shikimate kinase III	2.7.1.71		base_ec	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	Protein YaiA			lit-s	base_one HP	base_one HP	
aroM family protein			AroM protein.		CDS	AroM protein			lit-s	lit-s	lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Cytoplasmic protein YaiE			base_one HP	base_one HP	0	
conserved hypothetical protein						Protein YkiA			base_one HP	base_one HP	base_one miss	
recombination-associated protein rdgC		rdgC	DNA recombination-dependent growth factor C		CDS	DNA recombination-dependent growth factor C			gs-sh	gs-sh	base_lit-s	
fructokinase	2.7.1.4	mak	N-acetylglucosamine kinase	2.7.1.4,2.7.1.59	CDS	"Glucokinase, ROK family"	2.7.1.2		base_ec-d	base_ec-d	base_ec-d	
conserved hypothetical protein						FIG01271267: hypothetical protein			base_one HP	base_one HP	base_one miss	
protein AraJ		araJ	Arabinose efflux permease		CDS	Protein AraJ precursor			gs-sh	gs-sh	gs-sh	
nuclease sbcCD subunit C		sbcC	exonuclease SbcC		CDS	Exonuclease SbcC			gs-sh	gs-sh	lit-s	
nuclease sbcCD subunit D		sbcD	Exodeoxyribonuclease I subunit D	3.1.11.1	CDS	Exonuclease SbcD			gs-sh	gs-sh	gs-sh	
phosphate regulon transcriptional regulatory protein PhoB		phoB	phosphate regulon transcriptional regulatory protein PhoB		CDS	Phosphate regulon transcriptional regulatory protein PhoB (SphR)			base_lit-s	tf_idf	tf_idf	
phosphate regulon sensor kinase PhoR	2.7.3.-	phoR	PAS/PAC sensor signal transduction histidine kinase (EC 2.7.13.3)	2.7.13.3	CDS	Phosphate regulon sensor protein PhoR (SphS)	2.7.13.3		base_tigr	map	base_ec	
branched-chain amino acid transport system II carrier protein		brnQ	branched-chain amino acid uptake carrier		CDS	Branched-chain amino acid transport system carrier protein			base_tigr	orth	tf_idf	
proline-specific permease ProY		proY	proline:proton symporter, AAT family (TC 2.A.3.1.6)		CDS	Proline-specific permease proY			gs-sh	lit-s	gs-sh	
alpha amylase, catalytic domain protein			Glycosidases	3.2.1.20	CDS	Maltodextrin glucosidase	3.2.1.20		0	0	base_ec	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria	3.1.4.14	CDS	Acyl carrier protein phosphodiesterase	3.1.4.14		base_one HP	base_one HP	base_ec	
tRNA ribosyltransferase-isomerase	5.-.-.-	queA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	5.-	CDS	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	5.-.-.-		base_tigr	gs-sh	base_lit-s	
queuine tRNA-ribosyltransferase	2.4.2.29	tgt	tRNA-guanine transglycosylase (EC 2.4.2.29)	2.4.2.29	CDS	tRNA-guanine transglycosylase	2.4.2.29		base_ec	base_ec	base_ec	
preprotein translocase, YajC subunit		yajC	protein translocase subunit yajC		CDS	Preprotein translocase subunit YajC (TC 3.A.5.1.1)			base_tigr	lit-s	gs-sh	
-export membrane protein SecD		secD	protein-export membrane protein, SecD/SecF family		CDS	Protein-export membrane protein SecD (TC 3.A.5.1.1)			gs-sh	0	0	
protein translocase subunit SecF		secF	protein translocase subunit secF		CDS	Protein-export membrane protein SecF (TC 3.A.5.1.1)			lit-s	gs-sh	gs-sh	
HNH endonuclease family protein			HNH endonuclease.		CDS	hypothetical protein			lit-s	base_one HP	base_one HP	
nucleoside-specific channel-forming protein tsx		tsx	Nucleoside-binding outer membrane protein		CDS	Nucleoside-specific channel-forming protein Tsx precursor			gs-sh	tf_idf	map	
conserved hypothetical protein			Protein of unknown function (DUF3251).		CDS	Hypothetical lipoprotein yajI			base_one HP	base_one HP	gs-sh	
transcriptional regulator NrdR		nrdR	transcriptional regulator NrdR		CDS	Ribonucleotide reductase transcriptional regulator NrdR			base_lit-s	gs-sh	map	
riboflavin biosynthesis protein RibD	3.5.4.26	ribD	diaminohydroxyphosphoribosylaminopyrimidine deaminase	1.1.1.193, 3.5.4.26,3.5.4.26	CDS	Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase	3.5.4.26, 1.1.1.193		base_ec-d	base_ec-d	base_ec-d	
6,7-dimethyl-8-ribityllumazine synthase	6.3.3.-	ribH	6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	2.5.1.78	CDS	"6,7-dimethyl-8-ribityllumazine synthase"	2.5.1.78		base_tigr	lit-s	base_ec	
transcription antitermination factor NusB		nusB	NusB antitermination factor		CDS	Transcription termination protein NusB			base_tigr	pfam-sh	pfam-sh	
thiamine-monophosphate kinase	2.7.4.16	thiL	thiamine-phosphate kinase	2.7.4.16	CDS	Thiamine-monophosphate kinase	2.7.4.16		base_tigr	base_ec	base_ec	
phosphatidylglycerophosphatase A	3.1.3.27	pgpA	Phosphatidylglycerophosphatase A and related proteins	3.1.3.27	CDS	Phosphatidylglycerophosphatase A	3.1.3.27		base_ec	base_ec	base_ec	
aldo/keto reductase family protein			Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)		CDS	Putative oxidoreductase			0	0	0	
1-deoxy-D-xylulose-5-phosphate synthase	2.2.1.7	dxs	1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)	2.2.1.7	CDS	1-deoxy-D-xylulose 5-phosphate synthase	2.2.1.7		base_tigr	base_ec	base_ec	
farnesyl diphosphate synthase	2.5.1.10	ispA	farnesyl-diphosphate synthase	2.5.1.1, 2.5.1.10,2.5.1.10	CDS	"Dimethylallyltransferase @ (2E,6E)-farnesyl diphosphate synthase"	2.5.1.1, 2.5.1.10		base_ec-d	base_ec-d	base_ec-d	
exodeoxyribonuclease VII, small subunit	3.1.11.6	xseB	Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)	3.1.11.6	CDS	Exodeoxyribonuclease VII small subunit	3.1.11.6		base_tigr	base_ec	base_ec	
tRNA sulfurtransferase ThiI	2.8.1.4	thiI	[ThiS-adenylate] sulfurtransferase		CDS	tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis			base_tigr	pfam-sh	gs-sh	
chaperone protein YajL		yajL	DJ-1 family protein		CDS	"DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31"			gs-sh	gs-sh	gs-sh	
2-dehydropantoate 2-reductase	1.1.1.169	panE	ketopantoate reductase (EC 1.1.1.169)	1.1.1.169	CDS	2-dehydropantoate 2-reductase	1.1.1.169		base_ec	base_lit-s	base_ec	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG001943: hypothetical protein YajQ			base_one HP	base_one HP	0	
inner membrane transport protein yajR		yajR	Arabinose efflux permease		CDS	Putative transport protein			gs-sh	orth	map	
protoheme IX farnesyltransferase	2.5.1.-	cyoE	protoheme IX farnesyltransferase	2.5.1.-	CDS	"Heme O synthase, protoheme IX farnesyltransferase COX10-CtaB"	2.5.1.-		base_lit-s	0	0	
cytochrome o ubiquinol oxidase subunit IV	1.10.3.-	cyoD	cytochrome bo3 quinol oxidase subunit 4	1.10.3.-	CDS	Cytochrome O ubiquinol oxidase subunit IV	1.10.3.-		base_tigr	lit-s	map	
cytochrome o ubiquinol oxidase, subunit III	1.10.3.-	cyoC	cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-)	1.10.3.-	CDS	Cytochrome O ubiquinol oxidase subunit III	1.10.3.-		base_tigr	lit-s	map	
cytochrome o ubiquinol oxidase, subunit I	1.10.3.-	cyoB	cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-)	1.10.3.-	CDS	Cytochrome O ubiquinol oxidase subunit I	1.10.3.-		base_tigr	lit-s	map	
ubiquinol oxidase, subunit II	1.10.3.-	cyoA	cytochrome bo3 quinol oxidase subunit 2 (EC 1.10.3.-)	1.10.3.-	CDS	Cytochrome O ubiquinol oxidase subunit II	1.10.3.-		base_tigr	gs-sh	map	
protein AmpG		ampG	AmpG-related permease		CDS	AmpG permease			gs-sh	gs-sh	map	
conserved hypothetical protein			Uncharacterized lipoprotein		CDS	Hypothetical lipoprotein YajG precursor			base_one HP	base_one HP	0	
protein BolA		bolA	transcriptional regulator, BolA protein family		CDS	Cell division protein BolA			pfam-sh	pfam-sh	pfam-sh	
putative predicted protein						FIG00637934: hypothetical protein			base_one miss	lit-s	base_one miss	
trigger factor	5.2.1.8	tig	trigger factor		CDS	Cell division trigger factor	5.2.1.8		base_lit-s	base_ec	tf_idf	
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP	3.4.21.92	clpP	ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92)	3.4.21.92	CDS	ATP-dependent Clp protease proteolytic subunit	3.4.21.92		base_tigr	base_ec	base_ec	
ATP-dependent Clp protease, ATP-binding subunit ClpX		clpX	ATP-dependent Clp protease ATP-binding subunit ClpX	3.4.21.92	CDS	ATP-dependent Clp protease ATP-binding subunit ClpX			base_tigr	lit-s	base_lit-s	
ATP-dependent protease La	3.4.21.53	lon	ATP-dependent proteinase. Serine peptidase. MEROPS family S16	3.4.21.53	CDS	ATP-dependent protease La Type I	3.4.21.53		base_tigr	base_ec	base_ec	
DNA-binding protein HU-beta		hupB	bacterial nucleoid protein HU beta subunit		CDS	DNA-binding protein HU-beta			gs-sh	base_lit-s	map	
peptidyl-prolyl cis-trans isomerase D	5.2.1.8	ppiD	Parvulin-like peptidyl-prolyl isomerase	5.2.1.8	CDS	Peptidyl-prolyl cis-trans isomerase PpiD	5.2.1.8		base_ec	base_ec	base_ec	
competence ComEA helix-hairpin-helix repeat region domain protein			competence protein ComEA helix-hairpin-helix repeat region		CDS	Putative exported protein			base_tigr	0	0	
long-chain acyl-CoA thioesterase tesC	3.1.2.-	tesC	acyl-CoA thioester hydrolase, YbgC/YbaW family	3.1.2.-	CDS	4-hydroxybenzoyl-CoA thioesterase family active site			gs-sh	0	0	
queuosine biosynthesis protein QueC		queC	preQ(0) biosynthesis protein QueC		CDS	Queuosine Biosynthesis QueC ATPase			base_tigr	0	0	
bacterial extracellular solute-binding s, 5 Middle family protein			ABC-type uncharacterized transport system, periplasmic component		CDS	"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)"			0	0	gs-sh	
HMP-PP phosphatase	3.6.1.-	cof	HAD-superfamily hydrolase, subfamily IIB	3.6.1.-	CDS	"Cof protein, HD superfamily hydrolase"			gs-sh	0	0	
asnC family protein			transcriptional regulator, AsnC family		CDS	Putative HTH-type transcriptional regulator ybaO			gs-sh	gs-sh	gs-sh	
ABC transporter family protein			ABC-type multidrug transport system, ATPase and permease components		CDS	ATP-binding component of a transport system			0	0	0	
multidrug resistance-like ATP-binding protein MdlB	3.6.3.44	mdlB	ABC-type multidrug transport system, ATPase and permease components		CDS	Multidrug resistance-like ATP-binding protein mdlB			gs-sh	lit-s	gs-sh	
nitrogen regulatory protein P-II 2		glnK	nitrogen regulatory protein P-II family		CDS	"Nitrogen regulatory protein P-II, glnK"			gs-sh	gs-sh	gs-sh	
ammonia channel		amtB	ammonium transporter (TC 1.A.11)		CDS	Ammonium transporter			gs-sh	gs-sh	lit-s	
acyl-CoA thioesterase II	3.1.2.-	tesB	acyl-CoA thioesterase II	3.1.2.-	CDS	Acyl-CoA thioesterase II	3.1.2.-		base_lit-s	lit-s	lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Glycoprotein-polysaccharide metabolism			base_one HP	base_one HP	0	
O6-methylguanine-DNA methyltransferase			O(6)-alkylguanine repair protein YbaZ		CDS	methylated-DNA--protein-cysteine methyltransferase-related protein			0	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	RNA signal recognition particle 4.5S RNA			base_one HP	base_one HP	gs-sh	
EAL domain protein			Predicted signal transduction protein containing sensor and EAL domains		CDS	Uncharacterized protein ylaB			pfam-sh	orth	gs-sh	
inner membrane protein ylaC		ylaC	sigma70 family sigma factor YlaC.		CDS	Putative inner membrane protein			gs-sh	orth	map	
maltose O-acetyltransferase	2.3.1.79	maa	Acetyltransferase (isoleucine patch superfamily)	2.3.1.79	CDS	Maltose O-acetyltransferase	2.3.1.79		base_ec	base_ec	base_ec	
hemolysin expression-modulating protein		hha	Haemolysin expression modulating protein.		CDS	Haemolysin expression modulating protein			gs-sh	orth	lit-s	
biofilm formation regulator YbaJ family protein			Biofilm formation regulator YbaJ.		CDS	FIG00948312: hypothetical protein			lit-s	0	0	
acriflavine resistance protein B		acrB	The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family		CDS	"RND efflux system, inner membrane transporter CmeB"			gs-sh	0	0	
acriflavine resistance protein A		acrA	RND family efflux transporter, MFP subunit		CDS	Acriflavine resistance protein A (AcrA)			gs-sh	gs-sh	gs-sh	
HTH-type transcriptional regulator AcrR		acrR	transcriptional regulator, TetR family		CDS	"Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family"			gs-sh	gs-sh	pfam-sh	
potassium efflux system KefA		kefA	Small-conductance mechanosensitive channel		CDS	Potassium efflux system KefA protein / Small-conductance mechanosensitive channel			gs-sh	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2496).		CDS	Putative inner membrane protein			base_one HP	base_one HP	0	
primosomal replication protein N''		priC	restart primosome assembly protein PriC		CDS	Primosomal replication protein N prime prime			gs-sh	0	0	
inner membrane protein ybaN		ybaN	Uncharacterized protein conserved in bacteria		CDS	FIG039061: hypothetical protein related to heme utilization			gs-sh	0	0	
adenine phosphoribosyltransferase	2.4.2.7	apt	adenine phosphoribosyltransferase (EC 2.4.2.7)	2.4.2.7	CDS	Adenine phosphoribosyltransferase	2.4.2.7		base_tigr	base_ec	base_ec	
DNA polymerase III, subunit gamma and tau	2.7.7.7	dnaX	DNA polymerase III, gamma subunit/DNA polymerase III, tau subunit	2.7.7.7,2.7.7.7, 2.7.7.7	CDS	DNA polymerase III subunits gamma and tau	2.7.7.7		base_tigr	base_ec	base_ec-d	
DNA-binding protein, YbaB/EbfC family			DNA-binding protein, YbaB/EbfC family		CDS	FIG000557: hypothetical protein co-occurring with RecR			base_lit-s	map	gs-sh	
recombination protein RecR		recR	DNA replication and repair protein RecR		CDS	Recombination protein RecR			base_tigr	lit-s	pfam-sh	
histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein			Molecular chaperone, HSP90 family		CDS	Chaperone protein HtpG			pfam-sh	map	gs-sh	
adenylate kinase	2.7.4.3	adk	Adenylate kinase (EC 2.7.4.3)	2.7.4.3	CDS	Adenylate kinase	2.7.4.3		base_ec	base_ec	base_ec	
acetyl esterase	3.1.1.-	aes	Esterase/lipase	3.1.1.-	CDS	Acetyl esterase	3.1.1.-		gs-sh	lit-s	map	
ferrochelatase	4.99.1.1	hemH	ferrochelatase (EC 4.99.1.1)	4.99.1.1	CDS	"Ferrochelatase, protoheme ferro-lyase"	4.99.1.1		base_tigr	base_ec	base_ec	
inosine-guanosine kinase	2.7.1.73	gsk	inosine-guanosine kinase (EC 2.7.1.73)	2.7.1.73	CDS	Inosine-guanosine kinase	2.7.1.73		base_ec	base_ec	base_ec	
inner membrane protein ybaL		ybaL	Kef-type potassium/proton antiporter, CPA2 family (TC 2.A.37.1)		CDS	POTASSIUM/PROTON ANTIPORTER ROSB			gs-sh	0	0	
fosmidomycin resistance protein		fsr	Nitrate/nitrite transporter		CDS	Fosmidomycin resistance protein			gs-sh	lit-s	map	
protein UshA	3.1.3.5	ushA	5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases	3.1.3.5, 3.6.1.45	CDS	UDP-sugar hydrolase; 5'-nucleotidase	3.6.1.45, 3.1.3.5		base_ec-d	base_ec-d	base_ec-d	
cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase ybaK		ybaK	Cys-tRNA(Pro) hydrolase	3.1.1.-	CDS	Cys-tRNA(Pro) deacylase YbaK			gs-sh	gs-sh	gs-sh	
traB family protein			Uncharacterized protein conserved in bacteria		CDS	FIG01199637: hypothetical protein			gs-sh	0	lit-s	
addiction module antidote protein, HigA family		higA	addiction module antidote protein, HigA family		CDS	HigA protein (antitoxin to HigB)			base_lit-s	gs-sh	gs-sh	
copper-translocating P-type ATPase	3.6.3.4		copper-(or silver)-translocating P-type ATPase	3.6.3.4	CDS	"Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase"	3.6.3.3, 3.6.3.5, 3.6.3.4		base_ec	base_ec-d	base_ec-d	
glutaminase A	3.5.1.2	glsA	L-glutaminase (EC 3.5.1.2)	3.5.1.2	CDS	Glutaminase	3.5.1.2		base_tigr	base_ec	base_ec	
inner membrane transport protein YbaT		ybaT	amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	Inner membrane transport protein YbaT			gs-sh	lit-s	map	
cu(I)-responsive transcriptional regulator		cueR	Cu(I)-responsive transcriptional regulator		CDS	HTH-type transcriptional regulator cueR			base_tigr	gs-sh	gs-sh	
inner membrane protein ybbJ		ybbJ	Membrane protein implicated in regulation of membrane protease activity		CDS	Putative activity regulator of membrane protease YbbK			gs-sh	0	0	
protein QmcA		qmcA	SPFH domain, Band 7 family protein		CDS	Putative stomatin/prohibitin-family membrane protease subunit YbbK			gs-sh	0	0	
conserved hypothetical protein			ABC-type uncharacterized transport system, ATPase component		CDS	YbbL ABC transporter ATP-binding protein			base_one HP	base_one HP	0	
conserved hypothetical protein			TIGR00245 family protein		CDS	YbbM seven transmembrane helix protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Thioredoxin domain-containing protein		CDS	FIG000875: Thioredoxin domain-containing protein EC-YbbN			base_one HP	base_one HP	0	
short chain dehydrogenase family protein			Short-chain dehydrogenases of various substrate specificities		CDS	Putative NAD(P)-dependent oxidoreductase EC-YbbO			0	0	0	
GDSL-like Lipase/Acylhydrolase family protein			Lysophospholipase L1 and related esterases	3.1.2.-, 3.1.1.5	CDS	Arylesterase precursor	3.1.1.2		0	0	0	
ABC transporter family protein			Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component		CDS	"Uncharacterized metabolite ABC transporter in Enterobacteriaceae, ATP-binding protein EC-YbbA"			0	0	0	
ftsX-like permease family protein			Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component		CDS	FIG00809136: hypothetical protein			gs-sh	0	0	
RHS repeat-associated core domain protein			RHS repeat-associated core domain		CDS	core protein			lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00637923: hypothetical protein			lit-s	base_one HP	base_one HP	
RHS repeat-associated core domain protein			RHS repeat-associated core domain		CDS	core protein			base_tigr	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
helix-turn-helix domain protein			Winged helix-turn helix.		CDS	hypothetical protein			0	base_one HP	base_one HP	
tRNA 2-selenouridine synthase	2.9.1.-	selU	tRNA 2-selenouridine synthase (EC 2.9.1.-)	2.9.1.-	CDS	Selenophosphate-dependent tRNA 2-selenouridine synthase			base_tigr	gs-sh	gs-sh	
HTH-type transcriptional activator AllS		allS	Transcriptional regulator		CDS	DNA-binding transcriptional activator of the allD operon			gs-sh	gs-sh	gs-sh	
ureidoglycolate hydrolase	3.5.3.19	allA	Ureidoglycolate hydrolase	3.5.3.19	CDS	Ureidoglycolate hydrolase	3.5.3.19		base_ec	base_ec	base_lit-s	
acetate operon repressor		iclR	transcriptional regulator, IclR family		CDS	Negative regulator of allantoin and glyoxylate utilization operons			gs-sh	map	orth	
glyoxylate carboligase	4.1.1.47	gcl	glyoxylate carboligase	4.1.1.47	CDS	Glyoxylate carboligase	4.1.1.47		base_lit-s	base_ec	base_ec	
hydroxypyruvate isomerase	5.3.1.22	hyi	hydroxypyruvate isomerase	5.3.1.22	CDS	Hydroxypyruvate isomerase	5.3.1.22		base_lit-s	base_ec	base_ec	
2-hydroxy-3-oxopropionate reductase	1.1.1.60		2-hydroxy-3-oxopropionate reductase	1.1.1.60	CDS	2-hydroxy-3-oxopropionate reductase	1.1.1.60		base_lit-s	base_lit-s	base_lit-s	
putative allantoin permease			NCS1 nucleoside transporter family		CDS	Allantoin permease			orth	lit-s	map	
allantoinase	3.5.2.5	allB	allantoinase	3.5.2.5	CDS	Allantoinase	3.5.2.5		base_lit-s	base_ec	base_ec	
putative purine permease ybbY			Xanthine/uracil permeases		CDS	putative transport			gs-sh	orth	orth	
glycerate kinase 1	2.7.1.31	glxK	glycerate kinase	2.7.1.31	CDS	Glycerate kinase	2.7.1.31		base_ec	base_ec	base_ec	
conserved hypothetical protein			putative allantoin catabolism protein	3.5.3.-	CDS	Ureidoglycine aminohydrolase			base_one HP	base_one HP	0	
allantoate amidohydrolase	3.5.3.9	allC	allantoate amidohydrolase	3.5.3.9	CDS	Allantoate amidohydrolase	3.5.3.9		base_lit-s	base_ec	base_ec	
ureidoglycolate dehydrogenase	1.1.1.154	allD	ureidoglycolate dehydrogenase	1.1.1.154	CDS	Ureidoglycolate dehydrogenase	1.1.1.154		base_lit-s	base_ec	base_ec	
protein fdrA		fdrA	Succinyl-CoA synthetase, alpha subunit		CDS	Protein fdrA			gs-sh	lit-s	gs-sh	
conserved hypothetical protein			hypothetical protein		CDS	Putative cytoplasmic protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF1116).		CDS	Putative cytoplasmic protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Protein of unknown function (DUF2877).		CDS	Putative cytoplasmic protein			base_one HP	base_one HP	0	
carbamate kinase	2.7.2.2	arcC	carbamate kinase (EC 2.7.2.2)	2.7.2.2	CDS	Carbamate kinase	2.7.2.2		base_tigr	base_ec	base_ec	
phosphoribosylaminoimidazole carboxylase, ATPase subunit	4.1.1.21	purK	5-(carboxyamino)imidazole ribonucleotide synthase	6.3.4.18	CDS	Phosphoribosylaminoimidazole carboxylase ATPase subunit	4.1.1.21		base_tigr	base_ec	base_ec-d	
N5-carboxyaminoimidazole ribonucleotide mutase	5.4.99.18	purE	5-(carboxyamino)imidazole ribonucleotide mutase	5.4.99.18	CDS	Phosphoribosylaminoimidazole carboxylase catalytic subunit	4.1.1.21		base_ec	base_ec-d	base_ec-d	
UDP-2,3-diacylglucosamine hydrolase	3.6.1.-	lpxH	UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.54)	3.6.1.54	CDS	"UDP-2,3-diacylglucosamine hydrolase"	3.6.1.-		base_tigr	lit-s	lit-s	
peptidyl-prolyl cis-trans isomerase B	5.2.1.8	ppiB	Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	5.2.1.8	CDS	Peptidyl-prolyl cis-trans isomerase PpiB	5.2.1.8		base_ec	base_ec	base_ec	
cysteine--tRNA ligase	6.1.1.16	cysS	cysteinyl-tRNA synthetase (EC 6.1.1.16)	6.1.1.16	CDS	Cysteinyl-tRNA synthetase	6.1.1.16		base_tigr	base_ec	base_ec	
inner membrane protein ybcI		ybcI	Predicted membrane-bound metal-dependent hydrolases		CDS	Putative membrane-bound metal-dependent hydrolases			gs-sh	orth	lit-s	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG002958: hypothetical protein			base_one HP	base_one HP	lit-s	
bifunctional protein FolD	3.5.4.9	folD	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	3.5.4.9, 1.5.1.5	CDS	Methylenetetrahydrofolate dehydrogenase (NADP+) / Methenyltetrahydrofolate cyclohydrolase	1.5.1.5, 3.5.4.9		base_ec-d	base_ec-d	base_ec-d	
type-1 fimbrial protein, A chain		fimA	P pilus assembly protein, pilin FimA		CDS	Fimbriae-like adhesin SfmA			gs-sh	0	0	
chaperone protein fimC		fimC	P pilus assembly protein, chaperone PapD		CDS	Fimbrial periplasmic chaperone SfmC			gs-sh	0	0	
type VII secretion system (T7SS), usher family protein			P pilus assembly protein, porin PapC		CDS	Outer membrane usher protein SfmD			0	0	0	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	Fimbriae-like adhesin SfmH			0	0	0	
putative fimbrial protein			P pilus assembly protein, pilin FimA		CDS	Fimbriae-like periplasmic protein SfmF			0	0	0	
bacterial regulatory s, luxR family protein			two component transcriptional regulator, LuxR family		CDS	Transcriptional regulator of fimbriae expression FimZ (LuxR/UhpA family)			gs-sh	0	0	
putative predicted protein						FIG00639671: hypothetical protein			base_one miss	lit-s	base_one miss	
phage integrase family protein			Site-specific recombinase XerD		CDS	Mobile element protein			0	0	0	
exonuclease domain protein	3.1.11.3	exo	hypothetical protein		CDS	Phage exonuclease; Putative phage-encoded enzyme involved in integration-recombination	3.1.11.3		base_one HP	base_ec	base_one HP	
replication P family protein						Putative uncharacterized protein ybcD			base_one miss	0	base_one miss	
transposase family protein			Transposase.		CDS	Mobile element protein			lit-s	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
multidrug transporter emrE		emrE	Membrane transporters of cations and cationic drugs		CDS	Ethidium bromide-methyl viologen resistance protein EmrE			gs-sh	gs-sh	gs-sh	
recombinase family protein			Site-specific recombinases, DNA invertase Pin homologs		CDS	FIG00637998: hypothetical protein			0	0	0	
			Raf kinase inhibitor-like protein, YbhB/YbcL family		CDS				base_one miss	base_both miss	base_one miss	
bacterial regulatory helix-turn-helix s, AraC family protein			AraC-type DNA-binding domain-containing proteins		CDS	"Transcriptional regulator, AraC/XylS family"			pfam-sh	pfam-sh	pfam-sh	
putative dLP12 prophage; DNA base-flipping protein			hypothetical protein		CDS	FIG00638895: hypothetical protein			base_one HP	0	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF1364).		CDS	FIG00639062: hypothetical protein			base_one HP	base_one HP	lit-s	
crossover junction endodeoxyribonuclease rusA	3.1.22.4	rusA	Holliday junction resolvase	3.1.22.4	CDS	Holliday junction resolvase / Crossover junction endodeoxyribonuclease rusA	3.1.22.-		base_ec	gs-sh	gs-sh	
phage antitermination Q family protein			Phage antitermination protein Q.		CDS	Phage antitermination protein Q			lit-s	lit-s	lit-s	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
transposase DDE domain protein			Transposase and inactivated derivatives, IS5 family		CDS	Mobile element protein			0	0	0	
outer membrane porin protein ompD		ompD	Outer membrane protein (porin)		CDS	Outer membrane porin protein NmpC precursor			gs-sh	0	0	
lysis S family protein			Lysis protein S.		CDS	Phage holin			lit-s	0	0	
putative lysozyme from lambdoid prophage DLP12			Phage-related lysozyme (muraminidase)	3.2.1.17	CDS	Probable lysozyme from lambdoid prophage DLP12	3.2.1.17		map	lit-s	base_ec	
bacteriophage lysis family protein			Bacteriophage lysis protein.	3.4.-	CDS	Endopeptidase	3.4.-.-		lit-s	0	0	
lipoprotein bor		bor	Bor protein.		CDS	Lipoprotein Bor			gs-sh	lit-s	map	
			Phage envelope protein		CDS				base_one miss	base_both miss	base_one miss	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638683: hypothetical protein			lit-s	base_one HP	base_one HP	
terminase small subunit		Nu1	Phage DNA packaging protein, Nu1 subunit of terminase		CDS	Terminase small subunit			0	lit-s	0	
caudovirales tail fibre assembly family protein			Bacteriophage tail assembly protein		CDS	Tail fiber assembly protein			0	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
caudovirales tail fibre assembly family protein			Caudovirales tail fibre assembly protein.		CDS	Phage tail fiber assembly protein			lit-s	0	0	
HTH-type transcriptional regulator AppY		appY	transcriptional regulator, AraC family		CDS	HTH-type transcriptional regulator gadW			gs-sh	gs-sh	gs-sh	
protease 7	3.4.23.49	ompT	Outer membrane protease	3.4.23.49	CDS	Protease VII (Omptin) precursor	3.4.23.49		base_ec	base_ec	base_ec	
HTH-type transcriptional regulator AdiY		adiY	transcriptional regulator, AraC family		CDS	Transcriptional regulator of catabolic arginine decarboxylase (adiA)			gs-sh	gs-sh	gs-sh	
putative n5-glutamine methyltransferase			hypothetical protein		CDS	FIG00638135: hypothetical protein			base_one HP	0	base_one HP	
TPR repeat family protein			Flp pilus assembly protein TadD, contains TPR repeats		CDS	Bacteriophage N4 adsorption protein A			0	0	0	
type II secretion system (T2SS), E, N-terminal domain protein			Glycosyltransferases, probably involved in cell wall biogenesis		CDS	Bacteriophage N4 adsorption protein B			0	0	0	
sensor kinase CusS	2.7.13.3	cusS	heavy metal sensor kinase	2.7.13.3	CDS	putative 2-component sensor protein			base_ec	0	0	
transcriptional regulatory protein CusR		cusR	heavy metal response regulator		CDS	Copper-sensing two-component system response regulator CusR			gs-sh	0	0	
putative predicted protein						hypothetical protein			base_one miss	base_one HP	base_one HP	
cation efflux system protein CusC		cusC	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family		CDS	Cation efflux system protein CusC precursor			gs-sh	orth	map	
cation efflux system protein CusF		cusF	Uncharacterized conserved protein		CDS	Cation efflux system protein CusF precursor			gs-sh	0	0	
cation efflux system protein CusB		cusB	RND family efflux transporter, MFP subunit		CDS	"Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family"			gs-sh	0	0	
cation efflux system protein CusA		cusA	heavy metal efflux pump (cobalt-zinc-cadmium)		CDS	Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA			gs-sh	0	0	
phenylalanine-specific permease		pheP	phenylalanine:proton symporter, AAT family (TC 2.A.3.1.1)		CDS	Phenylalanine-specific permease			gs-sh	lit-s	map	
miniconductance mechanosensitive channel		mscM	Small-conductance mechanosensitive channel		CDS	Uncharacterized protein ybdG			gs-sh	gs-sh	gs-sh	
oxygen-insensitive NAD(P)H nitroreductase	1.5.1.34	nfnB	Nitroreductase	1.-, 1.5.1.34	CDS	Oxygen-insensitive NAD(P)H nitroreductase / Dihydropteridine reductase	1.-.-.-, 1.5.1.34		gs-sh	tf_idf	map	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Putative cytoplasmic protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Protein of unknown function (DUF1158).		CDS	Putative inner membrane protein			base_one HP	base_one HP	0	
carboxylate-amine ligase YbdK	6.3.-.-	ybdK	carboxylate-amine ligase, YbdK family	6.3.-	CDS	FIG00638355: hypothetical protein			lit-s	0	0	
									base_both miss	base_both miss	base_both miss	
hok/gef family protein			Hok/gef family.		CDS	HokE protein			lit-s	orth	map	
transposase DDE domain protein			FOG: Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
4'-phosphopantetheinyl transferase superfamily protein			Phosphopantetheinyl transferase component of siderophore synthetase	2.7.8.-	CDS	4'-phosphopantetheinyl transferase [enterobactin] siderophore	2.7.8.-		0	0	0	
ferrienterobactin receptor		fepA	TonB-dependent siderophore receptor		CDS	"TonB-dependent receptor; Outer membrane receptor for ferric enterobactin and colicins B, D"			gs-sh	gs-sh	pfam-sh	
enterochelin esterase		fes	Enterochelin esterase and related enzymes		CDS	Enterobactin esterase			lit-s	0	0	
mbtH-like family protein			Uncharacterized protein conserved in bacteria		CDS	FIG005032: Putative cytoplasmic protein YbdZ in enterobactin biosynthesis operon			gs-sh	0	0	
enterobactin synthase component F	2.7.7.-	entF	amino acid adenylation domain	2.7.7.-	CDS	"Enterobactin synthetase component F, serine activating enzyme"	2.7.7.-		gs-sh	0	0	
ABC transporter family protein			ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components	3.6.3.34	CDS	Ferric enterobactin transport ATP-binding protein FepC (TC 3.A.1.14.2)			0	0	gs-sh	
ferric enterobactin transport protein fepE		fepE	Chain length determinant protein		CDS	Ferric enterobactin uptake protein FepE			gs-sh	0	0	
ferric enterobactin transport system permease protein fepG		fepG	ABC-type enterobactin transport system, permease component		CDS	ferric enterobactin transport protein			gs-sh	orth	map	
ferric enterobactin transport system permease protein fepD		fepD	ABC-type Fe3+-siderophore transport system, permease component		CDS	Ferric enterobactin transport system permease protein fepD			gs-sh	lit-s	gs-sh	
enterobactin exporter EntS		entS	Arabinose efflux permease		CDS	Enterobactin exporter EntS			gs-sh	lit-s	map	
ferrienterobactin-binding periplasmic protein		fepB	ABC-type Fe2+-enterobactin transport system, periplasmic component		CDS	Ferric enterobactin-binding periplasmic protein FepB (TC 3.A.1.14.2)			gs-sh	0	0	
isochorismate synthase entC	5.4.4.2	entC	isochorismate synthase (EC 5.4.4.2)	5.4.4.2	CDS	Isochorismate synthase [enterobactin] siderophore	5.4.4.2		base_ec	base_ec	base_ec	
(2,3-dihydroxybenzoyl)adenylate synthase	2.7.7.58		2,3-dihydroxybenzoate-AMP ligase	2.7.7.58	CDS	"2,3-dihydroxybenzoate-AMP ligase [enterobactin] siderophore"	2.7.7.58		base_tigr	base_ec	base_ec	
isochorismatase	3.3.2.1	entB	Isochorismate hydrolase	3.3.2.1	CDS	Isochorismatase [enterobactin] siderophore / Apo-aryl carrier domain of EntB	3.3.2.1		base_ec	base_ec	base_ec	
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase	1.3.1.28	entA	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.3.1.28	CDS	"2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [enterobactin] siderophore"	1.3.1.28		base_ec	base_ec	base_ec	
esterase YbdB	3.1.-.-	ybdB	uncharacterized domain 1		CDS	Proofreading thioesterase in enterobactin biosynthesis EntH			gs-sh	0	0	
carbon starvation protein A		cstA	Carbon starvation protein, predicted membrane protein		CDS	Carbon starvation protein A			gs-sh	lit-s	orth	
conserved hypothetical protein			Uncharacterized small protein		CDS	"COG2879, Hypothetical small protein yjiX"			base_one HP	base_one HP	gs-sh	
iron-containing alcohol dehydrogenase family protein			Glycerol dehydrogenase and related enzymes	1.1.-	CDS	Glycerol dehydrogenase	1.1.1.6		0	0	lit-s	
aminotransferase YbdL	2.6.1.-	ybdL	Aspartate/tyrosine/aromatic aminotransferase	2.6.1.-	CDS	"Methionine aminotransferase, PLP-dependent"			gs-sh	0	0	
parB-like nuclease domain protein			Predicted transcriptional regulators		CDS	Co-activator of prophage gene expression IbrB			gs-sh	0	0	
conserved hypothetical protein			Predicted phosphoadenosine phosphosulfate sulfotransferase		CDS	Co-activator of prophage gene expression IbrA			base_one HP	base_one HP	orth	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	LysR-family transcriptional regulator YbeF			gs-sh	gs-sh	gs-sh	
thioredoxin family protein			Thiol:disulfide interchange protein DsbC		CDS	Thiol:disulfide interchange protein DsbG precursor			0	0	tf_idf	
peroxiredoxin	1.11.1.15	ahpC	peroxiredoxin	1.11.1.15	CDS	Alkyl hydroperoxide reductase protein C	1.6.4.-		base_lit-s	gs-sh	map	
alkyl hydroperoxide reductase, F subunit	1.8.1.-	ahpF	alkyl hydroperoxide reductase, F subunit		CDS	Alkyl hydroperoxide reductase protein F	1.6.4.-		base_lit-s	lit-s	lit-s	
universal stress protein G		uspG	Universal stress protein UspA and related nucleotide-binding proteins		CDS	Universal stress protein G			gs-sh	lit-s	tf_idf	
zinc-binding dehydrogenase family protein			glutathione-independent formaldehyde dehydrogenase		CDS	Uncharacterized zinc-type alcohol dehydrogenase-like protein ybdR			0	0	gs-sh	
conserved hypothetical protein			hypothetical protein		CDS	FIG00639549: hypothetical protein			lit-s	base_one HP	base_one HP	
prokaryotic transcription elongation factor GreA/GreB		rnk	Transcription elongation factor		CDS	Regulator of nucleoside diphosphate kinase			gs-sh	gs-sh	orth	
ribonuclease I	3.1.27.6	rna	Ribonuclease I	3.1.27.6	CDS	Ribonuclease I precursor	3.1.27.6		base_ec	base_ec	base_ec	
citrate carrier		citT	anion transporter		CDS	Citrate Succinate antiporter (TC 2.A.47.3.2)			gs-sh	0	0	
triphosphoribosyl-dephospho-CoA synthase CitG	2.7.8.25	citG	triphosphoribosyl-dephospho-CoA synthase CitG	2.7.8.25	CDS	2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase	2.7.8.25		base_lit-s	base_ec	base_ec	
holo-ACP synthase CitX	2.7.7.61	citX	holo-ACP synthase CitX	2.7.7.61	CDS	Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase	2.7.7.61		base_lit-s	base_ec	base_ec	
citrate lyase, alpha subunit	2.8.3.10	citF	citrate lyase, alpha subunit	2.8.3.10, 4.1.3.6	CDS	Citrate lyase alpha chain	4.1.3.6		base_lit-s	base_ec-d	base_ec-d	
citrate (pro-3S)-lyase, beta subunit	4.1.3.6	citE	citrate lyase, beta subunit	4.1.3.34, 4.1.3.6	CDS	Citrate lyase beta chain	4.1.3.6		base_tigr	base_ec	base_ec-d	
citrate lyase acyl carrier protein	4.1.3.6	citD	citrate lyase acyl carrier protein	4.1.3.6	CDS	"Citrate lyase gamma chain, acyl carrier protein"	4.1.3.6		base_lit-s	base_ec	base_ec	
[citrate (pro-3S)-lyase] ligase	6.2.1.22	citC	[citrate (pro-3S)-lyase] ligase	6.2.1.22	CDS	[Citrate [pro-3S]-lyase] ligase	6.2.1.22		base_lit-s	base_ec	base_ec	
sensor histidine kinase DpiB	2.7.13.3	dpiB	Signal transduction histidine kinase regulating citrate/malate metabolism	2.7.13.3	CDS	"Sensor kinase CitA, DpiB"	2.7.3.-		base_ec	gs-sh	gs-sh	
transcriptional regulatory protein DpiA		dpiA	Response regulator of citrate/malate metabolism		CDS	"Transcriptional regulatory protein CitB, DpiA"			gs-sh	gs-sh	gs-sh	
transporter, anaerobic C4-dicarboxylate uptake C family protein			c4-dicarboxylate anaerobic carrier family protein		CDS	C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)			base_tigr	tf_idf	map	
antimicrobial peptide resistance and lipid A acylation PagP family protein			Antimicrobial peptide resistance and lipid A acylation PagP	2.3.1.-	CDS	"Lipid A acylation protein PagP, palmitoyltransferase"			lit-s	pfam-sh	pfam-sh	
RNA chaperone, negative regulator of cspA transcription		cspE	cold shock protein E (CspE)		CDS	Cold shock protein CspE			gs-sh	0	0	
									base_both miss	base_both miss	base_both miss	
protein CrcB		crcB	camphor resistance protein CrcB		CDS	CrcB protein			gs-sh	lit-s	gs-sh	
putative amidase			hypothetical protein		CDS	Carbon-nitrogen hydrolase			base_one HP	0	base_one HP	
carbon-nitrogen hydrolase family protein			Predicted amidohydrolase		CDS	Carbon-nitrogen hydrolase			0	lit-s	0	
twin arginine-targeting translocase, TatA/E family protein		tatA	Sec-independent protein translocase TatE		CDS	Twin-arginine translocation protein TatE			base_tigr	0	0	
lipoyl synthase	2.8.1.8	lipA	lipoate synthase	2.8.1.8	CDS	Lipoate synthase			base_tigr	gs-sh	lit-s	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	LysR-family transcriptional regulator YbeF			gs-sh	gs-sh	gs-sh	
lipoyl(octanoyl) transferase	2.3.1.181	lipB	lipoate-protein ligase B	2.3.1.181	CDS	Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase			base_tigr	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Proposed lipoate regulatory protein YbeD			base_one HP	base_one HP	0	
D-alanyl-D-alanine carboxypeptidase dacA	3.5.2.6	dacA	penicillin-binding protein 6. Serine peptidase. MEROPS family S11	3.4.16.4	CDS	D-alanyl-D-alanine carboxypeptidase	3.4.16.4		base_ec-d	base_ec-d	base_ec	
rare lipoprotein A		rlpA	rare lipoprotein A		CDS	Rare lipoprotein A precursor			base_lit-s	gs-sh	tf_idf	
rod shape-determining protein RodA		mrdB	cell elongation-specific peptidoglycan biosynthesis regulator RodA		CDS	rod shape-determining membrane protein			base_tigr	gs-sh	map	
penicillin-binding protein 2		mrdA	penicillin-binding protein 2		CDS	Penicillin-binding protein 2 (PBP-2)			base_lit-s	tf_idf	tf_idf	
rRNA large subunit m3Psi methyltransferase RlmH	2.1.-.-	rlmH	23S rRNA (pseudouridine-1915-N(3)-) methyltransferase	2.1.1.177	CDS	LSU m3Psi1915 methyltransferase RlmH			base_tigr	0	0	
conserved hypothetical protein			iojap-like ribosome-associated protein		CDS	Iojap protein			base_one HP	base_one HP	0	
alpha-ribazole phosphatase	3.1.3.73	cobC	alpha-ribazole phosphatase	3.1.3.73	CDS	Alpha-ribazole-5'-phosphate phosphatase	3.1.3.73		base_lit-s	base_ec	base_ec	
nicotinate (nicotinamide) nucleotide adenylyltransferase	2.7.7.18	nadD	nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	2.7.7.18	CDS	Nicotinate-nucleotide adenylyltransferase	2.7.7.18		base_ec	base_ec	base_ec	
DNA polymerase III, delta subunit	2.7.7.7	holA	DNA polymerase III, delta subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III delta subunit	2.7.7.7		base_tigr	base_ec	base_ec	
LPS-assembly lipoprotein lptE		lptE	Rare lipoprotein B		CDS	LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B)			gs-sh	map	tf_idf	
leucine--tRNA ligase	6.1.1.4	leuS	leucyl-tRNA synthetase (EC 6.1.1.4)	6.1.1.4	CDS	Leucyl-tRNA synthetase	6.1.1.4		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF1451).		CDS	COG2433: Uncharacterized conserved protein			base_one HP	base_one HP	lit-s	
sel1 repeat family protein			FOG: TPR repeat, SEL1 subfamily		CDS	FIG00639187: hypothetical protein			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF1266).		CDS	Uncharacterized protein YbeR			base_one HP	base_one HP	0	
dnaJ domain protein			DnaJ domain.		CDS	FIG00638911: hypothetical protein			lit-s	0	0	
sel1 repeat family protein			Sel1 repeat.		CDS	FIG00639103: hypothetical protein			lit-s	0	0	
conserved hypothetical protein			Protein of unknown function (DUF1266).		CDS	FIG00637867: hypothetical protein			base_one HP	base_one HP	lit-s	
dnaJ domain protein			hypothetical protein		CDS	FIG00638911: hypothetical protein			base_one HP	0	base_one HP	
hsp70 family protein			Molecular chaperone		CDS	Chaperone protein DnaK			0	0	gs-sh	
pyrimidine-specific ribonucleoside hydrolase rihA	3.2.-.-	rihA	Inosine-uridine nucleoside N-ribohydrolase	3.2.-	CDS	Inosine-uridine preferring nucleoside hydrolase	3.2.2.1		gs-sh	orth	orth	
ABC transporter family protein			L-glutamate ABC transporter ATP-binding protein/L-aspartate ABC transporter ATP-binding protein	3.6.3.-	CDS	Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4)			0	0	0	
amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein			L-glutamate ABC transporter membrane protein/L-aspartate ABC transporter membrane protein		CDS	Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4)			base_tigr	0	0	
amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein			L-glutamate ABC transporter membrane protein/L-aspartate ABC transporter membrane protein		CDS	Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)			base_tigr	0	0	
									base_both miss	base_both miss	base_both miss	
glutamate/aspartate periplasmic-binding protein		gltI	L-glutamate-binding protein/L-aspartate-binding protein		CDS	Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4)			gs-sh	0	0	
transposase DDE domain protein			Transposase and inactivated derivatives, IS5 family		CDS	Mobile element protein			0	0	0	
apolipoprotein N-acyltransferase	2.3.1.-	lnt	Apolipoprotein N-acyltransferase	2.3.1.-	CDS	Apolipoprotein N-acyltransferase / Copper homeostasis protein CutE	2.3.1.-		base_tigr	0	0	
magnesium and cobalt efflux protein CorC		corC	Putative Mg2+ and Co2+ transporter CorC		CDS	Magnesium and cobalt efflux protein CorC			gs-sh	lit-s	gs-sh	
putative rRNA maturation factor YbeY			metalloprotein, YbeY/UPF0054 family		CDS	"Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly"			gs-sh	gs-sh	gs-sh	
phoH-like protein		ybeZ	Phosphate starvation-inducible protein PhoH, predicted ATPase		CDS	Phosphate starvation-inducible ATPase PhoH with RNA binding motif			gs-sh	gs-sh	pfam-sh	
tRNA-i(6)A37 thiotransferase enzyme MiaB	2.-.-.-	miaB	tRNA-i(6)A37 thiotransferase enzyme MiaB		CDS	tRNA-i(6)A37 methylthiotransferase			base_lit-s	gs-sh	gs-sh	
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	1.14.13.-	ubiF	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family	1.14.13.-	CDS	"2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase"	1.14.13.-		gs-sh	lit-s	map	
asparagine synthase	6.3.5.4	asnB	asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4)	6.3.5.4	CDS	Asparagine synthetase [glutamine-hydrolyzing]	6.3.5.4		base_tigr	base_ec	base_ec	
putative lipoprotein						putative lipoprotein			base_one miss	base_lit-s	base_one miss	
HAD hydrolase, IA, variant 1 family protein			Predicted sugar phosphatases of the HAD superfamily		CDS	Phosphatase NagD predicted to act in N-acetylglucosamine utilization subsystem			pfam-sh	0	0	
ROK family protein			N-acetylglucosamine repressor, NagC		CDS	"N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family"			map	pfam-sh	gs-sh	
N-acetylglucosamine-6-phosphate deacetylase	3.5.1.25	nagA	N-acetylglucosamine 6-phosphate deacetylase (EC 3.5.1.25)	3.5.1.25	CDS	N-acetylglucosamine-6-phosphate deacetylase	3.5.1.25		base_tigr	base_lit-s	base_ec	
glucosamine-6-phosphate deaminase	3.5.99.6	nagB	glucosamine-6-phosphate deaminase (EC 3.5.99.6)	3.5.99.6	CDS	Glucosamine-6-phosphate deaminase	3.5.99.6		base_tigr	base_ec	base_ec	
PTS system, N-acetylglucosamine-specific IIBC component	2.7.1.69	nagE	PTS system N-acetylglucosamine-specific IIA component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)		CDS	"PTS system, N-acetylglucosamine-specific IIA component / PTS system, N-acetylglucosamine-specific IIB component / PTS system, N-acetylglucosamine-specific IIC component"	2.7.1.69, 2.7.1.69, 2.7.1.69		gs-sh	base_ec-d	0	
glutamine--tRNA ligase	6.1.1.18	glnS	glutaminyl-tRNA synthetase (EC 6.1.1.18)	6.1.1.18	CDS	Glutaminyl-tRNA synthetase	6.1.1.18		base_tigr	base_ec	base_ec	
outer membrane porin, OprD family protein			outer membrane porin, OprD family.		CDS	N-acetylglucosamine-regulated outer membrane porin			lit-s	0	0	
ybfN-like lipofamily protein			YbfN-like lipoprotein.		CDS	Hypothetical lipoprotein ybfN precursor			gs-sh	gs-sh	gs-sh	
ferric uptake regulation protein		fur	Fe2+/Zn2+ uptake regulation proteins		CDS	Ferric uptake regulation protein FUR			gs-sh	orth	orth	
flavodoxin			flavodoxin, long chain		CDS	Flavodoxin 1			base_tigr	orth	map	
ribbon-helix-helix , copG family protein			Ribbon-helix-helix protein, copG family.		CDS	Uncharacterized protein ybfE			lit-s	gs-sh	gs-sh	
esterase ybfF	3.1.-.-	ybfF	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	Esterase ybfF	3.1.-.-		gs-sh	lit-s	gs-sh	
protein seqA		seqA	negative regulator of replication initiation SeqA		CDS	"SeqA protein, negative modulator of initiation of replication"			gs-sh	orth	pfam-sh	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
phosphoglucomutase, alpha-D-glucose phosphate-specific	5.4.2.2	pgm	phosphoglucomutase, alpha-D-glucose phosphate-specific	5.4.2.2	CDS	Phosphoglucomutase	5.4.2.2		base_lit-s	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	Hypothetical lipoprotein ybfP precursor			lit-s	base_one HP	base_one HP	
conserved hypothetical protein						FIG00638110: hypothetical protein			base_one HP	base_one HP	base_one miss	
conserved hypothetical protein			Protein of unknown function DUF2625.		CDS	FIG00638110: hypothetical protein			base_one HP	base_one HP	lit-s	
putrescine-ornithine antiporter		potE	putrescine:ornithine antiporter, APA family (TC 2.A.3.2.1)		CDS	"Putrescine/proton symporter, putrescine/ornithine antiporter PotE"			gs-sh	gs-sh	gs-sh	
orn/Lys/Arg decarboxylase, N-terminal domain protein			ornithine decarboxylase (EC 4.1.1.17)	4.1.1.17	CDS	Ornithine decarboxylase	4.1.1.17		gs-sh	map	base_ec	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
KDP operon transcriptional regulatory protein KdpE		kdpE	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	DNA-binding response regulator KdpE			gs-sh	orth	map	
sensor protein KdpD	2.7.13.3	kdpD	Osmosensitive K+ channel histidine kinase	2.7.13.3	CDS	Osmosensitive K+ channel histidine kinase KdpD	2.7.3.-		base_ec	pfam-sh	gs-sh	
K+-transporting ATPase, C subunit	3.6.3.12	kdpC	K+-transporting ATPase, C subunit	3.6.3.12	CDS	Potassium-transporting ATPase C chain (TC 3.A.3.7.1)	3.6.3.12		base_lit-s	base_ec	base_ec	
K+-transporting ATPase, B subunit	3.6.3.12	kdpB	K+-transporting ATPase, B subunit	3.6.3.12	CDS	Potassium-transporting ATPase B chain (TC 3.A.3.7.1)	3.6.3.12		base_lit-s	base_ec	base_ec	
K+-transporting ATPase, A subunit	3.6.3.12	kdpA	K+-transporting ATPase, KdpA	3.6.3.12	CDS	Potassium-transporting ATPase A chain (TC 3.A.3.7.1)	3.6.3.12		base_tigr	base_ec	base_ec	
K+-transporting ATPase, F subunit	3.6.3.12	kdpF				FIG00637855: hypothetical protein			base_one miss	0	base_one miss	
conserved hypothetical protein			Protein of unknown function (DUF2517).		CDS	Putative exported protein			base_one HP	base_one HP	0	
protein rhsC		rhsC	RHS repeat-associated core domain		CDS	core protein			gs-sh	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
RHS repeat-associated core domain protein			RHS repeat-associated core domain		CDS	core protein			base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	"orf, hypothetical protein"			lit-s	base_one HP	base_one HP	
DDE_Tnp_1-associated family protein			Transposase		CDS	Mobile element protein			0	0	0	
H repeat-associated protein yhhI		yhhI	Transposase		CDS	Mobile element protein			gs-sh	0	0	
H repeat-associated protein ydcC		ydcC	Transposase		CDS	Mobile element protein			gs-sh	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG143828: Hypothetical protein YbgA			base_one HP	base_one HP	0	
deoxyribodipyrimidine photo-lyase	4.1.99.3	phrB	deoxyribodipyrimidine photo-lyase type I	4.1.99.3	CDS	Deoxyribodipyrimidine photolyase	4.1.99.3		base_ec	base_ec	base_ec	
dipeptide permease D		dtpD	amino acid/peptide transporter (Peptide:H+ symporter), bacterial		CDS	Di/tripeptide permease YbgH			gs-sh	0	0	
conserved hypothetical protein			dinuclear metal center protein, YbgI/SA1388 family		CDS	FIG137478: Hypothetical protein YbgI			base_one HP	base_one HP	0	
allophanate hydrolase subunit 1 family protein			TIGR00370 family protein		CDS	Allophanate hydrolase 2 subunit 1	3.5.1.54		0	0	0	
conserved hypothetical protein			biotin-dependent carboxylase uncharacterized domain		CDS	Allophanate hydrolase 2 subunit 2	3.5.1.54		base_one HP	base_one HP	0	
conserved hypothetical protein			Uncharacterized proteins, homologs of lactam utilization protein B		CDS	Lactam utilization protein LamB			base_one HP	base_one HP	0	
membrane AbrB duplication domain protein			membrane protein AbrB duplication		CDS	Putative transport protein			base_tigr	0	0	
endonuclease 8	4.2.99.18	nei	Formamidopyrimidine-DNA glycosylase	3.2.2.-, 4.2.99.18	CDS	Endonuclease VIII			gs-sh	gs-sh	gs-sh	
fimbrial family protein			Fimbrial protein.		CDS	FIG00637862: hypothetical protein			lit-s	0	0	
chaperone protein papD		papD	P pilus assembly protein, chaperone PapD		CDS	Putative chaperone			gs-sh	0	0	
type VII secretion system (T7SS), usher family protein			P pilus assembly protein, porin PapC		CDS	Uncharacterized outer membrane usher protein yqiG precursor			0	0	gs-sh	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	Uncharacterized fimbrial-like protein ygiL precursor			0	0	gs-sh	
citrate (Si)-synthase	2.3.3.1	gltA	citrate synthase (EC 2.3.3.1)	2.3.3.1	CDS	Citrate synthase (si)	2.3.3.1		base_tigr	base_ec	base_ec	
succinate dehydrogenase, cytochrome b556 subunit		sdhC	succinate dehydrogenase subunit C	1.3.5.1	CDS	Succinate dehydrogenase cytochrome b-556 subunit			base_tigr	gs-sh	map	
succinate dehydrogenase, hydrophobic membrane anchor protein		sdhD	succinate dehydrogenase subunit D	1.3.5.1	CDS	Succinate dehydrogenase hydrophobic membrane anchor protein			base_tigr	lit-s	map	
succinate dehydrogenase, flavoprotein subunit		sdhA	succinate dehydrogenase subunit A	1.3.99.1,1.3.5.1	CDS	Succinate dehydrogenase flavoprotein subunit	1.3.99.1		gs-sh	lit-s	base_ec-d	
succinate dehydrogenase iron-sulfur subunit	1.3.99.1	sdhB	succinate dehydrogenase and fumarate reductase iron-sulfur protein	1.3.99.1	CDS	Succinate dehydrogenase iron-sulfur protein	1.3.99.1		base_ec	base_ec	base_ec	
oxoglutarate dehydrogenase (succinyl-transferring), E1 component	1.2.4.2	sucA	2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	1.2.4.2	CDS	2-oxoglutarate dehydrogenase E1 component	1.2.4.2		base_tigr	base_ec	base_ec	
dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex	2.3.1.61	sucB	2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61)	2.3.1.61	CDS	Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex	2.3.1.61		base_tigr	base_ec	base_ec	
succinyl-CoA ligase [ADP-forming] subunit beta	6.2.1.5	sucC	succinyl-CoA synthetase (ADP-forming) beta subunit (EC 6.2.1.5)	6.2.1.5	CDS	Succinyl-CoA ligase [ADP-forming] beta chain	6.2.1.5		base_ec	base_ec	base_ec	
succinyl-CoA ligase [ADP-forming] subunit alpha	6.2.1.5	sucD	succinyl-CoA synthetase (ADP-forming) alpha subunit (EC 6.2.1.5)	6.2.1.5	CDS	Succinyl-CoA ligase [ADP-forming] alpha chain	6.2.1.5		base_ec	base_ec	base_ec	
mannosyl-D-glycerate transport/metabolism system repressor mngR		mngR	transcriptional regulator, GntR family		CDS	Transcriptional regulator of succinyl CoA synthetase operon			gs-sh	0	0	
heat-responsive suppressor hrsA	2.7.1.69	hrsA	PTS system mannosylglycerate-specific IIA component, Fru family (TC 4.A.2.1.3)/PTS system mannosylglycerate-specific IIB component, Fru family (TC 4.A.2.1.3)/PTS system mannosylglycerate-specific IIC component, Fru family (TC 4.A.2.1.3)		CDS	PTS system HrsA EIIA component / PTS system HrsA EIIB component / PTS system HrsA permease IIC component			gs-sh	0	0	
alpha-mannosidase mngB	3.2.1.-	mngB	Alpha-mannosidase	3.2.1.170	CDS	Alpha-mannosidase	3.2.1.24		gs-sh	gs-sh	base_lit-s	
						FIG00640343: hypothetical protein			base_both miss	base_one miss	base_one miss	
cytochrome d ubiquinol oxidase subunit 1	1.10.3.-	cydA	cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein	1.10.3.-,1.10.3.10	CDS	Cytochrome d ubiquinol oxidase subunit I	1.10.3.-		gs-sh	gs-sh	map	
cytochrome d ubiquinol oxidase, subunit II	1.10.3.-	cydB	cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein	1.10.3.-,1.10.3.10	CDS	Cytochrome d ubiquinol oxidase subunit II	1.10.3.-		base_tigr	lit-s	map	
cyd operon protein YbgE			cyd operon protein YbgE		CDS	Protein YbgE			base_lit-s	0	0	
tol-pal system-associated acyl-CoA thioesterase	3.1.2.-	ybgC	tol-pal system-associated acyl-CoA thioesterase	3.1.2.-	CDS	4-hydroxybenzoyl-CoA thioesterase family active site			base_lit-s	0	0	
protein TolQ		tolQ	Cell division and transport-associated protein TolQ (TC 2.C.1.2.1)		CDS	MotA/TolQ/ExbB proton channel family protein			base_tigr	gs-sh	gs-sh	
protein TolR		tolR	Cell division and transport-associated protein TolR (TC 2.C.1.2.1)		CDS	"Tol biopolymer transport system, TolR protein"			base_tigr	gs-sh	gs-sh	
protein TolA		tolA	Cell division and transport-associated protein TolA (TC 2.C.1.2.1)		CDS	TolA protein			base_tigr	lit-s	pfam-sh	
tol-Pal system beta propeller repeat protein TolB		tolB	tol-pal system beta propeller repeat protein TolB		CDS	"tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins"			base_tigr	gs-sh	gs-sh	
peptidoglycan-associated lipoprotein		pal	peptidoglycan-associated lipoprotein		CDS	18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor			base_lit-s	gs-sh	gs-sh	
tol-pal system protein YbgF		ygbF	tol-pal system protein YbgF		CDS	TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain			base_lit-s	0	0	
quinolinate synthetase complex, A subunit	2.5.1.72	nadA	quinolinate synthetase (EC 2.5.1.72)	2.5.1.72	CDS	Quinolinate synthetase	2.5.1.72		base_tigr	base_ec	base_ec	
zinc transporter zitB		zitB	cation diffusion facilitator family transporter		CDS	Zinc transporter ZitB			gs-sh	lit-s	map	
nicotinamide riboside transporter pnuC		pnuC	nicotinamide mononucleotide transporter PnuC		CDS	"Ribosyl nicotinamide transporter, PnuC-like"			gs-sh	gs-sh	map	
ybgS-like family protein			YbgS-like protein.		CDS	Probable secreted protein			lit-s	0	0	
3-deoxy-7-phosphoheptulonate synthase	2.5.1.54		3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54)	2.5.1.54	CDS	2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha	2.5.1.54		base_tigr	base_ec	base_ec	
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	5.4.2.1	gpmA	phosphoglycerate mutase (EC 5.4.2.1)	5.4.2.1	CDS	Phosphoglycerate mutase	5.4.2.1		base_ec	base_ec	base_ec	
galactose mutarotase	5.1.3.-	galM	aldose 1-epimerase (EC 5.1.3.3)	5.1.3.3	CDS	Aldose 1-epimerase	5.1.3.3		base_tigr	gs-sh	base_ec	
galactokinase	2.7.1.6	galK	galactokinase (EC 2.7.1.6)	2.7.1.6	CDS	Galactokinase	2.7.1.6		base_tigr	base_ec	base_ec	
galactose-1-phosphate uridylyltransferase	2.7.7.10	galT	UTP-hexose-1-phosphate uridylyltransferase/UDP-glucose-hexose-1-phosphate uridylyltransferase	2.7.7.12,2.7.7.10, 2.7.7.12	CDS	Galactose-1-phosphate uridylyltransferase	2.7.7.10		base_tigr	base_ec	base_ec-d	
UDP-glucose 4-epimerase	5.1.3.2	galE	UDP-galactose 4-epimerase (EC 5.1.3.2)	5.1.3.2	CDS	UDP-N-acetylglucosamine 4-epimerase / UDP-glucose 4-epimerase	5.1.3.7, 5.1.3.2		base_tigr	base_ec-d	base_ec-d	
ABC transporter family protein			ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA		CDS	Putative molybdenum transport ATP-binding protein modF			0	0	gs-sh	
transcriptional regulator modE		modE	molybdate transport repressor, ModE		CDS	DNA-binding domain of ModE / Molybdate-binding domain of ModE			gs-sh	gs-sh	gs-sh	
molybdate ABC transporter, periplasmic molybdate-binding protein		modA	molybdenum ABC transporter, periplasmic molybdate-binding protein		CDS	"Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)"			base_tigr	gs-sh	gs-sh	
molybdate ABC transporter, permease protein		modB	molybdate ABC transporter, permease protein		CDS	Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)			base_lit-s	gs-sh	map	
molybdate ABC transporter, ATP-binding protein	3.6.3.29	modC	molybdenum ABC transporter, ATP-binding protein	3.6.3.29	CDS	Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)			base_ec	gs-sh	gs-sh	
cof-like hydrolase family protein			HAD-superfamily hydrolase, subfamily IIB		CDS	Putative phosphatase			gs-sh	0	0	
lactonase, 7-bladed beta-propeller family protein			3-carboxymuconate cyclase	3.1.1.31	CDS	6-phosphogluconolactonase	3.1.1.31		0	0	base_ec	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	LysR family transcriptional regulator YbhD			gs-sh	gs-sh	gs-sh	
prpF family protein			Uncharacterized protein conserved in bacteria		CDS	FIG00637898: hypothetical protein			gs-sh	0	lit-s	
inner membrane protein ybhI		ybhI	anion transporter		CDS	2-oxoglutarate/malate translocator			gs-sh	gs-sh	map	
aconitase C-terminal domain protein			Aconitase A	4.2.1.3	CDS	Putative enzyme			0	0	0	
putative acyl-CoA thioester hydrolase ybhC			Pectin methylesterase	3.1.1.11	CDS	Pectinesterase	3.1.1.11		gs-sh	gs-sh	base_ec	
conserved hypothetical protein			phospholipid-binding protein, PBP family		CDS	UPF0098 protein ybhB			base_one HP	base_one HP	gs-sh	
adenosylmethionine-8-amino-7-oxononanoate transaminase	2.6.1.62	bioA	adenosylmethionine-8-amino-7-oxononanoate transaminase	2.6.1.62	CDS	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	2.6.1.62		base_lit-s	base_ec	base_ec	
biotin synthase	2.8.1.6	bioB	biotin synthase (EC 2.8.1.6)	2.8.1.6	CDS	Biotin synthase	2.8.1.6		base_tigr	base_ec	base_ec	
8-amino-7-oxononanoate synthase	2.3.1.47	bioF	8-amino-7-oxononanoate synthase (EC 2.3.1.47)	2.3.1.47	CDS	8-amino-7-oxononanoate synthase	2.3.1.47		base_tigr	base_lit-s	base_ec	
malonyl-CoA O-methyltransferase BioC	2.1.1.197	bioC	pimeloyl-CoA biosynthesis protein BioC	2.1.1.197	CDS	Biotin synthesis protein BioC			base_ec	0	0	
dethiobiotin synthase	6.3.3.3	bioD	dethiobiotin synthase	6.3.3.3	CDS	Dethiobiotin synthetase	6.3.3.3		base_lit-s	base_ec	base_ec	
excinuclease ABC subunit B	3.1.25.-	uvrB	Excinuclease ABC subunit B		CDS	Excinuclease ABC subunit B			base_tigr	lit-s	base_lit-s	
conserved hypothetical family protein			conserved hypothetical protein, cofD-related		CDS	hypothetical protein			base_tigr	base_one HP	base_one HP	
molybdenum cofactor biosynthesis protein A		moaA	cyclic pyranopterin monophosphate synthase subunit MoaA	4.1.99.18	CDS	Molybdenum cofactor biosynthesis protein MoaA			base_tigr	gs-sh	gs-sh	
molybdenum cofactor biosynthesis protein B		moaB	molybdenum cofactor biosynthesis protein B, proteobacterial		CDS	Molybdenum cofactor biosynthesis protein MoaB			gs-sh	gs-sh	gs-sh	
molybdenum cofactor biosynthesis protein C		moaC	cyclic pyranopterin monophosphate synthase subunit MoaC	4.1.99.18	CDS	Molybdenum cofactor biosynthesis protein MoaC			base_tigr	gs-sh	pfam-sh	
molybdopterin converting factor, subunit 1		moaD	molybdopterin synthase subunit MoaD	2.8.1.12	CDS	Molybdenum cofactor biosynthesis protein MoaD			base_tigr	gs-sh	gs-sh	
molybdopterin synthase catalytic subunit	2.-.-.-	moaE	molybdopterin synthase subunit MoaE	2.-,2.8.1.12	CDS	Molybdenum cofactor biosynthesis protein MoaE			gs-sh	map	pfam-sh	
inner membrane protein YbhL		ybhL	Integral membrane protein, interacts with FtsH		CDS	Putative membrane protein			gs-sh	orth	map	
inhibitor of apoptosis-promoting Bax1 family protein			Integral membrane protein, interacts with FtsH		CDS	hypothetical protein			0	base_one HP	base_one HP	
inner membrane protein ybhN		ybhN	Predicted integral membrane protein		CDS	Inner membrane protein YbhQ			gs-sh	0	0	
putative cardiolipin synthase YbhO			Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes	2.7.8.-	CDS	Cardiolipin synthetase	2.7.8.-		0	orth	0	
endonuclease/Exonuclease/phosphatase family protein			Metal-dependent hydrolase		CDS	Endonuclease/Exonuclease/phosphatase family protein			0	lit-s	0	
inner membrane transport permease ybhR		ybhR	ABC-type multidrug transport system, permease component		CDS	"ABC transport system, permease component YbhR"			gs-sh	0	0	
inner membrane protein ybhQ		ybhQ	Putative inner membrane protein YbhQ.		CDS	Putative inner membrane protein			lit-s	orth	tf_idf	
inner membrane transport permease ybhS		ybhS	ABC-type multidrug transport system, permease component		CDS	"ABC transport system, permease component YbhS"			gs-sh	0	0	
heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	ABC-type multidrug transport system, ATPase component		CDS	"ABC transporter multidrug efflux pump, fused ATP-binding domains"			gs-sh	0	0	
efflux transporter, RND family, MFP subunit			Multidrug resistance efflux pump		CDS	"Predicted membrane fusion protein (MFP) component of efflux pump, membrane anchor protein YbhG"			0	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator YbiH, TetR family"			gs-sh	gs-sh	pfam-sh	
ATP-dependent RNA helicase rhlE	3.6.4.13	rhlE	Superfamily II DNA and RNA helicases	3.6.4.13	CDS	ATP-dependent RNA helicase RhlE			base_ec	lit-s	map	
swarming motility protein ybiA		ybiA	conserved hypothetical protein, ribA/ribD-fused		CDS	Uncharacterized protein COG3236			gs-sh	0	0	
DEAD/DEAH box helicase family protein			Rad3-related DNA helicases	3.6.4.12	CDS	ATP-dependent helicase DinG/Rad3			0	0	gs-sh	
glycosyl transferase family, helical bundle domain protein			Anthranilate phosphoribosyltransferase		CDS	Anthranilate phosphoribosyltransferase like	2.4.2.18		0	0	lit-s	
conserved hypothetical protein			Malate/L-lactate dehydrogenases	1.1.1.-	CDS	Malate dehydrogenase	1.1.1.37		base_one HP	base_one HP	0	
multiple stress resistance protein BhsA		bhsA	Protein of unknown function (DUF1471).		CDS	Putative exported protein			gs-sh	0	0	
conserved hypothetical protein			transcriptional regulator, TraR/DksA family		CDS	Hypothetical Zinc-finger containing protein			base_one HP	base_one HP	0	
PKHD-type hydroxylase Sbal_3634	1.14.11.-		Uncharacterized iron-regulated protein	1.14.11.-	CDS	Iron-uptake factor PiuC			0	0	gs-sh	
catecholate siderophore receptor fiu		fiu	TonB-dependent siderophore receptor		CDS	Ferrichrome-iron receptor			gs-sh	0	0	
multiple stress resistance protein BhsA		bhsA	Protein of unknown function (DUF1471).		CDS	hypothetical protein			gs-sh	base_one HP	base_one HP	
mechanosensitive ion channel family protein			Small-conductance mechanosensitive channel		CDS	Potassium efflux system KefA protein / Small-conductance mechanosensitive channel			0	0	0	
ribosomal RNA large subunit methyltransferase F	2.1.1.181	rlmF	23S rRNA m(6)A-1618 methyltransferase	2.1.1.181,2.1.1.48	CDS	Ribosomal RNA large subunit methyltransferase F	2.1.1.51		base_ec-d	base_ec-d	base_ec-d	
ABC transporter family protein			L-glutamine ABC transporter ATP-binding protein	3.6.3.-	CDS	Glutamate transport ATP-binding protein			0	0	0	
amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein			L-glutamine ABC transporter membrane protein		CDS	Glutamate transport membrane-spanning protein			base_tigr	0	0	
bacterial extracellular solute-binding s, 3 family protein			L-glutamine-binding protein		CDS	"Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)"			0	0	0	
DNA protection during starvation protein	1.16.-.-	dps	DNA-binding ferritin-like protein (oxidative damage protectant)		CDS	Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase	1.16.3.1		gs-sh	0	0	
inner membrane transporter rhtA		rhtA	Predicted permease, DMT superfamily		CDS	Putative DMT superfamily metabolite efflux protein precursor			gs-sh	0	0	
outer membrane protein X		ompX	Opacity protein and related surface antigens		CDS	Outer membrane protein X precursor			gs-sh	orth	map	
putative phosphoethanolamine transferase ybiP			Predicted membrane-associated, metal-dependent hydrolase		CDS	Putative integral membrane protein			gs-sh	0	0	
transcriptional regulator mntR		mntR	iron (metal) dependent repressor, DtxR family		CDS	Mn-dependent transcriptional regulator MntR			gs-sh	0	0	
inner membrane protein YbiR		ybiR	transporter, YbiR family		CDS	Putative membrane protein			gs-sh	orth	map	
putative L,D-transpeptidase YbiS			Uncharacterized protein conserved in bacteria		CDS	"L,D-transpeptidase YbiS"			0	lit-s	0	
heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	ATPase components of ABC transporters with duplicated ATPase domains		CDS	Putative ATPase component of ABC transporter with duplicated ATPase domain			gs-sh	map	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF1479).		CDS	FIG01046262: hypothetical protein			base_one HP	base_one HP	lit-s	
sugar phosphatase SupH	3.1.3.23	supH	HAD-superfamily hydrolase, subfamily IIB	3.1.3.23	CDS	Hydrolase (HAD superfamily)			base_ec	orth	pfam-sh	
glycyl radical enzyme, PFL2/glycerol dehydratase family protein			pyruvate formate-lyase	2.3.1.54	CDS	Pyruvate formate-lyase	2.3.1.54		base_tigr	map	base_ec	
glycyl-radical enzyme activating family protein	1.97.1.-		glycyl-radical enzyme activating protein family	1.97.1.4	CDS	Pyruvate formate-lyase activating enzyme	1.97.1.4		base_tigr	map	base_ec	
fructose-6-phosphate aldolase	4.1.2.-	fsa	fructose 6-phosphate aldolase (EC 4.1.2.-)	4.1.2.-	CDS	Transaldolase	2.2.1.2		base_tigr	0	0	
molybdopterin synthase sulfurylase MoeB		moeB	[molybdopterin synthase] sulfurylase		CDS	Molybdopterin biosynthesis protein MoeB			base_tigr	0	0	
molybdopterin molybdenumtransferase	2.-.-.-	moeA	molybdopterin molybdochelatase	2.10.1.1	CDS	Molybdopterin biosynthesis protein MoeA			gs-sh	gs-sh	gs-sh	
isoaspartyl peptidase	3.4.19.5	iaaA	asparaginase	3.4.19.5,3.5.1.1	CDS	Isoaspartyl aminopeptidase @ Asp-X dipeptidase	3.4.19.5		base_ec-d	base_ec	base_ec-d	
nickel import ATP-binding protein NikE	3.6.3.24	nikE	ATPase components of various ABC-type transport systems, contain duplicated ATPase		CDS	Glutothione ABC transporter ATP-binding protein			gs-sh	0	0	
glutathione-binding protein gsiB		gsiB	ABC-type dipeptide transport system, periplasmic component		CDS	"Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein"			gs-sh	0	0	
glutathione transport system permease protein gsiC		gsiC	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)			gs-sh	gs-sh	gs-sh	
glutathione transport system permease protein gsiD		gsiD	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)			gs-sh	gs-sh	gs-sh	
putative cyclic di-GMP phosphodiesterase YliE			FOG: EAL domain		CDS	FIG00638993: hypothetical protein			0	0	0	
diguanylate cyclase domain protein			diguanylate cyclase (GGDEF) domain		CDS	COG2199: FOG: GGDEF domain			base_tigr	map	pfam-sh	
ribosomal protein S12 methylthiotransferase RimO		rimO	SSU ribosomal protein S12P methylthiotransferase	2.-,2.-.-.-	CDS	Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase			gs-sh	0	0	
biofilm formation family protein			Biofilm formation protein (YliH/bssR).		CDS	biofilm regulator BssR			0	0	gs-sh	
glutathione S-transferase, C-terminal domain protein			Glutathione S-transferase		CDS	Uncharacterized glutathione S-transferase-like protein			lit-s	0	0	
soluble aldose sugar dehydrogenase yliI	1.1.5.-	yliI	Glucose/sorbosone dehydrogenases		CDS	"Soluble aldose sugar dehydrogenase, PQQ-dependent"	1.1.5.-		gs-sh	0	0	
D-alanyl-D-alanine carboxypeptidase dacC	3.4.16.4	dacC	penicillin-binding protein 6. Serine peptidase. MEROPS family S11	3.4.16.4	CDS	D-alanyl-D-alanine carboxypeptidase	3.4.16.4		base_ec	base_ec	base_ec	
deoxyribose operon repressor		deoR	transcriptional regulator, DeoR family		CDS	"Deoxyribose operon repressor, DeoR family"			gs-sh	gs-sh	gs-sh	
putative undecaprenyl-diphosphatase ybjG			Undecaprenyl-diphosphatase (EC 3.6.1.27)	3.6.1.27	CDS	Putative permease			gs-sh	gs-sh	map	
multidrug transporter MdfA		mdfA	Arabinose efflux permease		CDS	Multidrug translocase MdfA			gs-sh	gs-sh	map	
conserved hypothetical protein			hypothetical protein		CDS	FIG00639076: hypothetical protein			lit-s	base_one HP	base_one HP	
phosphatase YbjI	3.1.3.-	ybjI	HAD-superfamily hydrolase, subfamily IIB		CDS	Protein ybjI			gs-sh	gs-sh	gs-sh	
inner membrane protein ybjJ		ybjJ	Major Facilitator Superfamily.		CDS	Putative transport protein/putative regulator			gs-sh	orth	map	
tetR-family transcriptional regulatory protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
aspT/YidE/YbjL antiporter duplication domain protein			Predicted permease		CDS	"TrkA, Potassium channel-family protein"			base_tigr	gs-sh	gs-sh	
inner membrane protein ybjM		ybjM	Putative inner membrane protein of Enterobacteriaceae.		CDS	Inner membrane protein			gs-sh	tf_idf	map	
glutaredoxin, GrxA family		grxA	Glutaredoxin, GrxA family		CDS	Glutaredoxin 1			base_tigr	gs-sh	map	
conserved hypothetical protein			Protein of unknown function (DUF1418).		CDS	hypothetical protein; Some similarities with putative membrane protein YbjC of Escherichia coli			base_one HP	base_one HP	0	
oxygen-insensitive NADPH nitroreductase	1.-.-.-	nfsA	Nitroreductase	1.-	CDS	Oxygen-insensitive NADPH nitroreductase	1.-.-.-		gs-sh	lit-s	orth	
alpha-L-glutamate ligases, RimK family protein			SSU ribosomal protein S6P modification protein		CDS	Ribosomal protein S6 glutaminyl transferase			base_tigr	0	0	
bacterial sensory transduction regulator family protein			Putative bacterial sensory transduction regulator.		CDS	putative sensory transduction regulator			lit-s	lit-s	lit-s	
putrescine-binding periplasmic protein		potF	Spermidine/putrescine-binding periplasmic protein		CDS	Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2)			gs-sh	0	0	
polyamine ABC transporter, ATP-binding family protein	3.6.3.31		spermidine/putrescine ABC transporter ATP-binding subunit		CDS	Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2)			base_tigr	0	0	
putrescine transport system permease protein PotH		potH	ABC-type spermidine/putrescine transport system, permease component I		CDS	Putrescine transport system permease protein PotH (TC 3.A.1.11.2)			gs-sh	lit-s	map	
binding--dependent transport system inner membrane component family protein			ABC-type spermidine/putrescine transport system, permease component II		CDS	Putrescine transport system permease protein PotI (TC 3.A.1.11.2)			0	0	0	
inner membrane protein ybjO		ybjO	Protein of unknown function (DUF2593).		CDS	Putative inner membrane protein			gs-sh	orth	0	
23S rRNA (uracil-5-)-methyltransferase RumB	2.1.1.189	rumB	23S rRNA m(5)U-747 methyltransferase (EC 2.1.1.189)	2.1.1.189	CDS	23S rRNA (Uracil-5-) -methyltransferase rumB	2.1.1.-		base_ec	lit-s	gs-sh	
ABC transporter arginine-binding protein 1		artJ	L-arginine-binding protein		CDS	"Arginine ABC transporter, periplasmic arginine-binding protein ArtJ"			gs-sh	0	0	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein			L-arginine ABC transporter membrane protein		CDS	"Arginine ABC transporter, permease protein ArtM"			base_tigr	map	gs-sh	
amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein			L-arginine ABC transporter membrane protein		CDS	"Arginine ABC transporter, permease protein ArtQ"			base_tigr	0	0	
lysine-arginine-ornithine-binding periplasmic family protein			L-arginine-binding protein		CDS	"Arginine ABC transporter, periplasmic arginine-binding protein ArtI"			base_tigr	map	gs-sh	
arginine transport ATP-binding protein ArtP	3.6.3.-	artP	L-arginine ABC transporter ATP-binding protein	3.6.3.-	CDS	"Arginine ABC transporter, ATP-binding protein ArtP"			gs-sh	tf_idf	map	
conserved hypothetical protein			hypothetical protein		CDS	probable lipoprotein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
NAD dependent epimerase/dehydratase family protein			Nucleoside-diphosphate-sugar epimerases		CDS	Putative nucleotide di-P-sugar epimerase or dehydratase			0	0	0	
N-acetylmuramoyl-L-alanine amidase AmiD	3.5.1.28	amiD	Negative regulator of beta-lactamase expression	3.5.1.28	CDS	N-acetylmuramoyl-L-alanine amidase	3.5.1.28		base_ec	base_ec	base_ec	
short chain dehydrogenase family protein			Predicted nucleoside-diphosphate-sugar epimerases		CDS	FIG00638862: hypothetical protein			0	0	0	
low specificity L-threonine aldolase	4.1.2.5	ltaE	L-threonine aldolase (EC 4.1.2.5)	4.1.2.5	CDS	Low-specificity L-threonine aldolase	4.1.2.5		base_ec	base_ec	base_ec	
pyruvate dehydrogenase [ubiquinone]	1.2.5.1	poxB	pyruvate dehydrogenase (quinone) (EC 1.2.5.1)	1.2.5.1	CDS	"Pyruvate oxidase [ubiquinone, cytochrome]"	1.2.2.2		base_ec	base_ec-d	base_ec-d	
NADH oxidoreductase hcr	1.-.-.-	hcr	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	1.-	CDS	NADH oxidoreductase hcr	1.-.-.-		gs-sh	base_lit-s	gs-sh	
hydroxylamine reductase	1.-.-.-	hcp	hydroxylamine reductase precursor	1.7.-,1.7.99.1	CDS	Hydroxylamine reductase	1.7.-.-		base_tigr	lit-s	tf_idf	
conserved hypothetical protein			Predicted membrane protein		CDS	FIG003145: Surface protein			base_one HP	base_one HP	0	
aquaporin Z		aqpZ	MIP family channel proteins		CDS	Aquaporin Z			gs-sh	lit-s	map	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Virulence factor VirK			base_one HP	base_one HP	0	
AAA domain protein			Predicted ATP-dependent endonuclease of the OLD family		CDS	"Predicted ATP-dependent endonuclease of the OLD family, YbjD subgroup"			0	0	0	
macrolide-specific efflux protein macA		macA	RND family efflux transporter, MFP subunit		CDS	Macrolide-specific efflux protein MacA			gs-sh	lit-s	orth	
macrolide export ATP-binding/permease protein MacB	3.6.3.-	macB	ABC-type antimicrobial peptide transport system, ATPase component	3.6.3.-	CDS	Macrolide export ATP-binding/permease protein MacB	3.6.3.-		gs-sh	lit-s	gs-sh	
cold shock domain protein CspD		cspD	cold-shock DNA-binding protein family		CDS	Cold shock protein CspD			base_tigr	lit-s	map	
ATP-dependent Clp protease adaptor ClpS family protein			Uncharacterized conserved protein		CDS	ATP-dependent Clp protease adaptor protein ClpS			0	lit-s	0	
ATP-dependent Clp protease ATP-binding subunit ClpA		clpA	ATP-dependent Clp protease ATP-binding subunit ClpA	3.4.21.92	CDS	ATP-dependent Clp protease ATP-binding subunit ClpA			base_lit-s	base_lit-s	base_lit-s	
translation initiation factor IF-1		infA	bacterial translation initiation factor 1 (bIF-1)		CDS	Translation initiation factor 1			base_tigr	gs-sh	map	
leucyl/phenylalanyl-tRNA--protein transferase	2.3.2.6	aat	leucyl/phenylalanyl-tRNA--protein transferase	2.3.2.6	CDS	Leucyl/phenylalanyl-tRNA--protein transferase	2.3.2.6		base_lit-s	base_ec	base_ec	
thiol reductant ABC exporter, CydC subunit		cydC	thiol reductant ABC exporter, CydC subunit		CDS	Transport ATP-binding protein CydC			base_lit-s	0	0	
thiol reductant ABC exporter, CydD subunit		cydD	thiol reductant ABC exporter, CydD subunit		CDS	Transport ATP-binding protein CydD			base_lit-s	0	0	
thioredoxin-disulfide reductase	1.8.1.9	trxB	thioredoxin-disulfide reductase	1.8.1.9	CDS	Thioredoxin reductase	1.8.1.9		base_lit-s	base_ec	base_ec	
leucine-responsive regulatory protein		lrp	transcriptional regulator, AsnC family		CDS	"Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system"			gs-sh	gs-sh	gs-sh	
DNA translocase ftsK		ftsK	DNA translocase FtsK		CDS	Cell division protein FtsK			lit-s	gs-sh	gs-sh	
outer membrane lipocarrier protein LolA		lolA	periplasmic chaperone LolA		CDS	Outer membrane lipoprotein carrier protein LolA			base_tigr	pfam-sh	pfam-sh	
replication-associated recombination protein A		rarA	Recombination protein MgsA		CDS	FIG065221: Holliday junction DNA helicase			gs-sh	0	0	
serine--tRNA ligase	6.1.1.11	serS	seryl-tRNA synthetase (EC 6.1.1.11)	6.1.1.11	CDS	Seryl-tRNA synthetase	6.1.1.11		base_tigr	base_ec	base_ec	
anaerobic dimethyl sulfoxide reductase chain A	1.8.99.-	dmsA	anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	1.8.5.3	CDS	Anaerobic dimethyl sulfoxide reductase chain A	1.8.99.-		gs-sh	lit-s	tf_idf	
dimethylsulfoxide reductase, chain B		dmsB	DMSO reductase, iron-sulfur subunit		CDS	Anaerobic dimethyl sulfoxide reductase chain B	1.8.99.-		base_tigr	gs-sh	map	
DMSO reductase anchor subunit family protein			DMSO reductase anchor subunit		CDS	Anaerobic dimethyl sulfoxide reductase chain C	1.8.99.-		lit-s	map	orth	
conserved hypothetical protein			Amidases related to nicotinamidase		CDS	Nicotinamidase family protein YcaC			base_one HP	base_one HP	0	
sugar (and other) transporter family protein			Arabinose efflux permease		CDS	Hypothetical MFS-type transporter protein YcaD			0	0	0	
inner membrane transporter ycaM		ycaM	amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	Probable transport protein			gs-sh	orth	map	
bacterial regulatory helix-turn-helix , lysR family protein			transcriptional regulator, LysR family		CDS	Putative LysR-like transcriptional regulator			gs-sh	gs-sh	gs-sh	
NADPH-dependent FMN reductase family protein			Putative NADPH-quinone reductase (modulator of drug activity B)		CDS	putative NAD(P)H dehydrogenase			0	0	0	
pyruvate formate-lyase 1-activating enzyme	1.97.1.4	pflA	pyruvate formate-lyase 1-activating enzyme	1.97.1.4	CDS	Pyruvate formate-lyase activating enzyme	1.97.1.4		base_lit-s	base_ec	base_ec	
formate acetyltransferase	2.3.1.54	pflB	formate acetyltransferase 1	2.3.1.54	CDS	Pyruvate formate-lyase	2.3.1.54		base_tigr	base_ec	base_ec	
formate transporter FocA		focA	formate transporter FocA		CDS	Formate efflux transporter (TC 2.A.44 family)			base_lit-s	tf_idf	tf_idf	
conserved hypothetical protein			uncharacterized domain		CDS	FIG00613574: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Predicted membrane protein		CDS	Putative inner membrane protein			base_one HP	base_one HP	0	
phosphoserine transaminase	2.6.1.52	serC	phosphoserine aminotransferase apoenzyme (EC 2.6.1.52)	2.6.1.52	CDS	Phosphoserine aminotransferase	2.6.1.52		base_tigr	base_ec	base_ec	
3-phosphoshikimate 1-carboxyvinyltransferase	2.5.1.19	aroA	3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)	2.5.1.19	CDS	5-Enolpyruvylshikimate-3-phosphate synthase	2.5.1.19		base_tigr	base_ec	base_ec	
peptidase M48 family protein			Zn-dependent protease with chaperone function	3.4.24.-	CDS	Putative metalloprotease yggG	3.4.24.-		0	0	gs-sh	
cytidylate kinase	2.7.4.14	cmk	cytidylate kinase (EC 2.7.4.14)	2.7.4.14	CDS	Cytidylate kinase	2.7.4.14		base_tigr	base_ec	base_ec	
ribosomal protein S1		rpsA	SSU ribosomal protein S1P		CDS	SSU ribosomal protein S1p			base_tigr	orth	lit-s	
integration host factor, beta subunit		ihfB	integration host factor, beta subunit		CDS	Integration host factor beta subunit			base_lit-s	lit-s	lit-s	
DNA internalization-related competence protein ComEC/Rec2			DNA internalization-related competence protein ComEC/Rec2		CDS	DNA internalization-related competence protein ComEC/Rec2			base_lit-s	base_lit-s	base_lit-s	
lipid A export permease/ATP-binding protein MsbA		msbA	lipid A export permease/ATP-binding protein MsbA	3.6.3.-	CDS	Lipid A export ATP-binding/permease protein MsbA	3.6.3.25		base_lit-s	gs-sh	tf_idf	
tetraacyldisaccharide 4'-kinase	2.7.1.130	lpxK	lipid-A-disaccharide kinase (EC 2.7.1.130)	2.7.1.130	CDS	Tetraacyldisaccharide 4'-kinase	2.7.1.130		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG004798: Putative cytoplasmic protein			base_one HP	base_one HP	0	
trm112p-like family protein			Uncharacterized conserved protein		CDS	FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster			0	0	0	
3-deoxy-D-manno-octulosonate cytidylyltransferase	2.7.7.38	kdsB	3-deoxy-D-manno-octulosonate cytidylyltransferase	2.7.7.38	CDS	3-deoxy-manno-octulosonate cytidylyltransferase	2.7.7.38		base_lit-s	base_ec	base_ec	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Membrane Protein Functionally coupled to the MukBEF Chromosome Partitioning Mechanism			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00637875: hypothetical protein			lit-s	base_one HP	base_one HP	
protein smtA		smtA	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase		CDS	S-adenosylmethionine-dependent methyltransferase Functionally Coupled to the MukBEF Chromosome Partitioning Mechanism			gs-sh	0	0	
chromosome partition protein mukF		mukF	bacterial condensin subunit MukF		CDS	Chromosome partition protein MukF			gs-sh	lit-s	map	
chromosome partition protein mukE		mukE	bacterial condensin subunit MukE		CDS	Chromosome partition protein MukE			gs-sh	lit-s	pfam-sh	
chromosome partition protein mukB		mukB	bacterial condensin subunit MukB		CDS	Chromosome partition protein MukB			gs-sh	lit-s	pfam-sh	
putative L,D-transpeptidase YcbB			Uncharacterized protein conserved in bacteria		CDS	"L,D-transpeptidase YcbB"			0	lit-s	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG001587: exported protein			base_one HP	base_one HP	0	
metallo-beta-lactamase superfamily protein			Zn-dependent hydrolases, including glyoxylases		CDS	"Hypothetical metal-binding enzyme, YcbL homolog"			0	0	0	
aspartate aminotransferase	2.6.1.1	aspC	Aspartate/tyrosine/aromatic aminotransferase	2.6.1.1	CDS	Aspartate aminotransferase	2.6.1.1		base_ec	base_ec	base_ec	
outer membrane protein F		ompF	Outer membrane protein (porin)		CDS	Outer membrane protein F precursor			gs-sh	tf_idf	tf_idf	
asparagine--tRNA ligase	6.1.1.22	asnS	asparaginyl-tRNA synthetase (EC 6.1.1.22)	6.1.1.22	CDS	Asparaginyl-tRNA synthetase	6.1.1.22		base_tigr	base_ec	base_ec	
nicotinate phosphoribosyltransferase	2.4.2.11	pncB	nicotinate phosphoribosyltransferase	2.4.2.11	CDS	Nicotinate phosphoribosyltransferase	2.4.2.11		base_lit-s	base_ec	base_ec	
aminopeptidase N	3.4.11.2	pepN	aminopeptidase N, Escherichia coli type	3.4.11.2	CDS	Membrane alanine aminopeptidase N	3.4.11.2		base_tigr	base_ec	base_ec	
aliphatic sulfonates import ATP-binding protein SsuB	3.6.3.-	ssuB	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component	3.6.3.-	CDS	"Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB"			gs-sh	0	0	
putative aliphatic sulfonates transport permease protein ssuC			ABC-type nitrate/sulfonate/bicarbonate transport system, permease component		CDS	Alkanesulfonates transport system permease protein			gs-sh	gs-sh	map	
alkanesulfonate monooxygenase, FMNH(2)-dependent	1.14.14.5	ssuD	alkanesulfonate monooxygenase (EC 1.14.14.5)	1.14.14.5	CDS	Alkanesulfonate monooxygenase	1.14.14.5		base_tigr	base_ec	base_ec	
putative aliphatic sulfonates-binding protein			ABC transporter, substrate-binding protein, aliphatic sulfonates family		CDS	Alkanesulfonates-binding protein			0	orth	0	
FMN reductase		ssuE	FMN reductase, SsuE family		CDS	FMN reductase	1.5.1.29		base_tigr	base_lit-s	tf_idf	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	type 1 fimbriae major subunit FimA			0	0	0	
chaperone protein focC		focC	P pilus assembly protein, chaperone PapD		CDS	Putative chaperone			gs-sh	0	0	
type VII secretion system (T7SS), usher family protein			P pilus assembly protein, porin PapC		CDS	type 1 fimbriae anchoring protein FimD			0	0	gs-sh	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	Fimbriae-like adhesin SfmH			0	0	0	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	type 1 fimbrae adaptor subunit FimF			0	0	0	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	type 1 fimbrae adaptor subunit FimF			0	0	0	
gram-negative pili assembly chaperone, C-terminal domain protein			P pilus assembly protein, chaperone PapD		CDS	Hypothetical fimbrial chaperone ycbF precursor			0	0	gs-sh	
dihydroorotate dehydrogenase	1.3.98.1	pyrD	dihydroorotate oxidase A	1.3.98.1,1.3.3.1	CDS	Dihydroorotate dehydrogenase	1.3.3.1		base_tigr	base_ec-d	base_ec-d	
conserved hypothetical protein			Uncharacterized Fe-S protein		CDS	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1			base_one HP	base_one HP	0	
conserved hypothetical protein			Protein of unknown function (DUF1379).		CDS	FIG01199806: hypothetical protein			base_one HP	base_one HP	lit-s	
ribosomal RNA large subunit methyltransferase L	2.1.1.173	rlmL	23S rRNA m(2)G-2445 methyltransferase	2.1.1.173,2.1.1.52	CDS	23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-)			base_ec-d	gs-sh	gs-sh	
heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	ATPase components of ABC transporters with duplicated ATPase domains		CDS	COG0488: ATPase components of ABC transporters with duplicated ATPase domains			gs-sh	map	lit-s	
integral membrane , PqiA family protein			integral membrane protein, PqiA family		CDS	Paraquat-inducible protein A			base_tigr	0	0	
mce related family protein			Paraquat-inducible protein B		CDS	Paraquat-inducible protein B			0	0	base_lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Paraquat-inducible protein B			base_one HP	base_one HP	0	
			Ribosome modulation factor		CDS				base_one miss	base_both miss	base_one miss	
beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA	4.2.1.60	fabA	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	4.2.1.60	CDS	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase	4.2.1.60		base_tigr	base_ec	base_ec	
AAA domain protein			Predicted ATP-dependent protease	3.4.21.-	CDS	ATP-dependent protease La Type II	3.4.21.53		0	0	tf_idf	
organiser of macrodomain of Terminus of chromosome family protein			Uncharacterized protein conserved in bacteria		CDS	FIG01201035: hypothetical protein			0	0	lit-s	
outer membrane protein A		ompA	Outer membrane protein and related peptidoglycan-associated (lipo)proteins		CDS	Outer membrane protein A precursor			gs-sh	orth	map	
cell division inhibitor sulA		sulA	SOS cell division inhibitor SulA		CDS	Cell division inhibitor			gs-sh	gs-sh	orth	
inner membrane protein yccS		yccS	hypothetical membrane protein, TIGR01666		CDS	Putative efflux (PET) family inner membrane protein YccS			gs-sh	0	0	
protein sxy		sxy	regulator of competence-specific genes		CDS	DNA transformation protein TfoX			gs-sh	orth	map	
inner membrane protein yccF		yccF	Predicted membrane protein		CDS	Inner membrane protein YccF			gs-sh	lit-s	orth	
helicase IV	3.6.4.12	helD	Superfamily I DNA and RNA helicases	3.6.4.12	CDS	DNA helicase IV			base_ec	gs-sh	map	
methylglyoxal synthase	4.2.3.3	mgsA	methylglyoxal synthase	4.2.3.3	CDS	Methylglyoxal synthase	4.2.3.3		base_lit-s	base_ec	base_ec	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	UPF0319 protein YccT precursor			base_one HP	base_one HP	0	
putative predicted protein						FIG00638691: hypothetical protein			base_one miss	lit-s	base_one miss	
conserved hypothetical protein			Predicted CoA-binding protein		CDS	"Succinyl-CoA synthetase, alpha subunit-related enzymes"			base_one HP	base_one HP	0	
hemimethylated DNA binding domain protein			hemimethylated DNA binding domain		CDS	hemimethylated DNA binding protein YccV			base_tigr	0	0	
ribosomal RNA large subunit methyltransferase I	2.1.1.191	rlmI	23S rRNA m(5)C-1962 methyltransferase (EC 2.1.1.191)	2.1.1.191	CDS	LSU m5C1962 methyltransferase RlmI			base_ec	0	0	
sulfur relay , TusE/DsrC/DsvC family protein		tusE	sulfur relay protein, TusE/DsrC/DsvC family	2.8.1.-	CDS	tRNA 2-thiouridine synthesizing protein E	2.8.1.-		base_tigr	gs-sh	gs-sh	
acylphosphatase	3.6.1.7	yccX	Acylphosphatases	3.6.1.7	CDS	"Acylphosphate phosphohydrolase, putative"	3.6.1.7		base_ec	base_ec	base_ec	
modulator of FtsH protease YccA		yccA	Integral membrane protein, interacts with FtsH		CDS	Putative TEGT family carrier/transport protein			gs-sh	0	0	
hydrogenase-1 small chain	1.12.99.6	hyaA	[NiFe]-hydrogenase I apoprotein, small subunit	1.12.99.6	CDS	Uptake hydrogenase small subunit precursor	1.12.99.6		base_ec	base_ec	base_ec	
hydrogenase-1 large chain	1.12.99.6	hyaB	[NiFe]-hydrogenase I apoprotein, large subunit	1.12.99.6	CDS	Uptake hydrogenase large subunit	1.12.99.6		base_ec	base_ec	base_ec	
ni/Fe-hydrogenase, b-type cytochrome subunit		cybH	[NiFe]-hydrogenase I apocytochrome b subunit		CDS	"Ni,Fe-hydrogenase I cytochrome b subunit"			base_tigr	0	0	
hydrogenase expression/formation protein	3.4.23.-	hybD	Hydrogenase 1 maturation peptidase HyaD. Aspartic peptidase. MEROPS family A31	3.4.24.-	CDS	Hydrogenase maturation protease	3.4.24.-		gs-sh	gs-sh	map	
hydrogenase-1 operon protein hyaE		hyaE	Tat proofreading chaperone HyaE		CDS	Hydrogenase maturation factor HoxO/HyaE			gs-sh	map	pfam-sh	
hupH hydrogenase expression , C-terminal conserved region family protein			HupH hydrogenase expression protein, C-terminal conserved region.		CDS	Hydrogenase maturation factor HoxQ			lit-s	0	0	
cytochrome bd-II oxidase subunit 1	1.10.3.-	appC	cytochrome bd-II ubiquinol oxidase subunit 1 apoprotein	1.10.3.-,1.10.3.11	CDS	Cytochrome d ubiquinol oxidase subunit I	1.10.3.-		gs-sh	0	0	
cytochrome d ubiquinol oxidase, subunit II	1.10.3.-	cydB	cytochrome bd-II ubiquinol oxidase subunit 2 apoprotein	1.10.3.-,1.10.3.11	CDS	Cytochrome d ubiquinol oxidase subunit II	1.10.3.-		base_tigr	lit-s	map	
periplasmic AppA protein	3.1.3.26	appA	Histidine phosphatase superfamily (branch 2).	3.1.3.26, 3.1.3.2	CDS	Phosphoanhydride phosphohydrolase (pH 2.5 acid phosphatase) (AP) / 4- phytase	3.1.3.2, 3.1.3.26		base_ec-d	base_ec-d	base_ec-d	
tyrosine-protein kinase etk	2.7.10.-	etk	capsular exopolysaccharide family		CDS	Tyrosine-protein kinase Wzc	2.7.10.2		gs-sh	0	0	
low molecular weight protein-tyrosine-phosphatase etp	3.1.3.48	etp	Protein-tyrosine-phosphatase	3.1.3.48	CDS	Low molecular weight protein-tyrosine-phosphatase Wzb	3.1.3.48		base_ec	base_ec	base_ec	
putative outer membrane lipoprotein Wza			Periplasmic protein involved in polysaccharide export		CDS	Putative polysaccharide export protein YccZ precursor			0	0	0	
conserved hypothetical protein			Bacterial putative lipoprotein (DUF940).		CDS	Putative outer membrane lipoprotein YmcA			base_one HP	base_one HP	0	
putative protein			Capsule biosynthesis GfcC.		CDS	YjbG polysaccharide synthesis-related protein			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2886).		CDS	Uncharacterized lipoprotein YmcC precursor			base_one HP	base_one HP	0	
hypothetical protein			hypothetical protein		CDS	hypothetical protein			base_lit-s	base_lit-s	base_lit-s	
			Transposase and inactivated derivatives		CDS				base_one miss	base_both miss	base_one miss	
putative transposase			Transposase and inactivated derivatives, IS1 family		CDS	Mobile element protein			0	0	0	
RNA chaperone, negative regulator of cspA transcription		cspE				Cold shock protein CspH			base_one miss	0	base_one miss	
cold shock-like protein CspG		cspG	cold-shock DNA-binding protein family		CDS	Cold shock protein CspG			gs-sh	0	0	
									base_both miss	base_both miss	base_both miss	
gnsA/GnsB family protein			GnsA/GnsB family.		CDS	GnsA protein			lit-s	gs-sh	map	
putative electron transport protein yccM			Polyferredoxin		CDS	Hypothetical iron-sulfur cluster binding protein YccM			gs-sh	0	0	
TMAO reductase sytem sensor TorS	2.7.13.3	torS	histidine kinase TorS	2.7.13.3	CDS	Sensor protein torS	2.7.3.-		base_tigr	gs-sh	gs-sh	
torCAD operon transcriptional regulatory protein torR		torR	response regulator TorR		CDS	TorCAD operon transcriptional regulatory protein TorR			gs-sh	lit-s	map	
TMAO reductase system periplasmic protein TorT		torT	TMAO-binding protein		CDS	Periplasmic protein torT precursor			base_tigr	gs-sh	gs-sh	
trimethylamine-N-oxide reductase c-type cytochrome TorC		torC	trimethylamine-N-oxide reductase c-type cytochrome TorC		CDS	Cytochrome c-type protein TorC			base_lit-s	gs-sh	gs-sh	
trimethylamine-N-oxide reductase TorA	1.7.2.3	torA	trimethylamine-N-oxide reductase TorA	1.7.2.3	CDS	Trimethylamine-N-oxide reductase	1.6.6.9		base_lit-s	base_ec-d	base_ec-d	
chaperone protein torD		torD	Tat proofreading chaperone TorD		CDS	Chaperone protein TorD			gs-sh	lit-s	map	
chaperone modulatory protein CbpM		cbpM	MerR HTH family regulatory protein.		CDS	Chaperone-modulator protein CbpM			gs-sh	orth	map	
curved DNA-binding protein		cbpA	DnaJ-class molecular chaperone with C-terminal Zn finger domain		CDS	DnaJ-class molecular chaperone CbpA			gs-sh	gs-sh	pfam-sh	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638642: hypothetical protein			lit-s	base_one HP	base_one HP	
glucose-1-phosphatase	3.1.3.10	agp	Histidine phosphatase superfamily (branch 2).	3.1.3.10	CDS	Glucose-1-phosphatase	3.1.3.10		base_ec	base_ec	base_ec	
yccJ-like family protein			YccJ-like protein.		CDS	FIG00895798: hypothetical protein			lit-s	0	0	
quinone oxidoreductase, type IV	1.6.5.2	wrbA	NAD(P)H:quinone oxidoreductase, type IV		CDS	Flavoprotein wrbA			base_tigr	gs-sh	gs-sh	
			Stress-induced bacterial acidophilic repeat motif.		CDS				base_one miss	base_both miss	base_one miss	
						conserved hypothetical protein			base_both miss	base_one HP	base_one HP	
pyrimidine utilization transport protein G		rutG	pyrimidine utilization transport protein G		CDS	Uracil permease			base_lit-s	0	0	
pyrimidine utilization flavin reductase protein F		rutF	pyrimidine utilization flavin reductase protein F	1.5.1.-	CDS	Predicted flavin reductase RutF in novel pyrimidine catabolism pathway			base_lit-s	0	0	
putative malonic semialdehyde reductase RutE			Nitroreductase	1.1.1.-	CDS	Predicted reductase RutE in novel pyrimidine catabolism pathway			0	0	0	
pyrimidine utilization protein D		rutD	pyrimidine utilization protein D	3.5.1.-	CDS	Possible hydrolase or acyltransferase RutD in novel pyrimidine catabolism pathway			base_lit-s	0	0	
pyrimidine utilization protein C		rutC	pyrimidine utilization protein C		CDS	Possible ring-opening amidohydrolase RutC in novel pyrimidine catabolism pathway			base_lit-s	0	0	
pyrimidine utilization protein B		rutB	pyrimidine utilization protein B		CDS	Predicted amidohydrolase RutB in novel pyrimidine catabolism pathway			base_lit-s	0	0	
pyrimidine utilization protein A		rutA	pyrimidine utilization protein A		CDS	Predicted monooxygenase RutA in novel pyrimidine catabolism pathway			base_lit-s	0	0	
pyrimidine utilization regulatory protein R		rutR	transcriptional regulator, TetR family		CDS	Transcriptional regulator RutR of pyrimidine catabolism (TetR family)			base_tigr	gs-sh	pfam-sh	
bifunctional protein putA	1.5.1.12	putA	L-proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase	1.5.1.12, 1.5.99.8,1.5.99.8, 1.5.1.12	CDS	Transcriptional repressor of PutA and PutP / Proline dehydrogenase (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase	1.5.99.8, 1.5.1.12		base_ec-d	base_ec-d	base_ec-d	
putative predicted protein						FIG00639374: hypothetical protein			base_one miss	lit-s	base_one miss	
sodium/proline symporter		putP	sodium/proline symporter		CDS	Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter			base_lit-s	gs-sh	gs-sh	
ferrous iron permease efeU		efeU	High-affinity Fe2+/Pb2+ permease		CDS	Ferrous iron transport permease EfeU			gs-sh	0	0	
conserved hypothetical protein			Predicted periplasmic lipoprotein involved in iron transport		CDS	"Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain"			base_one HP	base_one HP	0	
peroxidase ycdB	1.11.1.-	ycdB	Tat-translocated enzyme	1.11.1.19	CDS	Ferrous iron transport peroxidase EfeB			gs-sh	0	0	
protein phoH		phoH	Phosphate starvation-inducible protein PhoH, predicted ATPase		CDS	"Phosphate starvation-inducible protein PhoH, predicted ATPase"			gs-sh	gs-sh	lit-s	
poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD		pgaD	poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD		CDS	Biofilm PGA synthesis auxiliary protein PgaD			base_lit-s	pfam-sh	pfam-sh	
poly-beta-1,6 N-acetyl-D-glucosamine synthase	2.4.1.-	pgaC	poly-beta-1,6 N-acetyl-D-glucosamine synthase	2.4.-	CDS	Biofilm PGA synthesis N-glycosyltransferase PgaC	2.4.-.-		base_lit-s	gs-sh	map	
poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	3.5.1.-	pgaB	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	3.-	CDS	Biofilm PGA synthesis deacetylase PgaB (EC 3.-)			base_lit-s	0	0	
poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA		pgaA	poly acetylglucosamine porin (TC 1.B.55)		CDS	Biofilm PGA outer membrane secretin PgaA			base_tigr	0	0	
putative diguanylate cyclase YcdT			diguanylate cyclase (GGDEF) domain		CDS	Sensory box/GGDEF domain protein			tf_idf	map	pfam-sh	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
transposase family protein			Transposase.		CDS	Mobile element protein			lit-s	0	0	
putative (Acyl-carrier-protein) S-malonyltransferase			hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
photosystem II complex subunit Ycf12 family protein			hypothetical protein		CDS	Uncharacterized protein YcdU			base_one HP	0	base_one HP	
NAD binding domain of 6-phosphogluconate dehydrogenase family protein			Phosphoglycerate dehydrogenase and related dehydrogenases	1.1.1.81, 1.1.1.79	CDS	Putative 2-hydroxyacid dehydrogenase YcdW	1.-.-.-		0	0	0	
putative hydrolase ycdX			Histidinol phosphatase and related hydrolases of the PHP family		CDS	Putative hydrolase YcdX	3.1.-.-		gs-sh	lit-s	map	
nitrate reductase delta subunit			Uncharacterized component of anaerobic dehydrogenases		CDS	"Uncharacterized protein YcdY, TorD family"			0	0	0	
inner membrane protein ycdZ		ycdZ	Protein of unknown function (DUF1097).		CDS	Inner membrane protein YcdZ			gs-sh	lit-s	0	
curli production assembly/transport component CsgG family protein			Uncharacterized protein involved in formation of curli polymers		CDS	Curli production assembly/transport component CsgG			0	lit-s	0	
type VIII secretion system (T8SS), CsgF family protein			Type VIII secretion system (T8SS), CsgF protein.		CDS	Curli production assembly/transport component CsgF			lit-s	pfam-sh	pfam-sh	
curli assembly CsgE family protein			Curli assembly protein CsgE.		CDS	Curli production assembly/transport component CsgE			lit-s	pfam-sh	map	
csgBAC operon transcriptional regulatory protein		csgD	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	Transcriptional regulator CsgD for 2nd curli operon			gs-sh	gs-sh	gs-sh	
putative conserved predicted protein						FIG00637955: hypothetical protein			base_one miss	lit-s	base_one miss	
minor curlin subunit		csgB	Curlin associated repeat.		CDS	"Minor curlin subunit CsgB, nucleation component of curlin monomers"			gs-sh	tf_idf	map	
major curlin subunit		csgA	Curlin associated repeat.		CDS	Major curlin subunit precursor CsgA			gs-sh	tf_idf	map	
curli assembly protein CsgC		csgC	Thin aggregative fimbriae synthesis protein.		CDS	Putative curli production protein CsgC			gs-sh	orth	map	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638598: hypothetical protein			lit-s	base_one HP	base_one HP	
regulator of RNase III activity		ymdB	Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1		CDS	"COG2110, Macro domain, possibly ADP-ribose binding module"			gs-sh	0	0	
phospholipase D family protein			Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes		CDS	Cardiolipin synthetase	2.7.8.-		0	orth	0	
acyltransferase family protein			Predicted acyltransferases	2.1.-	CDS	Glucans biosynthesis protein C	2.1.-.-		0	0	0	
glucans biosynthesis protein G		mdoG	Periplasmic glucans biosynthesis protein		CDS	Glucans biosynthesis protein G precursor			gs-sh	orth	orth	
glucans biosynthesis glucosyltransferase H	2.4.1.-	mdoH	Membrane glycosyltransferase	2.4.1.-	CDS	Glucans biosynthesis glucosyltransferase H	2.4.1.-		gs-sh	lit-s	orth	
conserved hypothetical protein			Predicted periplasmic lipoprotein		CDS	Putative outer membrane lipoprotein			base_one HP	base_one HP	0	
msyB family protein			MsyB protein.		CDS	Acidic protein msyB			lit-s	gs-sh	gs-sh	
sugar (and other) transporter family protein			Arabinose efflux permease		CDS	"Multidrug-efflux transporter, major facilitator superfamily (MFS) (TC 2.A.1)"			0	0	0	
lipid A biosynthesis lauroyl acyltransferase	2.3.1.-	htrB	lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase	2.3.1.-	CDS	Lipid A biosynthesis lauroyl acyltransferase	2.3.1.-		gs-sh	lit-s	tf_idf	
rhodanese-like domain protein			Predicted sulfurtransferase		CDS	Rhodanese-related sulfurtransferases			0	0	0	
yceI-like domain protein			Uncharacterized conserved protein		CDS	Protein yceI precursor			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Cytochrome B561		CDS	Cytochrome B561			base_one HP	base_one HP	base_lit-s	
N-methyl-L-tryptophan oxidase	1.5.3.-	solA	Glycine/D-amino acid oxidases (deaminating)	1.5.3.-	CDS	N-methyl-L-amino-acid oxidase; N-methyl-L-tryptophan oxidase	1.5.3.2, 1.5.3.-		gs-sh	0	0	
bssS family protein			BssS protein family.		CDS	Putative cytoplasmic protein			lit-s	0	0	
DNA-damage-inducible protein I		dinI	DinI-like family.		CDS	DNA-damage-inducible protein I			gs-sh	base_lit-s	map	
dihydroorotase, homodimeric type	3.5.2.3	pyrC	dihydroorotase (EC 3.5.2.3)	3.5.2.3	CDS	Dihydroorotase	3.5.2.3		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF1439).		CDS	Putative lipoprotein yceB precursor			base_one HP	base_one HP	gs-sh	
glutaredoxin, GrxB family		grxB	Glutaredoxin, GrxB family		CDS	Glutaredoxin 2			base_tigr	gs-sh	orth	
major Facilitator Superfamily protein			Arabinose efflux permease		CDS	MFS superfamily export protein YceL			0	0	0	
ribosomal-protein-alanine acetyltransferase	2.3.1.128	rimJ	[SSU ribosomal protein S5P]-alanine acetyltransferase (EC 2.3.1.128)	2.3.1.128	CDS	Ribosomal-protein-S5p-alanine acetyltransferase			base_ec	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Protein of unknown function YceH			base_one HP	base_one HP	0	
conserved hypothetical protein			Predicted dehydrogenases and related proteins		CDS	Virulence factor MviM			base_one HP	base_one HP	gs-sh	
integral membrane protein MviN		mviN	integral membrane protein MviN		CDS	Proposed peptidoglycan lipid II flippase MurJ			base_lit-s	0	0	
flgN family protein			Flagellar biosynthesis/type III secretory pathway chaperone		CDS	Flagellar biosynthesis protein FlgN			gs-sh	gs-sh	gs-sh	
flagellar biosynthesis anti-sigma factor FlgM		flgM	anti-sigma-28 factor, FlgM family		CDS	Negative regulator of flagellin synthesis FlgM			base_tigr	pfam-sh	pfam-sh	
flagella basal body P-ring formation protein FlgA		flgA	flagella basal body P-ring formation protein FlgA		CDS	Flagellar basal-body P-ring formation protein FlgA			base_lit-s	0	0	
flagellar basal-body rod protein FlgB		flgB	flagellar basal-body rod protein FlgB		CDS	Flagellar basal-body rod protein FlgB			base_lit-s	lit-s	lit-s	
flagellar basal-body rod protein FlgC		flgC	flagellar basal-body rod protein FlgC		CDS	Flagellar basal-body rod protein FlgC			base_lit-s	lit-s	lit-s	
basal-body rod modification protein flgD		flgD	Flagellar hook capping protein		CDS	Flagellar basal-body rod modification protein FlgD			gs-sh	gs-sh	gs-sh	
flagellar hook protein flgE		flgE	fagellar hook-basal body proteins		CDS	Flagellar hook protein FlgE			gs-sh	lit-s	gs-sh	
flagellar basal-body rod protein flgF		flgF	fagellar hook-basal body proteins		CDS	Flagellar basal-body rod protein FlgF			gs-sh	lit-s	map	
flagellar basal-body rod protein FlgG		flgG	flagellar basal-body rod protein FlgG, Gram-negative bacteria		CDS	Flagellar basal-body rod protein FlgG			gs-sh	lit-s	gs-sh	
flagellar L-ring family protein			Flagellar basal body L-ring protein		CDS	Flagellar L-ring protein FlgH			tf_idf	tf_idf	tf_idf	
flagellar P-ring family protein			Flagellar basal-body P-ring protein		CDS	Flagellar P-ring protein FlgI			tf_idf	tf_idf	tf_idf	
flagellar rod assembly protein/muramidase FlgJ		flgJ	flagellar rod assembly protein/muramidase FlgJ		CDS	Flagellar protein FlgJ [peptidoglycan hydrolase]	3.2.1.-		base_lit-s	gs-sh	gs-sh	
flagellar hook-associated protein FlgK		flgK	flagellar hook-associated protein FlgK		CDS	Flagellar hook-associated protein FlgK			base_lit-s	lit-s	lit-s	
flagellar hook-associated protein 3		flgL	flagellar hook-associated protein 3		CDS	Flagellar hook-associated protein FlgL			base_lit-s	gs-sh	gs-sh	
ribonuclease E	3.1.26.12	rne	RNAse E (EC 3.1.26.12)	3.1.26.12	CDS	Ribonuclease E	3.1.26.12		base_ec	base_ec	base_ec	
									base_both miss	base_both miss	base_both miss	
pseudouridine synthase, RluA family protein	5.4.99.-		ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24)	5.4.99.24	CDS	Ribosomal large subunit pseudouridine synthase C	4.2.1.70		base_tigr	tf_idf	base_ec-d	
septum formation protein Maf		maf	MAF protein		CDS	FIG146278: Maf/YceF/YhdE family protein			base_tigr	0	0	
									base_both miss	base_both miss	base_both miss	
conserved hypothetical protein			Predicted metal-binding, possibly nucleic acid-binding protein		CDS	"COG1399 protein, clustered with ribosomal protein L32p"			base_one HP	base_one HP	0	
ribosomal protein L32		rpmF	LSU ribosomal protein L32P		CDS	LSU ribosomal protein L32p			base_tigr	map	lit-s	
fatty acid/phospholipid synthesis protein PlsX		plsX	phosphate:acyl-[acyl carrier protein] acyltransferase	2.3.1.15	CDS	Phosphate:acyl-ACP acyltransferase PlsX			base_tigr	gs-sh	gs-sh	
3-oxoacyl-[acyl-carrier-protein] synthase 3	2.3.1.180	fabH	3-oxoacyl-[acyl-carrier-protein] synthase III	2.3.1.180,2.3.1.41	CDS	"3-oxoacyl-[acyl-carrier-protein] synthase, KASIII"	2.3.1.41		base_ec-d	base_ec-d	base_ec-d	
malonyl CoA-acyl carrier protein transacylase	2.3.1.39	fabD	[Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39)	2.3.1.39	CDS	Malonyl CoA-acyl carrier protein transacylase	2.3.1.39		base_tigr	base_ec	base_ec	
3-oxoacyl-[acyl-carrier-protein] reductase	1.1.1.100	fabG	3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100)	1.1.1.100	CDS	3-oxoacyl-[acyl-carrier protein] reductase	1.1.1.100		base_tigr	base_ec	base_ec	
acyl carrier protein		acpP	acyl carrier protein		CDS	Acyl carrier protein			base_lit-s	lit-s	lit-s	
beta-ketoacyl-acyl-carrier-protein synthase II	2.3.1.179	fabF	3-oxoacyl-[acyl-carrier-protein] synthase II	2.3.1.179,2.3.1.41	CDS	"3-oxoacyl-[acyl-carrier-protein] synthase, KASII"	2.3.1.41		base_tigr	base_ec-d	base_ec-d	
aminodeoxychorismate lyase	4.1.3.38	pabC	aminodeoxychorismate lyase apoprotein  (EC 4.1.3.38)	4.1.3.38	CDS	Aminodeoxychorismate lyase	4.1.3.38		base_tigr	base_ec	base_ec	
yceG-like family protein			conserved hypothetical protein, YceG family		CDS	FIG004453: protein YceG like			gs-sh	gs-sh	pfam-sh	
thymidylate kinase	2.7.4.9	tmk	thymidylate kinase (EC 2.7.4.9)	2.7.4.9	CDS	Thymidylate kinase	2.7.4.9		base_tigr	base_ec	base_ec	
DNA polymerase III subunit delta'	2.7.7.7	holB	DNA polymerase III, delta prime subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III delta prime subunit	2.7.7.7		base_ec	base_ec	base_ec	
conserved hypothetical protein			hydrolase, TatD family	3.1.21.-	CDS	Putative deoxyribonuclease YcfH			base_one HP	base_one HP	0	
PTS system glucose-specific EIICB component	2.7.1.69	ptsG	PTS system D-glucose-specific IIB component, Glc family (TC 4.A.1.1.1)/PTS system D-glucose-specific IIC component, Glc family (TC 4.A.1.1.1)		CDS	"PTS system, glucose-specific IIB component / PTS system, glucose-specific IIC component"	2.7.1.69, 2.7.1.69		gs-sh	base_ec-d	0	
fhuE receptor		fhuE	TonB-dependent siderophore receptor		CDS	Putative OMR family iron-siderophore receptor precursor			gs-sh	0	0	
conserved hypothetical protein						FIG00639251: hypothetical protein			base_one HP	base_one HP	base_one miss	
HIT domain protein			Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases		CDS	YcfF/hinT protein: a purine nucleoside phosphoramidase			pfam-sh	map	gs-sh	
conserved hypothetical protein			Predicted periplasmic lipoprotein		CDS	YcfL protein: an outer membrane lipoprotein that is part of a salvage cluster			base_one HP	base_one HP	0	
conserved hypothetical protein			uncharacterized proteobacterial lipoprotein		CDS	"Lipoprotein YcfM, part of a salvage pathway of unknown substrate"			base_one HP	base_one HP	0	
thiamine kinase	2.7.1.89	thiK	thiamine kinase	2.7.1.89	CDS	Thiamine kinase @ Adenosylcobinamide kinase	2.7.1.89, 2.7.1.156		base_lit-s	base_ec-d	base_ec-d	
glycosyl hydrolase family 3 N terminal domain protein			beta-N-acetylhexosaminidase (EC:3.2.1.52)	3.2.1.52	CDS	Beta N-acetyl-glucosaminidase	3.2.1.52		0	0	base_ec	
conserved hypothetical protein			Predicted esterase		CDS	YcfP protein: probably an esterase that is part of a salvage cluster			base_one HP	base_one HP	0	
NADH dehydrogenase	1.6.99.3	ndh	NADH dehydrogenase, FAD-containing subunit	1.6.99.3	CDS	NADH dehydrogenase	1.6.99.3		base_ec	base_lit-s	base_ec	
glycine-zipper containing OmpA-like membrane domain protein			Predicted outer membrane lipoprotein		CDS	Putative exported protein			0	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
multiple stress resistance protein BhsA		bhsA	Protein of unknown function (DUF1471).		CDS	Putative outer membrane protein			gs-sh	orth	0	
putative L,D-transpeptidase YcfS			Uncharacterized protein conserved in bacteria		CDS	"L,D-transpeptidase YcfS"			0	lit-s	0	
transcription-repair coupling factor	3.6.1.-	mfd	transcription-repair coupling factor (mfd)	3.6.4.-	CDS	Transcription-repair coupling factor			base_tigr	lit-s	gs-sh	
inner membrane protein YcfT		ycfT	Predicted membrane protein		CDS	FIG00638640: hypothetical protein			gs-sh	0	0	
lipo-releasing system transmembrane protein lolC		lolC	lipoprotein releasing system, transmembrane protein, LolC/E family		CDS	Lipoprotein releasing system transmembrane protein LolC			gs-sh	0	0	
liporeleasing system, ATP-binding protein	3.6.3.-	lolD	lipoprotein releasing system, ATP-binding protein	3.6.3.-	CDS	Lipoprotein releasing system ATP-binding protein LolD			base_tigr	gs-sh	gs-sh	
liporeleasing system, transmembrane protein LolE		lolE	lipoprotein releasing system, transmembrane protein LolE		CDS	Lipoprotein releasing system transmembrane protein LolE			gs-sh	gs-sh	lit-s	
glucokinase family protein			N-acetylglucosamine kinase (EC 2.7.1.59)	2.7.1.59	CDS	Latent glucokinase ycfX			0	0	gs-sh	
sir2 family protein			NAD-dependent protein deacetylases, SIR2 family	3.5.1.-	CDS	NAD-dependent protein deacetylase of SIR2 family			0	0	pfam-sh	
inner membrane protein ycfZ		ycfZ	Beta-propeller domains of methanol dehydrogenase type		CDS	putative factor			gs-sh	0	0	
inner membrane protein ymfA		ymfA	Protein of unknown function (DUF3592).		CDS	FIG00639097: hypothetical protein			gs-sh	0	lit-s	
bacterial extracellular solute-binding family protein			Spermidine/putrescine-binding periplasmic protein		CDS	"ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)"			0	0	0	
binding--dependent transport system inner membrane component family protein			ABC-type spermidine/putrescine transport system, permease component II		CDS	Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)			0	0	gs-sh	
binding--dependent transport system inner membrane component family protein			ABC-type spermidine/putrescine transport system, permease component I		CDS	Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1)			0	0	0	
polyamine ABC transporter, ATP-binding family protein	3.6.3.31		spermidine/putrescine ABC transporter ATP-binding subunit	3.6.3.31	CDS	Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)			base_tigr	0	0	
putative predicted protein						FIG00639905: hypothetical protein			base_one miss	lit-s	base_one miss	
peptidase T	3.4.11.-	pepT	peptidase T. Metallo peptidase. MEROPS family M20B	3.4.11.4	CDS	Tripeptide aminopeptidase	3.4.11.4		base_tigr	gs-sh	base_ec	
cupin superfamily protein			Uncharacterized conserved protein		CDS	FIG002776: hypothetical protein			0	0	lit-s	
sensor protein PhoQ	2.7.13.3	phoQ	Signal transduction histidine kinase	2.7.13.3	CDS	Sensor protein PhoQ	2.7.13.3		base_ec	base_ec	base_ec	
transcriptional regulatory protein phoP		phoP	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	Transcriptional regulatory protein PhoP			gs-sh	lit-s	map	
adenylosuccinate lyase	4.3.2.2	purB	Adenylosuccinate lyase (EC 4.3.2.2)	4.3.2.2	CDS	Adenylosuccinate lyase	4.3.2.2		base_tigr	base_ec	base_ec	
high frequency lysogenization protein hflD		hflD	Uncharacterized protein involved in purine metabolism		CDS	FIG002903: a protein of unknown function perhaps involved in purine metabolism			gs-sh	0	0	
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	2.1.1.61	trmU	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	2.8.1.-,2.1.1.61	CDS	tRNA-specific 2-thiouridylase MnmA			base_lit-s	gs-sh	gs-sh	
phosphatase nudJ	3.6.1.-	nudJ	ADP-ribose pyrophosphatase	3.6.1.-	CDS	Nudix-like NDP and NTP phosphohydrolase YmfB			gs-sh	0	0	
pseudouridine synthase family protein	5.4.99.-		ribosomal large subunit pseudouridine synthase E	5.4.99.20,5.4.99.-	CDS	Ribosomal large subunit pseudouridine synthase E	4.2.1.70		base_tigr	tf_idf	lit-s	
isocitrate dehydrogenase, NADP-dependent	1.1.1.42	icd	isocitrate dehydrogenase (NADP) (EC 1.1.1.42)	1.1.1.42	CDS	Isocitrate dehydrogenase [NADP]	1.1.1.42		base_tigr	base_ec	base_ec	
			Methyltransferase domain.		CDS				base_one miss	base_both miss	base_one miss	
e14 prophage; predicted inner membrane domain protein		ymfE	hypothetical protein		CDS	predicted inner membrane protein			base_one HP	0	base_one HP	
peptidase U49 family protein			Peptidase U49.		CDS	"cell death peptidase, inhibitor of T4 late gene expression"			lit-s	0	0	
phage integrase family protein			Bacteriophage lambda integrase, N-terminal domain./Phage integrase family.		CDS	Prophage lambda integrase			0	orth	0	
			Excisionase-like protein.		CDS				base_one miss	base_both miss	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
			hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
peptidase S24-like family protein			phage repressor protein. Serine peptidase. MEROPS family S24		CDS	repressor			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
putative predicted DNA-binding transcriptional regulator			hypothetical protein		CDS	FIG00639586: hypothetical protein			base_one HP	0	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
						FIG00643873: hypothetical protein			base_both miss	base_one miss	base_one miss	
phage Terminase family protein			transcriptional regulator, GntR family		CDS	"COG4626: Phage terminase-like protein, large subunit"			0	0	0	
putative membrane protein			hypothetical protein		CDS	FIG00640168: hypothetical protein			base_one HP	0	base_one HP	
phage portal family protein			Phage-related protein		CDS	Phage portal protein			0	lit-s	0	
baseplate J-like family protein			Uncharacterized homolog of phage Mu protein gp47		CDS	Phage FluMu protein gp47			0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG121501: Prophage tail protein			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	Prophage tail fiber protein			lit-s	base_one HP	base_one HP	
caudovirales tail fibre assembly family protein			Caudovirales tail fibre assembly protein.		CDS	Phage tail fiber assembly protein			lit-s	0	0	
caudovirales tail fibre assembly family protein			Caudovirales tail fibre assembly protein.		CDS	Phage tail fiber assembly protein			lit-s	0	0	
phage Tail Collar domain protein			Phage Tail Collar Domain.		CDS	Prophage tail fiber protein			lit-s	0	0	
resolvase, N terminal domain protein			Site-specific recombinases, DNA invertase Pin homologs		CDS	Phage DNA invertase			0	0	0	
HNH endonuclease family protein			Predicted restriction endonuclease	3.1.21.-	CDS	HNH nuclease			0	pfam-sh	0	
isocitrate/isopropylmalate dehydrogenase family protein			Isocitrate dehydrogenases		CDS	Isocitrate dehydrogenase [NADP]	1.1.1.42		0	0	0	
conserved hypothetical protein			Phage envelope protein		CDS	FIG00638962: hypothetical protein			base_one HP	base_one HP	0	
HTH-type transcriptional repressor YcgE		ycgE	Predicted transcriptional regulators		CDS	Putative HTH-type transcriptional regulator ycgE			gs-sh	gs-sh	gs-sh	
blue light- and temperature-regulated antirepressor YcgF		ycgF	FOG: EAL domain		CDS	Hypothetical protein ycgF			gs-sh	gs-sh	gs-sh	
			Biofilm development protein YmgB/AriR.		CDS				base_one miss	base_both miss	base_one miss	
putative two-component-system connector protein AriR			Biofilm development protein YmgB/AriR.		CDS				0	base_one miss	base_one miss	
putative protein involved in biofilm formation			hypothetical protein		CDS	FIG00638803: hypothetical protein			base_one HP	0	base_one HP	
EAL domain protein			FOG: EAL domain		CDS	FIG00638205: hypothetical protein			lit-s	0	0	
putative membrane protein			hypothetical protein		CDS	FIG00638313: hypothetical protein			base_one HP	0	base_one HP	
outer membrane autotransporter barrel domain protein			outer membrane autotransporter barrel domain		CDS	AidA-I adhesin-like protein			base_tigr	orth	map	
outer membrane autotransporter barrel domain protein			outer membrane autotransporter barrel domain		CDS	AidA-I adhesin-like protein			base_tigr	orth	map	
conserved hypothetical protein			hypothetical protein		CDS	FIG00637894: hypothetical protein			lit-s	base_one HP	base_one HP	
glycine zipper family protein			Glycine zipper.		CDS	FIG00639301: hypothetical protein			lit-s	0	0	
outer membrane autotransporter barrel domain protein						Pertactin precursor			base_one miss	0	base_one miss	
cell division topological specificity factor MinE		minE	cell division topological specificity factor MinE		CDS	Cell division topological specificity factor MinE			base_lit-s	lit-s	lit-s	
septum site-determining protein MinD		minD	septum site-determining protein MinD		CDS	Septum site-determining protein MinD			base_lit-s	lit-s	lit-s	
septum site-determining protein MinC		minC	septum site-determining protein MinC		CDS	Septum site-determining protein MinC			base_lit-s	lit-s	lit-s	
fels-1 Prophage Protein-like family protein			Fels-1 Prophage Protein-like.		CDS	"orf, hypothetical protein"			lit-s	0	0	
conserved hypothetical protein			Bacterial pre-peptidase C-terminal domain.		CDS	FIG01045439: hypothetical protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Protein YcgL			base_one HP	base_one HP	0	
fumarylacetoacetate (FAA) hydrolase family protein			2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)		CDS	FIG094199: Fumarylacetoacetate hydrolase			0	0	0	
flagellin N-methylase family protein			Uncharacterized conserved protein		CDS	YcgN (Fragment)			0	0	0	
hemolysin E, chromosomal		hlyE	Haemolysin E (HlyE).		CDS	"Hemolysin E, chromosomal"			gs-sh	lit-s	map	
protein umuD	3.4.21.-	umuD	SOS response UmuD protein. Serine peptidase. MEROPS family S24	3.4.21.-	CDS	Error-prone repair protein UmuD			gs-sh	0	0	
impB/mucB/samB family protein			Nucleotidyltransferase/DNA polymerase involved in DNA repair		CDS	"Error-prone, lesion bypass DNA polymerase V (UmuC)"			gs-sh	0	0	
disulfide bond formation DsbB family protein			Thiol:disulfide interchange protein DsbB		CDS	"Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation"			pfam-sh	pfam-sh	pfam-sh	
na+/H+ antiporter NhaB		nhaB	sodium/proton antiporter, NhaB family (TC 2.A.34.1.1)		CDS	Na+/H+ antiporter NhaB			base_tigr	lit-s	pfam-sh	
fatty acid metabolism transcriptional regulator FadR		fadR	transcriptional regulator, GntR family		CDS	"Transcriptional regulator for fatty acid degradation FadR, GntR family"			base_tigr	gs-sh	gs-sh	
spoVR like family protein			Uncharacterized conserved protein		CDS	Stage V sporulation protein involved in spore cortex synthesis (SpoVR)			0	0	0	
flavin containing amine oxidoreductase family protein			D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	1.4.99.1	CDS	D-amino acid dehydrogenase small subunit	1.4.99.1		0	0	base_ec	
alanine racemase	5.1.1.1	alr	alanine racemase (EC 5.1.1.1)	5.1.1.1	CDS	"alanine racemase 2, catabolic"			base_tigr	tf_idf	tf_idf	
transporter associated domain protein			potassium/proton antiporter, CPA1 family (TC 2.A.36)		CDS	Cell volume regulation protein A			0	0	0	
murein tetrapeptide carboxypeptidase	3.4.17.13	ldcA	murein tetrapeptidase LD-carboxypeptidase (EC:3.4.17.13). Serine peptidase. MEROPS family S66	3.4.17.13	CDS	Muramoyltetrapeptide carboxypeptidase	3.4.17.13		base_ec	base_ec	base_ec	
transglycosylase SLT domain protein			Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	3.2.1.-	CDS	Membrane-bound lytic murein transglycosylase E	3.2.1.-		0	0	0	
flagellar brake protein YcgR		ycgR	Predicted glycosyltransferase		CDS	Inner membrane protein			gs-sh	0	0	
transglycosylase associated family protein			Predicted membrane protein		CDS	UPF0410 protein YmgE			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00637958: hypothetical protein			lit-s	base_one HP	base_one HP	
periplasmic trehalase	3.2.1.28	treA	Neutral trehalase	3.2.1.28	CDS	COG1626: Neutral trehalase( EC:3.2.1.28 )			base_ec	0	0	
PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit dhaM	2.7.1.-	dhaM	Phosphotransferase System HPr (HPr) Family		CDS	"Phosphoenolpyruvate-dihydroxyacetone phosphotransferase, subunit DhaM; DHA-specific IIA component / DHA-specific phosphocarrier protein HPr / DHA-specific EI component"	2.7.1.121		gs-sh	0	0	
dihydroxyacetone kinase, L subunit	2.7.-.-	dhaL	dihydroxyacetone kinase DhaL subunit	2.7.1.-,2.7.1.121	CDS	"Phosphoenolpyruvate-dihydroxyacetone phosphotransferase, ADP-binding subunit DhaL"	2.7.1.121		base_tigr	0	0	
dihydroxyacetone kinase, DhaK subunit	2.7.1.-	dhaK	dihydroxyacetone kinase DhaK subunit	2.7.1.-,2.7.1.121	CDS	"Phosphoenolpyruvate-dihydroxyacetone phosphotransferase, dihydroxyacetone binding subunit DhaK"	2.7.1.121		base_tigr	0	0	
bacterial regulatory , Fis family protein			Transcriptional activator of acetoin/glycerol metabolism		CDS	Phosphoenolpyruvate-dihydroxyacetone phosphotransferase operon regulatory protein DhaR			0	0	0	
outer membrane autotransporter barrel domain protein			outer membrane autotransporter barrel domain		CDS	Putative adhesion and penetration protein			base_tigr	orth	orth	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638199: hypothetical protein			lit-s	base_one HP	base_one HP	
GTP-dependent nucleic acid-binding protein engD		engD	GTP-binding protein YchF		CDS	GTP-binding and nucleic acid-binding protein YchF			gs-sh	gs-sh	gs-sh	
peptidyl-tRNA hydrolase	3.1.1.29	pth	peptidyl-tRNA hydrolase (EC 3.1.1.29)	3.1.1.29	CDS	Peptidyl-tRNA hydrolase	3.1.1.29		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF2583).		CDS	Putative membrane protein YchH			base_one HP	base_one HP	0	
putative sulfate transporter ychM			high affinity sulphate transporter 1		CDS	Putative sulfate permease			gs-sh	gs-sh	map	
ribose-phosphate pyrophosphokinase	2.7.6.1	prs	ribose-phosphate pyrophosphokinase	2.7.6.1	CDS	Ribose-phosphate pyrophosphokinase	2.7.6.1		base_lit-s	base_ec	base_ec	
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	2.7.1.148	ispE	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	2.7.1.148	CDS	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	2.7.1.148		base_tigr	base_ec	base_ec	
outer membrane lipoprotein LolB		lolB	outer membrane lipoprotein LolB		CDS	Outer membrane lipoprotein LolB			base_lit-s	lit-s	lit-s	
glutamyl-tRNA reductase	1.2.1.70	hemA	glutamyl-tRNA reductase (EC 1.2.1.70)	1.2.1.70	CDS	Glutamyl-tRNA reductase	1.2.1.70		base_tigr	base_ec	base_ec	
peptide chain release factor 1		prfA	bacterial peptide chain release factor 1 (bRF-1)		CDS	Peptide chain release factor 1			base_tigr	lit-s	tf_idf	
protein-(glutamine-N5) methyltransferase, release factor-specific	2.1.1.-	prmC	[protein release factor]-glutamine N5-methyltransferase (EC 2.1.1.-)	2.1.1.-	CDS	"Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2"			gs-sh	0	0	
protein sirB2		sirB2	Uncharacterized protein conserved in bacteria		CDS	FIG002082: Protein SirB2			gs-sh	lit-s	0	
tetratricopeptide repeat family protein			Uncharacterized conserved protein		CDS	FIG002708: Protein SirB1			0	0	0	
3-deoxy-8-phosphooctulonate synthase	2.5.1.55	kdsA	3-deoxy-8-phosphooctulonate synthase	2.5.1.55	CDS	2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase	2.5.1.55		base_lit-s	base_ec	base_ec	
calcium/proton antiporter		chaA	calcium/proton exchanger		CDS	Calcium/proton antiporter			gs-sh	lit-s	orth	
cation transport regulator ChaB		chaB	Putative cation transport regulator		CDS	Cation transport regulator chaB			gs-sh	lit-s	gs-sh	
chaC-like family protein			Uncharacterized protein involved in cation transport		CDS	Cation transport protein chaC			gs-sh	gs-sh	gs-sh	
protein ychN		ychN	Uncharacterized conserved protein involved in intracellular sulfur reduction		CDS	Putative ACR protein			gs-sh	orth	map	
conserved hypothetical protein			Protein of unknown function (DUF3442).		CDS	Invasin			base_one HP	base_one HP	0	
response regulator		narL	two component transcriptional regulator, LuxR family		CDS	Nitrate/nitrite response regulator protein			gs-sh	tf_idf	map	
nitrate/nitrite sensor protein narX	2.7.13.3	narX	Signal transduction histidine kinase, nitrate/nitrite-specific	2.7.13.3	CDS	Nitrate/nitrite sensor protein	2.7.3.-		base_ec	orth	map	
putative predicted protein			hypothetical protein		CDS	FIG00637970: hypothetical protein			base_one HP	lit-s	base_one HP	
nitrite extrusion protein 1		narK	nitrite extrusion protein (nitrite facilitator)		CDS	Nitrate/nitrite transporter			gs-sh	gs-sh	map	
nitrate reductase, alpha subunit	1.7.99.4		respiratory nitrate reductase alpha subunit apoprotein	1.7.99.4	CDS	Respiratory nitrate reductase alpha chain	1.7.99.4		base_tigr	base_ec	base_ec	
nitrate reductase, beta subunit	1.7.99.4	narH	respiratory nitrate reductase beta subunit	1.7.99.4	CDS	Respiratory nitrate reductase beta chain	1.7.99.4		base_tigr	base_ec	base_ec	
nitrate reductase molybdenum cofactor assembly chaperone		narJ	respiratory nitrate reductase chaperone NarJ		CDS	Respiratory nitrate reductase delta chain	1.7.99.4		base_tigr	gs-sh	map	
respiratory nitrate reductase, gamma subunit	1.7.99.4	narI	respiratory nitrate reductase gamma subunit	1.7.99.4	CDS	Respiratory nitrate reductase gamma chain	1.7.99.4		base_tigr	base_ec	base_ec	
formyltetrahydrofolate deformylase	3.5.1.10	purU	formyltetrahydrofolate deformylase (EC 3.5.1.10)	3.5.1.10	CDS	Formyltetrahydrofolate deformylase	3.5.1.10		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	UPF0225 protein YchJ			base_one HP	base_one HP	0	
patatin-like phospholipase family protein			Predicted esterase of the alpha-beta hydrolase superfamily		CDS	UPF0028 protein YchK			0	0	0	
protein hnr		hnr	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains		CDS	Hnr protein			gs-sh	lit-s	map	
UTP-glucose-1-phosphate uridylyltransferase	2.7.7.9	galU	UDP-glucose pyrophosphorylase (EC 2.7.7.9)	2.7.7.9	CDS	UTP--glucose-1-phosphate uridylyltransferase	2.7.7.9		base_tigr	base_ec	base_ec	
DNA-binding protein H-NS		hns	nucleoid protein H-NS		CDS	DNA-binding protein H-NS			gs-sh	base_lit-s	map	
thymidine kinase family protein			thymidine kinase (EC 2.7.1.21)	2.7.1.21	CDS	Thymidine kinase	2.7.1.21		lit-s	lit-s	base_ec	
putative acetaldehyde dehydrogenase 2			hypothetical protein		CDS	Mobile element protein			base_one HP	0	base_one HP	
insertion element 4 transposase N-terminal family protein			Insertion element 4 transposase N-terminal.		CDS	Mobile element protein			lit-s	0	0	
aldehyde-alcohol dehydrogenase	1.2.1.10	adhE	acetaldehyde dehydrogenase (EC 1.2.1.10)/alcohol dehydrogenase AdhE (EC 1.1.1.1)	1.2.1.10, 1.1.1.1	CDS	Alcohol dehydrogenase; Acetaldehyde dehydrogenase	1.1.1.1, 1.2.1.10		base_ec-d	base_ec-d	base_ec-d	
marC integral membrane family protein			membrane protein, MarC family		CDS	Putative membrane protein			gs-sh	orth	orth	
putative predicted protein			hypothetical protein		CDS	FIG00638240: hypothetical protein			base_one HP	lit-s	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
periplasmic oligopeptide-binding protein		oppA	ABC-type oligopeptide transport system, periplasmic component		CDS	"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)"			gs-sh	gs-sh	gs-sh	
oligopeptide transport system permease protein oppB		oppB	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)			gs-sh	lit-s	gs-sh	
oligopeptide transport system permease protein oppC		oppC	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)			gs-sh	lit-s	gs-sh	
oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein			oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain		CDS	Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)			base_tigr	0	0	
oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein			oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain		CDS	Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)			base_tigr	map	gs-sh	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG002901: hypothetical protein co-occurring with Cardiolipin synthetase			base_one HP	base_one HP	0	
cardiolipin synthase	2.7.8.-	cls	cardiolipin synthetase 2 (EC 2.7.8.-)	2.7.8.-	CDS	Cardiolipin synthetase	2.7.8.-		gs-sh	lit-s	tf_idf	
voltage-gated potassium channel Kch		kch	K+ transport systems, NAD-binding component		CDS	Potassium channel protein			gs-sh	0	0	
protein yciI		yciI	Uncharacterized protein conserved in bacteria		CDS	YciL protein			gs-sh	0	0	
protein tonB		tonB	TonB family C-terminal domain		CDS	"Ferric siderophore transport system, periplasmic binding protein TonB"			lit-s	gs-sh	pfam-sh	
conserved hypothetical protein			Acyl-CoA hydrolase	3.1.2.-	CDS	"Acyl-CoA thioesterase YciA, involved in membrane biogenesis"			base_one HP	base_one HP	0	
intracellular septation protein A		ispZ	intracellular septation protein A		CDS	Intracellular septation protein IspA			base_lit-s	gs-sh	gs-sh	
conserved hypothetical protein			Uncharacterised protein family (UPF0259).		CDS	"Membrane protein YciC, linked to IspA"			base_one HP	base_one HP	gs-sh	
outer membrane protein W		ompW	Outer membrane protein W		CDS	Outer membrane protein W precursor			lit-s	tf_idf	tf_idf	
protein yciE		yciE	Uncharacterized protein conserved in bacteria		CDS	Protein YciE			gs-sh	lit-s	0	
protein yciF		yciF	Uncharacterized protein conserved in bacteria		CDS	Protein yciF			gs-sh	lit-s	gs-sh	
conserved hypothetical protein			Stress-induced bacterial acidophilic repeat motif.		CDS	Conidiation-specific protein 10			base_one HP	base_one HP	0	
tryptophan synthase, alpha subunit	4.2.1.20	trpA	tryptophan synthase, alpha chain (EC 4.2.1.20)	4.2.1.20	CDS	Tryptophan synthase alpha chain	4.2.1.20		base_tigr	base_ec	base_ec	
tryptophan synthase, beta subunit	4.2.1.20	trpB	tryptophan synthase, beta chain (EC 4.2.1.20)	4.2.1.20	CDS	Tryptophan synthase beta chain	4.2.1.20		base_tigr	base_ec	base_ec	
tryptophan biosynthesis protein trpCF	5.3.1.24	trpC	Indole-3-glycerol phosphate synthase	4.1.1.48, 5.3.1.24	CDS	Indole-3-glycerol phosphate synthase / Phosphoribosylanthranilate isomerase	4.1.1.48, 5.3.1.24		base_ec-d	base_ec-d	base_ec	
anthranilate synthase component II	2.4.2.18	trpD	glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase	2.4.2.18, 4.1.3.27	CDS	"Anthranilate synthase, amidotransferase component / Anthranilate phosphoribosyltransferase # TrpAb/TrpB"	4.1.3.27, 2.4.2.18		base_ec-d	base_ec-d	base_ec-d	
anthranilate synthase component I	4.1.3.27	trpE	anthranilate synthase, component I (EC 4.1.3.27)	4.1.3.27	CDS	"Anthranilate synthase, aminase component"	4.1.3.27		base_tigr	base_ec	base_ec	
PHP domain protein			Predicted metal-dependent phosphoesterases (PHP family)		CDS	"COG0613, Predicted metal-dependent phosphoesterases (PHP family)"			pfam-sh	pfam-sh	pfam-sh	
conserved hypothetical protein			Sua5/YciO/YrdC/YwlC family protein		CDS	YciO family			base_one HP	base_one HP	0	
conserved hypothetical protein			Predicted membrane protein (DUF2207).		CDS	FIG00637979: hypothetical protein			base_one HP	base_one HP	0	
pseudouridine synthase family protein	5.4.99.-		ribosomal large subunit pseudouridine synthase B	5.4.99.22,5.4.99.-	CDS	Ribosomal large subunit pseudouridine synthase B	4.2.1.70		base_tigr	tf_idf	lit-s	
cob(I)yrinic acid a,c-diamide adenosyltransferase	2.5.1.17	cobO	cob(I)yrinic acid a,c-diamide adenosyltransferase (EC 2.5.1.17)	2.5.1.17	CDS	Cob(I)alamin adenosyltransferase	2.5.1.17		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	Putative oxidoreductase			base_one HP	base_one HP	0	
putative protease sohB			inner membrane peptidase. Serine peptidase. MEROPS family S49	3.4.21.-	CDS	Possible protease sohB	3.4.21.-		gs-sh	lit-s	gs-sh	
protein yciN		yciN	Protein of unknown function (DUF2498).		CDS	Protein yciN			gs-sh	lit-s	gs-sh	
DNA topoisomerase I	5.99.1.2	topA	DNA topoisomerase I (EC 5.99.1.2)	5.99.1.2	CDS	DNA topoisomerase I	5.99.1.2		base_tigr	base_lit-s	base_ec	
HTH-type transcriptional regulator CysB		cysB	Transcriptional regulator		CDS	Cys regulon transcriptional activator CysB			gs-sh	map	tf_idf	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638229: hypothetical protein			lit-s	base_one HP	base_one HP	
aconitate hydratase 1	4.2.1.3	acnA	aconitase (EC 4.2.1.3)	4.2.1.3	CDS	Aconitate hydratase @ 2-methylisocitrate dehydratase	4.2.1.3, 4.2.1.99		base_tigr	base_ec-d	base_ec-d	
GTP cyclohydrolase-2	3.5.4.25	ribA	GTP cyclohydrolase II (EC 3.5.4.25)	3.5.4.25	CDS	GTP cyclohydrolase II	3.5.4.25		base_ec	base_ec	base_ec	
phosphatidylglycerophosphatase B	3.1.3.27	pgpB	phosphatidylglycerophosphatase (EC 3.1.3.27)	3.1.3.27	CDS	Phosphatidylglycerophosphatase B	3.1.3.27		base_ec	base_ec	base_ec	
inner membrane protein yciS		yciS	Predicted membrane protein		CDS	Inner membrane protein yciS			gs-sh	lit-s	gs-sh	
TPR repeat family protein			Predicted N-acetylglucosaminyl transferase		CDS	"Heat shock (predicted periplasmic) protein YciM, precursor"			0	0	0	
orotidine 5'-phosphate decarboxylase	4.1.1.23	pyrF	orotidine-5'-phosphate decarboxylase (EC 4.1.1.23)	4.1.1.23	CDS	Orotidine 5'-phosphate decarboxylase	4.1.1.23		base_ec	base_ec	base_ec	
conserved hypothetical protein			translation initiation factor 1 (eIF-1/SUI1)		CDS	Translation initiation factor SUI1-related protein			base_one HP	base_one HP	pfam-sh	
glycine zipper 2TM domain protein			Glycine zipper 2TM domain.		CDS	Osmotically inducible lipoprotein B precursor			lit-s	0	0	
deoR C terminal sensor domain protein			transcriptional regulator, DeoR family		CDS	Transcriptional regulatory protein YciT			gs-sh	0	0	
putative uPF0509 protein yciZ			hypothetical protein		CDS	FIG00638067: hypothetical protein			base_one HP	0	base_one HP	
cyclic di-GMP phosphodiesterase Gmr	3.1.4.52	gmr	diguanylate cyclase/phosphodiesterase	3.1.4.52	CDS	hypothetical protein			base_ec	base_one HP	base_one HP	
exoribonuclease II	3.1.13.1	rnb	exoribonuclease II	3.1.13.1	CDS	Exoribonuclease II	3.1.13.1		base_lit-s	base_ec	base_ec	
putative amidase/amidotransferase			Uncharacterized protein conserved in bacteria		CDS	FIG01220641: hypothetical protein			0	0	lit-s	
enoyl-[acyl-carrier-protein] reductase [NADH] FabI	1.3.1.9	fabI	Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)	1.3.1.9	CDS	Enoyl-[acyl-carrier-protein] reductase [NADH]	1.3.1.9		base_ec	base_ec	base_ec	
conserved hypothetical protein						FIG00638073: hypothetical protein			base_one HP	base_one HP	base_one miss	
peptide transport system ATP-binding protein SapF		sapF	ABC-type antimicrobial peptide transport system, ATPase component		CDS	Peptide transport system ATP-binding protein SapF			gs-sh	lit-s	map	
oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein			oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain		CDS	Peptide transport system ATP-binding protein SapD			base_tigr	0	0	
peptide transport system permease protein sapC		sapC	ABC-type antimicrobial peptide transport system, permease component		CDS	Peptide transport system permease protein SapC			gs-sh	lit-s	orth	
peptide transport system permease protein sapB		sapB	ABC-type antimicrobial peptide transport system, permease component		CDS	Peptide transport system permease protein SapB			gs-sh	lit-s	orth	
bacterial extracellular solute-binding s, 5 Middle family protein			ABC-type oligopeptide transport system, periplasmic component		CDS	Peptide transport periplasmic protein SapA			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2543).		CDS	FIG00639322: hypothetical protein			base_one HP	base_one HP	lit-s	
putrescine importer PuuP		puuP	putrescine:proton symporter, AAT family (TC 2.A.3.1.13)		CDS	Putrescine importer			gs-sh	gs-sh	map	
gamma-glutamylputrescine synthetase PuuA	6.3.1.11	puuA	glutamate--putrescine ligase	6.3.1.11	CDS	Gamma-glutamyl-putrescine synthetase	6.3.1.11		base_ec	base_ec	base_ec	
glutamine amidotransferase class-I family protein			gamma-glutamyl-gamma-aminobutyrate hydrolase	3.5.1.94	CDS	Gamma-glutamyl-GABA hydrolase	3.5.1.94		0	0	base_ec	
HTH-type transcriptional regulator PuuR		puuR	transcriptional regulator, XRE family with cupin sensor		CDS	Putrescine utilization regulator			gs-sh	0	0	
aldehyde dehydrogenase PuuC	1.2.1.5	puuC	gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase	1.2.1.-	CDS	Gamma-glutamyl-aminobutyraldehyde dehydrogenase	1.2.1.-		gs-sh	0	0	
gamma-glutamylputrescine oxidoreductase	1.4.3.-	puuB	gamma-glutamylputrescine oxidase	1.4.3.-	CDS	Gamma-glutamyl-putrescine oxidase (EC1.4.3.-)			gs-sh	0	0	
4-aminobutyrate transaminase	2.6.1.19	gabT	4-aminobutyrate aminotransferase apoenzyme (EC 2.6.1.19)	2.6.1.19	CDS	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase	2.6.1.19		base_tigr	base_ec	base_ec	
psp operon transcriptional activator		pspF	psp operon transcriptional activator PspF		CDS	Psp operon transcriptional activator			base_tigr	lit-s	orth	
phage shock protein A		pspA	phage shock protein A (PspA) family protein		CDS	Phage shock protein A			base_tigr	lit-s	tf_idf	
phage shock protein B		pspB	phage shock protein B		CDS	Phage shock protein B			base_lit-s	lit-s	lit-s	
phage shock protein C		pspC	phage shock protein C (PspC) family protein		CDS	Phage shock protein C			base_tigr	lit-s	tf_idf	
phage shock PspD family protein			phage shock protein PspD		CDS	Phage shock protein D			lit-s	tf_idf	orth	
thiosulfate sulfurtransferase PspE	2.8.1.1	pspE	thiosulfate sulfurtransferase	2.8.1.1	CDS	Phage shock protein E precursor			base_ec	0	0	
alpha amylase, catalytic domain protein			sucrose phosphorylase (EC 2.4.1.7)	2.4.1.7	CDS	Putative sucrose phosphorylase	2.4.1.7		0	0	base_ec	
bacterial extracellular solute-binding family protein			carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)		CDS	"ABC-type sugar transport system, periplasmic binding protein YcjN"			0	0	0	
binding--dependent transport system inner membrane component family protein			carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)		CDS	Inner membrane ABC transporter permease protein YcjO			0	0	0	
binding--dependent transport system inner membrane component family protein			carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)		CDS	Inner membrane ABC transporter permease protein YcjP			0	0	0	
zinc-binding dehydrogenase family protein			Threonine dehydrogenase and related Zn-dependent dehydrogenases		CDS	Zinc-type alcohol dehydrogenase YcjQ			0	0	0	
xylose isomerase-like TIM barrel family protein			Sugar phosphate isomerases/epimerases		CDS	Sugar phosphate isomerases/epimerases family protein YcjR			0	0	0	
conserved hypothetical protein			Predicted dehydrogenases and related proteins		CDS	"Putative oxidoreductase YcjS, NADH-binding"	1.-.-.-		base_one HP	base_one HP	0	
glycosyl hydrolase family 65 central catalytic domain protein			Trehalose and maltose hydrolases (possible phosphorylases)	3.2.1.-	CDS	Maltose phosphorylase / Trehalose phosphorylase	2.4.1.8, 2.4.1.64		0	0	0	
beta-phosphoglucomutase	5.4.2.6	pgmB	beta-phosphoglucomutase	5.4.2.6	CDS	Beta-phosphoglucomutase	5.4.2.6		base_lit-s	base_ec	base_ec	
ABC transporter family protein			carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)		CDS	"Multiple sugar ABC transporter, ATP-binding protein"			0	0	0	
outer membrane protein G		ompG	Outer membrane protein G (OmpG).		CDS	Outer membrane protein G precursor			gs-sh	orth	tf_idf	
helix-turn-helix family protein			transcriptional regulator, LacI family		CDS	"Transcriptional regulator YcjW, LacI family, possibly involved in maltodextrin utilization pathway"			0	0	pfam-sh	
conserved hypothetical protein			Predicted ATPase		CDS	Conserved protein YcjX with nucleoside triphosphate hydrolase domain			base_one HP	base_one HP	0	
conserved hypothetical protein			TIGR01620 family protein		CDS	Membrane protein YcjF			base_one HP	base_one HP	0	
transcriptional regulatory protein tyrR		tyrR	Transcriptional regulator of aromatic amino acids metabolism		CDS	Transcriptional repressor protein TyrR			gs-sh	gs-sh	gs-sh	
thiol peroxidase	1.11.1.-	tpx	thiol peroxidase (atypical 2-Cys peroxiredoxin)	1.11.1.15,1.11.1.5	CDS	"Thiol peroxidase, Tpx-type"	1.11.1.15		gs-sh	tf_idf	base_ec-d	
zinc carboxypeptidase family protein			Predicted carboxypeptidase		CDS	Gamma-D-Glutamyl-meso-Diaminopimelate Amidase			0	0	0	
L-Ala-D/L-Glu epimerase	5.1.1.-	ycjG	L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily		CDS	L-alanine-DL-glutamate epimerase			gs-sh	0	0	
conserved hypothetical protein			hypothetical protein		CDS	Oxidoreductase (putative)			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Hydrolases of the alpha/beta superfamily		CDS	Dienelactone hydrolase and related enzymes			base_one HP	base_one HP	0	
bacterial regulatory helix-turn-helix , lysR family protein			transcriptional regulator, LysR family		CDS	LysR family transcriptional regulator YcjZ			gs-sh	gs-sh	gs-sh	
periplasmic murein peptide-binding protein		mppA	ABC-type oligopeptide transport system, periplasmic component		CDS	Periplasmic Murein Peptide-Binding Protein MppA			gs-sh	tf_idf	map	
mechanosensitive ion channel family protein			Small-conductance mechanosensitive channel		CDS	Mechanosensitive ion channel			map	lit-s	orth	
transposase DDE domain protein			Transposase and inactivated derivatives, IS5 family		CDS	Mobile element protein			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2534).		CDS	Putative inner membrane protein			base_one HP	base_one HP	0	
universal stress protein E		uspE	Universal stress protein UspA and related nucleotide-binding proteins		CDS	Universal stress protein E			gs-sh	lit-s	orth	
fumarate and nitrate reduction regulatory protein		fnr	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases		CDS	Fumarate and nitrate reduction regulatory protein			gs-sh	lit-s	map	
methylated-DNA--protein-cysteine methyltransferase	2.1.1.63	ogt	O-6-methylguanine DNA methyltransferase	2.1.1.63	CDS	Methylated-DNA--protein-cysteine methyltransferase	2.1.1.63		base_ec	base_ec	base_ec	
aminobenzoyl-glutamate transport protein		abgT	p-Aminobenzoyl-glutamate transporter family		CDS	Aminobenzoyl-glutamate transport protein			gs-sh	lit-s	map	
amidohydrolase family protein			p-Aminobenzoyl-glutamate hydrolase, B subunit		CDS	"Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit B"			base_tigr	0	0	
indole-3-acetyl-aspartic acid hydrolase	3.5.1.-	iaaH	p-aminobenzoyl-glutamate hydrolase, A subunit		CDS	"Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A"			gs-sh	0	0	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	"Regulatory protein (induces abgABT, used to catabolize p-aminobenzoyl-glutamate)"			gs-sh	0	0	
									base_both miss	base_both miss	base_both miss	
smr domain protein			Uncharacterized protein conserved in bacteria		CDS	FIG00638524: hypothetical protein			0	0	lit-s	
putative diguanylate cyclase YdaM			PAS domain S-box/diguanylate cyclase (GGDEF) domain		CDS	FIG00638107: hypothetical protein			0	0	0	
zinc transport protein ZntB		zntB	Mg2+ and Co2+ transporters		CDS	Zinc transport protein ZntB			gs-sh	lit-s	map	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
ATP-independent RNA helicase dbpA	3.6.4.13	dbpA	ATP-dependent RNA helicase DbpA	3.6.4.13,5.99.1.-	CDS	ATP-dependent 23S rRNA helicase DbpA			gs-sh	gs-sh	pfam-sh	
tRNA 2-thiocytidine biosynthesis protein TtcA		ttcA	tRNA s(2)C-32 sulfurtransferase	2.8.1.4	CDS	tRNA(Cytosine32)-2-thiocytidine synthetase			gs-sh	gs-sh	gs-sh	
putative lambdoid prophage Rac integrase			Site-specific recombinase XerD		CDS	hypothetical protein			0	base_one HP	base_one HP	
putative excisionase			Putative excisionase (DUF1233).		CDS	ydaQ protein			lit-s	orth	gs-sh	
			Protein of unknown function (DUF1187).		CDS				base_one miss	base_both miss	base_one miss	
protein recT		recT	recombinase, phage RecT family		CDS	Recombinational DNA repair protein RecT (prophage associated)			gs-sh	map	pfam-sh	
exodeoxyribonuclease 8	3.1.11.-	recE	Enterobacterial exodeoxyribonuclease VIII./PDDEXK-like domain of unknown function (DUF3799).	3.1.11.-	CDS	Exodeoxyribonuclease VIII	3.1.11.-		gs-sh	gs-sh	gs-sh	
putative rac prophage; predicted protein			hypothetical protein		CDS	Phage protein			base_one HP	0	base_one HP	
rtr1/RPAP2 family protein			Rtr1/RPAP2 family.		CDS	Putative bacteriophage protein			lit-s	0	0	
protein kil		kil	hypothetical protein		CDS	Kil protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF1391).		CDS	Mobile element protein			base_one HP	base_one HP	0	
superinfection exclusion B family protein			Superinfection exclusion protein B.		CDS	Superinfection exclusion protein B			lit-s	lit-s	lit-s	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
			Uncharacterized protein conserved in bacteria, prophage-related		CDS				base_one miss	base_both miss	base_one miss	
conserved hypothetical protein			Protein of unknown function (DUF1019).		CDS	FIG00639855: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00638968: hypothetical protein			base_one HP	base_one HP	lit-s	
DNA replication protein dnaC		dnaC	phage DNA replication protein (predicted replicative helicase loader)		CDS	Bacteriophage-encoded homolog of DNA replication protein DnaC			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Mn-dependent transcriptional regulator		CDS	Uncharacterized protein ydaW			base_one HP	base_one HP	gs-sh	
bacteriophage lysis family protein			Bacteriophage lysis protein.		CDS	Endopeptidase	3.4.-.-		lit-s	0	0	
trk system potassium uptake protein trkG		trkG	potassium uptake protein, TrkH family		CDS	Trk system potassium uptake protein TrkG			gs-sh	lit-s	gs-sh	
parB-like nuclease domain protein			Predicted transcriptional regulators		CDS	Chromosome (plasmid) partitioning protein ParB			gs-sh	gs-sh	gs-sh	
putative rac prophage; predicted protein			hypothetical protein		CDS	FIG00642729: hypothetical protein			base_one HP	0	base_one HP	
prophage tail length tape measure family protein			Prophage tail length tape measure protein.		CDS	Phage tail length tape-measure protein 1			lit-s	0	0	
transposase DDE domain protein			transposase, IS5 family		CDS	Mobile element protein			0	0	0	
enterobacterial Ail/Lom family protein						Attachment invasion locus protein precursor			base_one miss	0	base_one miss	
putative predicted protein						FIG00638731: hypothetical protein			base_one miss	lit-s	base_one miss	
conserved hypothetical protein						hypothetical protein			base_one HP	lit-s	base_one HP	
conserved domain protein			hypothetical protein		CDS	Phage tail fiber protein			base_one HP	0	base_one HP	
phage tail fibre repeat family protein			Phage tail fibre repeat./Phage Tail Collar Domain.		CDS	Phage tail fiber protein			0	0	0	
tail fiber assembly protein		tfa	Bacteriophage tail assembly protein		CDS	Phage tail fiber assembly protein			gs-sh	0	0	
putative DNA-invertase from lambdoid prophage Rac			Site-specific recombinases, DNA invertase Pin homologs		CDS	Mobile element protein			0	0	0	
putative rac prophage; predicted DNA-binding transcriptional regulator			hypothetical protein		CDS	FIG00640097: hypothetical protein			base_one HP	0	base_one HP	
conserved hypothetical protein						FIG00639451: hypothetical protein			base_one HP	base_one HP	base_one miss	
conserved hypothetical protein			Universal stress protein UspA and related nucleotide-binding proteins		CDS	Universal stress protein F			base_one HP	base_one HP	tf_idf	
outer membrane protein N		ompN	Outer membrane protein (porin)		CDS	Outer membrane protein N precursor			gs-sh	tf_idf	tf_idf	
ferredoxin (flavodoxin) oxidoreductase	1.2.7.1	nifJ	pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	1.2.7.-	CDS	Pyruvate-flavodoxin oxidoreductase	1.2.7.-		base_tigr	gs-sh	map	
heat shock protein hslJ		hslJ	Heat shock protein		CDS	Heat shock protein hslJ			gs-sh	lit-s	gs-sh	
conserved hypothetical protein			Putative hemolysin		CDS	probable lipoprotein YPO2331			base_one HP	base_one HP	0	
D-lactate dehydrogenase	1.1.1.28	ldhA	Lactate dehydrogenase and related dehydrogenases	1.1.1.28	CDS	D-lactate dehydrogenase	1.1.1.28		base_ec	base_lit-s	base_ec	
dicarboxylate transport family protein			Dicarboxylate transport.		CDS	Putative uncharacterized protein ydbH			lit-s	map	gs-sh	
ynbE-like lipofamily protein			YnbE-like lipoprotein.		CDS	Uncharacterized protein ynbE; probable lipoprotein STY1424			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	"Putative uncharacterized protein ydbL, may be related to amine metabolism"			base_one HP	base_one HP	gs-sh	
transcriptional activator feaR		feaR	transcriptional regulator, AraC family		CDS	Transcriptional activator feaR			gs-sh	lit-s	gs-sh	
phenylacetaldehyde dehydrogenase	1.2.1.39	feaB	phenylacetaldehyde dehydrogenase (EC 1.2.1.39)	1.2.1.39	CDS	Phenylacetaldehyde dehydrogenase	1.2.1.39		base_ec	base_ec	base_ec	
primary amine oxidase	1.4.3.21	tynA	tyramine oxidase	1.4.3.21,1.4.3.-	CDS	Monoamine oxidase (1.4.3.4)			gs-sh	0	0	
phenylacetic acid degradation protein paaN		paaN	phenylacetic acid degradation protein paaN		CDS	COG1012: NAD-dependent aldehyde dehydrogenases			base_lit-s	0	0	
phenylacetic acid degradation protein paaA		paaA	phenylacetate-CoA oxygenase, PaaG subunit		CDS	"Phenylacetate-CoA oxygenase, PaaG subunit"			gs-sh	gs-sh	lit-s	
phenylacetic acid degradation B family protein			phenylacetate-CoA oxygenase, PaaH subunit		CDS	"Phenylacetate-CoA oxygenase, PaaH subunit"			0	0	lit-s	
phenylacetic acid degradation protein paaC		paaC	phenylacetate-CoA oxygenase, PaaI subunit		CDS	"Phenylacetate-CoA oxygenase, PaaI subunit"			gs-sh	gs-sh	lit-s	
phenylacetate-CoA oxygenase, PaaJ subunit		paaJ	phenylacetate-CoA oxygenase, PaaJ subunit		CDS	"Phenylacetate-CoA oxygenase, PaaJ subunit"			base_lit-s	lit-s	lit-s	
2Fe-2S iron-sulfur cluster binding domain protein			phenylacetate-CoA oxygenase/reductase, PaaK subunit		CDS	"Phenylacetate-CoA oxygenase/reductase, PaaK subunit"			0	0	lit-s	
putative enoyl-CoA hydratase, mitochondrial			Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	Phenylacetate degradation enoyl-CoA hydratase PaaA	4.2.1.17		0	0	base_ec	
phenylacetate degradation putative enoyl-CoA hydratase PaaB	4.2.1.17	paaB	phenylacetate degradation probable enoyl-CoA hydratase paaB		CDS	Phenylacetate degradation enoyl-CoA hydratase PaaB	4.2.1.17		base_tigr	base_ec	lit-s	
3-hydroxyacyl-CoA dehydrogenase PaaC	1.1.1.-	paaC	3-hydroxyacyl-CoA dehydrogenase PaaC	1.1.1.157	CDS	3-hydroxyacyl-CoA dehydrogenase PaaC	1.1.1.-		base_lit-s	base_lit-s	base_lit-s	
phenylacetic acid degradation protein PaaD		paaD	phenylacetic acid degradation protein PaaD	3.1.2.-	CDS	"Phenylacetic acid degradation protein PaaD, thioesterase"			base_lit-s	gs-sh	gs-sh	
3-oxoadipyl-CoA thiolase	2.3.1.174	pcaF	3-oxoadipyl-CoA thiolase	2.3.1.-	CDS	"Phenylacetic acid degradation protein PaaE, ketothiolase"			base_lit-s	0	0	
phenylacetate-CoA ligase	6.2.1.30	paaF	phenylacetate-CoA ligase (EC 6.2.1.30)	6.2.1.30	CDS	Phenylacetate-coenzyme A ligase PaaF	6.2.1.30		base_tigr	base_ec	base_ec	
phenylacetic acid degradation operon negative regulatory protein PaaX		paaX	transcriptional regulator, PaaX family		CDS	Phenylacetic acid degradation operon negative regulatory protein PaaX			base_tigr	lit-s	pfam-sh	
phenylacetic acid degradation protein PaaY		paaY	phenylacetic acid degradation protein PaaY		CDS	Phenylacetic acid degradation protein PaaY			base_lit-s	lit-s	lit-s	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
autotransporter (AT) family porin		ydbA	hypothetical protein		CDS	BigB			base_one HP	0	base_one HP	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives, IS30 family		CDS	Mobile element protein			0	0	0	
autotransporter beta-domain protein			Autotransporter beta-domain.		CDS	putative BigB-like protein			lit-s	0	0	
putative oxidoreductase YdbC			Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)		CDS	Aldo-keto reductase			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2773).		CDS	FIG00638289: hypothetical protein			base_one HP	base_one HP	lit-s	
inner membrane protein ynbA		ynbA	Phosphatidylglycerophosphate synthase		CDS	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	2.7.8.5		gs-sh	orth	orth	
cytidylyltransferase family protein			Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase	2.7.7.41	CDS	Phosphatidate cytidylyltransferase	2.7.7.41		0	0	base_ec	
conserved hypothetical protein			Lysophospholipase		CDS	Putative lipase in cluster with Phosphatidate cytidylyltransferase			base_one HP	base_one HP	0	
conserved hypothetical protein			Predicted protein-tyrosine phosphatase		CDS	Ser/Thr and Tyr protein phosphatase (dual specificity)			base_one HP	base_one HP	0	
NADPH-dependent FMN reductase family protein			Acyl carrier protein phosphodiesterase	1.7.-	CDS	FMN-dependent NADH-azoreductase			0	0	orth	
ATP-dependent helicase HrpA	3.6.4.-	hrpA	ATP-dependent helicase HrpA	3.6.4.13	CDS	ATP-dependent helicase HrpA			base_lit-s	base_lit-s	base_lit-s	
protein ydcF		ydcF	Uncharacterized conserved protein		CDS	Protein ydcF			gs-sh	lit-s	gs-sh	
lactaldehyde dehydrogenase	1.2.1.21	aldA	lactaldehyde dehydrogenase	1.2.1.21, 1.2.1.22,1.2.1.22	CDS	Aldehyde dehydrogenase A / Glycolaldehyde dehydrogenase	1.2.1.22, 1.2.1.21		base_lit-s	base_ec-d	base_ec-d	
glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain protein			Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase		CDS	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase	1.2.1.12		0	0	0	
glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain protein			Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase		CDS	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase	1.2.1.12		0	0	0	
conserved hypothetical protein			Cytochrome B561		CDS	Cytochrome b(561)			base_one HP	base_one HP	orth	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638461: hypothetical protein			lit-s	base_one HP	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
									base_both miss	base_both miss	base_both miss	
methyl-accepting chemotaxis protein III		trg	methyl-accepting chemotaxis sensory transducer with TarH sensor		CDS	Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein)			gs-sh	0	0	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	LysR family transcriptional regulator YdcI			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Putative cytoplasmic protein			base_one HP	base_one HP	0	
glucans biosynthesis protein D		mdoD	Periplasmic glucans biosynthesis protein		CDS	Glucans biosynthesis protein D precursor			gs-sh	orth	map	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	YdcH protein			base_one HP	base_one HP	0	
putative transferase			hypothetical protein		CDS	FIG005189: putative transferase clustered with tellurite resistance proteins TehA/TehB			base_one HP	0	base_one HP	
ribosomal-protein-serine acetyltransferase	2.3.1.-	rimL	[LSU ribosomal protein L12P]-serine N-acetyltransferase (EC:2.3.1.-)	2.3.1.-	CDS	Ribosomal-protein-L7p-serine acetyltransferase			gs-sh	0	0	
tellurite resistance protein tehA		tehA	C4-dicarboxylate transporter/malic acid transport protein		CDS	Tellurite resistance protein TehA			gs-sh	lit-s	gs-sh	
tellurite resistance protein TehB		tehB	tellurite resistance protein TehB		CDS	Tellurite resistance protein TehB			base_lit-s	lit-s	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF3313).		CDS	Uncharacterized membrane lipoprotein clustered with tellurite resistance proteins TehA/TehB			base_one HP	base_one HP	0	
transposase IS200 like family protein						Mobile element protein			base_one miss	0	base_one miss	
			Transposase and inactivated derivatives		CDS				base_one miss	base_both miss	base_one miss	
transposase, IS605 OrfB family			transposase, IS605 OrfB family, central region		CDS	putative virulence protein			base_tigr	0	0	
inner membrane protein ydcO		ydcO	benzoate transporter		CDS	Benzoate transport protein			gs-sh	orth	orth	
helix-turn-helix family protein			transcriptional regulator, XRE family with cupin sensor		CDS	"Transcriptional regulator yidN, Cro/CI family"			0	0	0	
conserved hypothetical protein			Collagenase and related proteases	3.4.-	CDS	putative collagenase			base_one HP	base_one HP	orth	
conserved hypothetical protein			Protein of unknown function (DUF2554).		CDS	FIG01045143: hypothetical protein			base_one HP	base_one HP	lit-s	
			YcfA-like protein.		CDS				base_one miss	base_both miss	base_one miss	
antitoxin HicB		hicB	Uncharacterized conserved protein		CDS	FIG00638106: hypothetical protein			gs-sh	0	lit-s	
conserved hypothetical protein			transcriptional regulator, GntR family		CDS	COG1167: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs			base_one HP	base_one HP	0	
bacterial extracellular solute-binding family protein			Spermidine/putrescine-binding periplasmic protein		CDS	"ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)"			0	0	0	
ABC transporter family protein			ABC-type spermidine/putrescine transport systems, ATPase components		CDS	Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)			0	0	0	
inner membrane ABC transporter permease protein ydcU		ydcU	ABC-type spermidine/putrescine transport system, permease component I		CDS	Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1)			gs-sh	0	0	
inner membrane ABC transporter permease protein ydcV		ydcV	ABC-type spermidine/putrescine transport system, permease component II		CDS	Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)			gs-sh	gs-sh	gs-sh	
1-pyrroline dehydrogenase	1.2.1.19	ydcW	1-pyrroline dehydrogenase	1.2.1.19	CDS	4-aminobutyraldehyde dehydrogenase	1.2.1.19		base_lit-s	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF2566).		CDS	FIG00638290: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF2526).		CDS	FIG01045262: hypothetical protein			base_one HP	base_one HP	lit-s	
inner membrane protein ydcZ		ydcZ	Uncharacterized protein conserved in bacteria		CDS	Putative inner membrane protein			gs-sh	orth	0	
acetyltransferase family protein			Sortase and related acyltransferases	2.3.1.183	CDS	Putative acetyltransferase			0	lit-s	0	
zinc-binding dehydrogenase family protein			Putative NADP-dependent oxidoreductases		CDS	Putative oxidoreductase YncB			0	0	0	
HTH-type transcriptional regulator mcbR		mcbR	transcriptional regulator, GntR family		CDS	"Transcriptional regulator, GntR family"			gs-sh	gs-sh	lit-s	
tonB-dependent siderophore receptor family protein			TonB-dependent siderophore receptor		CDS	Probable tonB-dependent receptor yncD precursor			base_tigr	gs-sh	gs-sh	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00638561: hypothetical protein			base_one HP	base_one HP	lit-s	
amino acid permease family protein			asparagine:proton symporter, AAT family (TC 2.A.3.1.8)		CDS	L-asparagine permease			0	0	0	
putative glutathione S-transferase			Glutathione S-transferase		CDS	Uncharacterized GST-like protein yncG			lit-s	gs-sh	gs-sh	
conserved hypothetical protein			hypothetical protein		CDS	FIG00641231: hypothetical protein			lit-s	base_one HP	base_one HP	
RHS repeat-associated core domain protein			RHS repeat-associated core domain		CDS	core protein			base_tigr	0	0	
putative dCTP deaminase			hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
H repeat-associated protein yhhI		yhhI	Transposase		CDS	Transposase			gs-sh	gs-sh	base_lit-s	
H repeat-associated protein ydcC		ydcC	transposase, IS4 family		CDS	Mobile element protein			gs-sh	0	0	
flavin reductase like domain protein			Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family		CDS	NAD(P)H-flavin oxidoreductase			0	0	0	
tautomerase pptA	5.3.2.-	pptA	Uncharacterized protein, 4-oxalocrotonate tautomerase homolog	5.3.2.-	CDS	Probable tautomerase ydcE	5.3.2.-		gs-sh	gs-sh	gs-sh	
N-hydroxyarylamine O-acetyltransferase	2.3.1.118	nhoA	Arylamine N-acetyltransferase	2.3.1.118	CDS	N-hydroxyarylamine O-acetyltransferase	2.3.1.118		base_ec	base_lit-s	base_ec	
conserved hypothetical protein			phenazine biosynthesis protein PhzF family		CDS	Phenazine biosynthesis protein PhzF			base_one HP	base_one HP	lit-s	
respiratory nitrate reductase, gamma subunit	1.7.99.4	narI	respiratory nitrate reductase gamma subunit	1.7.99.4	CDS	Respiratory nitrate reductase gamma chain	1.7.99.4		base_tigr	base_ec	base_ec	
nitrate reductase molybdenum cofactor assembly chaperone		narJ	respiratory nitrate reductase chaperone NarJ		CDS	Respiratory nitrate reductase delta chain	1.7.99.4		base_tigr	gs-sh	orth	
nitrate reductase, beta subunit	1.7.99.4	narH	respiratory nitrate reductase beta subunit	1.7.99.4	CDS	Respiratory nitrate reductase beta chain	1.7.99.4		base_tigr	base_ec	base_ec	
nitrate reductase, alpha subunit	1.7.99.4		respiratory nitrate reductase alpha subunit apoprotein	1.7.99.4	CDS	Respiratory nitrate reductase alpha chain	1.7.99.4		base_tigr	base_ec	base_ec	
nitrite extrusion protein 2		narU	nitrite extrusion protein (nitrite facilitator)		CDS	Nitrate/nitrite transporter			gs-sh	gs-sh	map	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
leucine Rich Repeat family protein			hypothetical protein		CDS	"internalin, putative"			base_one HP	0	base_one HP	
gram-negative porin family protein			Outer membrane protein (porin)		CDS	Outer membrane porin protein NmpC precursor			0	0	tf_idf	
inner membrane protein yddG		yddG	EamA-like transporter family.		CDS	Permease of the drug/metabolite transporter (DMT) superfamily			gs-sh	orth	map	
molybdopterin oxidoreductase family protein			formate dehydrogenase (quinone-dependent) catalytic subunit		CDS				0	base_one miss	base_one miss	
formate dehydrogenase, alpha subunit	1.2.1.2		formate dehydrogenase (quinone-dependent) catalytic subunit	1.2.1.2	CDS	Formate dehydrogenase N alpha subunit @ selenocysteine-containing	1.2.1.2		base_tigr	base_ec	base_ec	
formate dehydrogenase, beta subunit	1.2.1.2	fdxH	formate dehydrogenase (quinone-dependent) iron-sulfur subunit		CDS	"formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit"			base_tigr	tf_idf	map	
formate dehydrogenase, gamma subunit	1.2.1.2		formate dehydrogenase, gamma subunit		CDS	Formate dehydrogenase N gamma subunit	1.2.1.2		base_lit-s	base_ec	tf_idf	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
addiction module antidote protein, HigA family		higA	addiction module antidote protein, HigA family		CDS	HigA protein (antitoxin to HigB)			base_lit-s	gs-sh	gs-sh	
alcohol dehydrogenase, propanol-preferring	1.1.1.1	adhP	Zn-dependent alcohol dehydrogenases	1.1.1.1	CDS	Alcohol dehydrogenase	1.1.1.1		base_ec	base_ec	base_ec	
NAD-dependent malic enzyme	1.1.1.38	maeA	NAD-dependent malic enzyme (EC 1.1.1.38)	1.1.1.38	CDS	NAD-dependent malic enzyme	1.1.1.38		base_ec	base_lit-s	base_ec	
biofilm-dependent modulation family protein			Putative biofilm-dependent modulation protein.		CDS	Bdm protein			lit-s	0	0	
peroxiredoxin osmC	1.11.1.15	osmC	peroxiredoxin, OsmC subfamily		CDS	Osmotically inducible protein C			lit-s	orth	map	
oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein			oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain		CDS	Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2)			base_tigr	map	gs-sh	
oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein			oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain		CDS	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2); Putative hemine transporter ATP-binding subunit			base_tigr	map	gs-sh	
putative D,D-dipeptide transport system permease protein ddpC			ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2); Putative hemine transporter ATP-binding subunit			gs-sh	gs-sh	gs-sh	
putative D,D-dipeptide transport system permease protein ddpB			ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	Dipeptide transport system permease protein DppB (TC 3.A.1.5.2); putative hemin permease			gs-sh	gs-sh	gs-sh	
bacterial extracellular solute-binding s, 5 Middle family protein			ABC-type dipeptide transport system, periplasmic component		CDS	"Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein"			0	0	0	
D-alanyl-D-alanine dipeptidase	3.4.13.22	ddpX	D-alanyl-D-alanine dipeptidase	3.4.13.22	CDS	D-alanyl-D-alanine dipeptidase; Putative metaloprotease associated with hemin utilization	3.4.13.-		base_lit-s	0	0	
oxygen sensor protein DosP	3.1.4.52	dosP	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)	3.1.4.52	CDS	Heme-regulated cyclic AMP phosphodiesterase	3.1.4.-		base_ec	0	0	
diguanylate cyclase domain protein			diguanylate cyclase (GGDEF) domain	2.7.7.65	CDS	Putative Heme-regulated two-component response regulator			base_tigr	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	COG1649 predicted glycoside hydrolase			base_one HP	base_one HP	0	
gamma-aminobutyrate antiporter		gadC	glutamate:gamma-aminobutyrate antiporter, GGA family (TC 2.A.3.7.1)		CDS	Probable glutamate/gamma-aminobutyrate antiporter			base_tigr	gs-sh	map	
glutamate decarboxylase	4.1.1.15		glutamate decarboxylase (EC 4.1.1.15)	4.1.1.15	CDS	Glutamate decarboxylase	4.1.1.15		base_tigr	base_ec	base_ec	
peptidase M16 inactive domain protein			Predicted Zn-dependent peptidases	3.4.24.-	CDS	Probable zinc protease pqqL	3.4.99.-		0	0	gs-sh	
tonB-dependent Receptor Plug domain protein			Outer membrane receptor proteins, mostly Fe transport		CDS	FIG00639422: hypothetical protein			gs-sh	0	0	
inner membrane ABC transporter ATP-binding protein YddA		yddA	ABC-type uncharacterized transport system, permease and ATPase components		CDS	Hypothetical ABC transporter ATP-binding protein yddA			gs-sh	gs-sh	gs-sh	
anaerobic sulfatase maturase	1.1.99.-		anaerobic sulfatase-maturating enzyme		CDS	GALNS arylsulfatase regulator (Fe-S oxidoreductase)			0	0	0	
type I phosphodiesterase / nucleotide pyrophosphatase family protein			Arylsulfatase A and related enzymes		CDS	N-acetylgalactosamine 6-sulfate sulfatase (GALNS)			0	0	0	
bacterial regulatory helix-turn-helix s, AraC family protein			transcriptional regulator, AraC family		CDS	HTH-type transcriptional regulator ydeO			pfam-sh	gs-sh	gs-sh	
two-component-system connector protein SafA		safA	hypothetical protein		CDS	FIG00638897: hypothetical protein			base_one HP	0	base_one HP	
protein ydeP		ydeP	oxidoreductase alpha (molybdopterin) subunit		CDS	Putative formate dehydrogenase oxidoreductase protein			gs-sh	0	0	
protein fimH		fimH	FimH, mannose binding./Fimbrial protein.		CDS	mannose-specific adhesin FimH			gs-sh	0	0	
protein fimG		fimG	P pilus assembly protein, pilin FimA		CDS	type 1 fimbrae adaptor subunit FimG			gs-sh	0	0	
protein fimF		fimF	P pilus assembly protein, pilin FimA		CDS	type 1 fimbrae adaptor subunit FimF			gs-sh	0	0	
type VII secretion system (T7SS), usher family protein			P pilus assembly protein, porin PapC		CDS	Putative outer membrane protein			0	0	0	
serine/threonine-protein kinase HipA	2.7.11.1	hipA	HipA N-terminal domain	2.7.11.1	CDS	HipA protein			base_ec	pfam-sh	lit-s	
antitoxin HipB		hipB	Predicted transcriptional regulators		CDS	HipB protein			gs-sh	gs-sh	gs-sh	
outer membrane autotransporter barrel domain protein			outer membrane autotransporter barrel domain		CDS	FIG00637907: hypothetical protein			base_tigr	0	0	
putative predicted lipoprotein			autotransporter-associated beta strand repeat		CDS	FIG00637907: hypothetical protein			0	0	0	
autoinducer 2 kinase LsrK	2.7.1.-	lsrK	Sugar (pentulose and hexulose) kinases	2.7.1.-	CDS	Autoinducer 2 (AI-2) kinase LsrK	2.7.1.-		gs-sh	0	0	
transcriptional regulator lsrR		lsrR	Transcriptional regulator, contains sigma factor-related N-terminal domain		CDS	"LsrR, transcriptional repressor of lsr operon"			gs-sh	0	0	
heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	autoinducer 2 ABC transporter ATP-binding protein		CDS	"Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component"			gs-sh	0	0	
branched-chain amino acid transport system / permease component family protein			autoinducer 2 ABC transporter membrane protein		CDS	"Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC"			0	0	0	
branched-chain amino acid transport system / permease component family protein			autoinducer 2 ABC transporter membrane protein		CDS	"Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD"			0	0	0	
autoinducer 2-binding protein lsrB		lsrB	autoinducer 2-binding protein		CDS	"Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB"			gs-sh	0	0	
conserved hypothetical protein			DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes	4.1.2.-	CDS	Autoinducer 2 (AI-2) aldolase LsrF	4.2.1.-		base_one HP	base_one HP	0	
autoinducer 2-degrading protein lsrG		lsrG	Uncharacterized conserved protein		CDS	Autoinducer 2 (AI-2) modifying protein LsrG			gs-sh	0	0	
trans-aconitate 2-methyltransferase	2.1.1.144	tam	Trans-aconitate methyltransferase	2.1.1.144	CDS	Trans-aconitate 2-methyltransferase	2.1.1.144		base_ec	base_ec	base_ec	
bestrophin, RFP-TM, chloride channel family protein			Predicted membrane protein		CDS	FIG00638206: hypothetical protein			0	0	0	
mannitol dehydrogenase Rossmann domain protein			tagaturonate reductase (EC 1.1.1.58)	1.1.1.58	CDS	Altronate oxidoreductase	1.1.1.58		0	0	base_ec	
diguanylate cyclase domain protein			diguanylate cyclase (GGDEF) domain		CDS	FIG00638480: hypothetical protein			base_tigr	0	0	
conserved hypothetical protein			Domain of unknown function (DUF4186).		CDS	FIG00637950: hypothetical protein			base_one HP	base_one HP	lit-s	
glutaminase A	3.5.1.2	glsA	L-glutaminase (EC 3.5.1.2)	3.5.1.2	CDS	Glutaminase	3.5.1.2		base_tigr	base_ec	base_ec	
succinate semialdehyde dehydrogenase [NAD(P)+] Sad	1.2.1.16	sad	succinate semialdehyde dehydrogenase	1.2.1.-,1.2.1.16	CDS	Succinate-semialdehyde dehydrogenase [NAD]; Succinate-semialdehyde dehydrogenase [NADP+]	1.2.1.24, 1.2.1.16		gs-sh	base_ec-d	0	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	LysR family transcriptional regulator YneJ			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638496: hypothetical protein			lit-s	base_one HP	base_one HP	
sugar efflux transporter		sotB	Arabinose efflux permease		CDS	Probable sugar efflux transporter			gs-sh	lit-s	map	
marC integral membrane family protein			membrane protein, MarC family		CDS	Multiple antibiotic resistance protein MarC			gs-sh	map	pfam-sh	
multiple antibiotic resistance protein marR		marR	Transcriptional regulators		CDS	Multiple antibiotic resistance protein MarR			gs-sh	lit-s	gs-sh	
multiple antibiotic resistance protein marA		marA	transcriptional regulator, AraC family		CDS	Multiple antibiotic resistance protein MarA			gs-sh	lit-s	orth	
marB family protein			MarB protein.		CDS	Multiple antibiotic resistance protein MarB			lit-s	map	pfam-sh	
putative amino-acid metabolite efflux pump			Predicted permease, DMT superfamily		CDS	Permease of the drug/metabolite transporter (DMT) superfamily			0	0	0	
major Facilitator Superfamily protein			Arabinose efflux permease		CDS	Putative transport protein			0	0	0	
diguanylate cyclase YdeH	2.7.7.65	ydeH	diguanylate cyclase (GGDEF) domain		CDS	FIG00637874: hypothetical protein			gs-sh	0	0	
bacterial OB fold family protein			TIGR00156 family protein		CDS	Putative periplasmic protein			0	0	0	
competence/damage-inducible CinA C-terminal domain protein			competence/damage-inducible protein CinA C-terminal domain		CDS	"C-terminal domain of CinA paralog, YdeJ"			base_tigr	pfam-sh	pfam-sh	
peptidyl-dipeptidase dcp	3.4.15.5	dcp	peptidyl-dipeptidase Dcp (EC 3.4.15.5). Metallo peptidase. MEROPS family M03A	3.4.15.5	CDS	Dipeptidyl carboxypeptidase Dcp	3.4.15.5		base_ec	base_ec	base_ec	
NADP-dependent 3-hydroxy acid dehydrogenase YdfG	1.1.1.298	ydfG	Short-chain alcohol dehydrogenase of unknown specificity	1.1.1.-	CDS	3-hydroxypropionate dehydrogenase	1.1.1.298		gs-sh	base_ec	map	
conserved hypothetical protein			transcriptional regulator, GntR family		CDS	"Transcriptional regulator, GntR family"			base_one HP	base_one HP	lit-s	
putative selenoprotein ydfZ			putative selenium-binding protein YdfZ		CDS	FIG00638357: hypothetical protein			gs-sh	0	0	
mannitol dehydrogenase Rossmann domain protein			Mannitol-1-phosphate/altronate dehydrogenases		CDS	D-mannonate oxidoreductase	1.1.1.57		0	0	0	
H+ symporter family protein			metabolite-proton symporter		CDS	Putative transport protein			base_tigr	0	0	
putative dNA-binding transcriptional regulator			hypothetical protein		CDS	FIG00640097: hypothetical protein			base_one HP	0	base_one HP	
putative DNA-invertase from lambdoid prophage Rac			Site-specific recombinases, DNA invertase Pin homologs		CDS	Mobile element protein			0	0	0	
tail fiber assembly protein		tfa	Bacteriophage tail assembly protein		CDS	Phage tail fiber assembly protein			gs-sh	0	0	
phage tail fibre repeat family protein			Phage tail fibre repeat./Phage Tail Collar Domain.		CDS	Phage tail fiber protein			0	0	0	
terminase small subunit		Nu1	Phage DNA packaging protein, Nu1 subunit of terminase		CDS	Terminase small subunit			0	lit-s	0	
conserved hypothetical protein						FIG00638841: hypothetical protein			base_one HP	base_one HP	base_one miss	
			Phage envelope protein		CDS				base_one miss	base_both miss	base_one miss	
gnsA/GnsB family protein			GnsA/GnsB family.		CDS	GnsB protein			lit-s	0	0	
									base_both miss	base_both miss	base_both miss	
cold shock-like protein CspG		cspG	cold-shock DNA-binding protein family		CDS	Cold shock-like protein cspI			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF2514).		CDS	FIG00639844: hypothetical protein			base_one HP	base_one HP	lit-s	
phage lysozyme family protein			Phage-related lysozyme (muraminidase)		CDS	COG3772: Phage-related lysozyme (muraminidase)			0	0	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF1327).		CDS	FIG00639051: hypothetical protein			base_one HP	base_one HP	lit-s	
lysis S family protein			Lysis protein S.		CDS	Phage holin			lit-s	0	0	
									base_both miss	base_both miss	base_both miss	
cold shock protein CspA		cspA	cold-shock DNA-binding protein family		CDS	Cold shock protein CspB			gs-sh	0	0	
RNA chaperone, negative regulator of cspA transcription		cspE	cold-shock DNA-binding protein family		CDS	Cold shock protein CspF			gs-sh	0	0	
dnaJ central domain protein			DnaJ-class molecular chaperone with C-terminal Zn finger domain		CDS	Phage antitermination protein Q			gs-sh	0	0	
conserved hypothetical protein			Protein of unknown function (DUF968).		CDS	Phage antitermination protein Q			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	Hypothetical rem protein			lit-s	base_one HP	base_one HP	
			Hok/gef family.		CDS				base_one miss	base_both miss	base_one miss	
			addiction module toxin, RelE/StbE family		CDS				base_one miss	base_both miss	base_one miss	
antitoxin RelB		relB	addiction module antitoxin, RelB/DinJ family		CDS	RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)			pfam-sh	pfam-sh	pfam-sh	
flxA-like family protein			FlxA-like protein.		CDS	Protein flxA			lit-s	gs-sh	gs-sh	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF1019).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
putative division inhibition gene repressor protein DicB			hypothetical protein		CDS	Putative regulator of cell division encoded by prophage CP-933O			base_one HP	0	base_one HP	
			Predicted transcriptional regulators		CDS				base_one miss	base_both miss	base_one miss	
conserved hypothetical protein			Protein of unknown function (DUF1391).		CDS	Mobile element protein			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00637981: hypothetical protein			lit-s	base_one HP	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein						hypothetical protein			base_one HP	lit-s	base_one HP	
dicB family protein			DicB protein.		CDS	Division inhibition protein dicB			lit-s	gs-sh	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF1482).		CDS	FIG00637919: hypothetical protein			base_one HP	base_one HP	lit-s	
exonuclease family protein			hypothetical protein		CDS	Exodeoxyribonuclease encoded by cryptic prophage CP-933P			base_one HP	0	base_one HP	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
phage integrase family protein			Site-specific recombinase XerD		CDS	"integrase fragment, cryptic prophage CP-933P"			0	0	0	
zinc-binding dehydrogenase family protein			Threonine dehydrogenase and related Zn-dependent dehydrogenases	1.1.1.-	CDS	Starvation sensing protein RspB			0	0	0	
starvation-sensing protein rspA		rspA	D-mannonate dehydratase	4.2.1.8	CDS	Starvation sensing protein RspA			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Protein of unknown function UPF0060			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF1283).		CDS	putative secreted protein			base_one HP	base_one HP	0	
spermidine N(1)-acetyltransferase	2.3.1.57	speG	spermine/spermidine N-acetyltransferase	2.3.1.57,2.3.1.-	CDS	Spermidine N1-acetyltransferase	2.3.1.57		gs-sh	base_ec	map	
conserved hypothetical protein			Uncharacterised protein family (UPF0257).		CDS	Hypothetical UPF0257 lipoprotein ynfC precursor			base_one HP	base_one HP	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF1161).		CDS	FIG00639146: hypothetical protein			base_one HP	base_one HP	lit-s	
putative dimethyl sulfoxide reductase chain ynfE			anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	1.97.1.9	CDS	"COG0243: Anaerobic dehydrogenases, typically selenocysteine-containing"			gs-sh	0	0	
anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein			anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	1.97.1.9	CDS	"Anaerobic selenate reductase, molybdenum cofactor-containing periplasmic protein # YnfF"			lit-s	0	0	
dimethylsulfoxide reductase, chain B		dmsB	DMSO reductase, iron-sulfur subunit		CDS	Anaerobic selenate reductase protein YnfG			base_tigr	0	0	
DMSO reductase anchor subunit family protein			DMSO reductase anchor subunit		CDS	Anaerobic dimethyl sulfoxide reductase chain C	1.8.99.-		lit-s	0	0	
twin-arginine leader-binding protein dmsD		dmsD	Uncharacterized component of anaerobic dehydrogenases		CDS	Anaerobic dimethyl sulfoxide reductase chaperone DmsD			gs-sh	0	0	
dethiobiotin synthase	6.3.3.3	bioD	dethiobiotin synthase (EC 6.3.3.3)	6.3.3.3	CDS	Dethiobiotin synthetase	6.3.3.3		base_tigr	base_ec	base_ec	
voltage-gated ClC-type chloride channel ClcB		clcB	Chloride channel protein EriC		CDS	FIG00509904: hypothetical protein			gs-sh	0	0	
protein mlc		mlc	Transcriptional regulator/sugar kinase		CDS	"Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon"			gs-sh	gs-sh	gs-sh	
bacterial regulatory helix-turn-helix , lysR family protein			transcriptional regulator, LysR family		CDS	LysR family transcriptional regulator YnfL			gs-sh	gs-sh	gs-sh	
inner membrane transport protein ynfM		ynfM	Arabinose efflux permease		CDS	Permeases of the major facilitator superfamily			gs-sh	orth	map	
acid shock repeat family protein			Acid shock protein repeat.		CDS	Acid shock protein precursor			lit-s	tf_idf	tf_idf	
trypsin family protein			V8-like Glu-specific endopeptidase	3.4.21.-	CDS	Putative protease ydgD	3.4.21.-		0	0	gs-sh	
small Multidrug Resistance family protein			Membrane transporters of cations and cationic drugs		CDS	Spermidine export protein MdtI			0	0	orth	
spermidine export protein mdtJ		mdtJ	Membrane transporters of cations and cationic drugs		CDS	Spermidine export protein MdtJ			gs-sh	lit-s	orth	
conserved hypothetical protein			Predicted permease		CDS	Putative transport protein			base_one HP	base_one HP	0	
NAD(P) transhydrogenase subunit beta	1.6.1.2	pntB	NAD/NADP transhydrogenase beta subunit	1.6.1.2	CDS	NAD(P) transhydrogenase subunit beta	1.6.1.2		base_ec	base_lit-s	base_ec	
NAD(P)(+) transhydrogenase (AB-specific), alpha subunit	1.6.1.2	pntA	NAD(P) transhydrogenase, alpha subunit	1.6.1.2	CDS	NAD(P) transhydrogenase alpha subunit	1.6.1.2		base_tigr	base_ec	base_ec	
protein ydgH		ydgH	Protein of unknown function (DUF1471).		CDS	Protein ydgH precursor			gs-sh	gs-sh	gs-sh	
putative arginine/ornithine antiporter			amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	Arginine/ornithine antiporter ArcD			0	0	gs-sh	
inner membrane protein ydgC		ydgC	Uncharacterized membrane protein required for alginate biosynthesis		CDS	Putative inner membrane protein			gs-sh	orth	orth	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.5.1.3, 1.5.1.-	CDS	FolM Alternative dihydrofolate reductase 1			0	0	0	
response regulator			Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	Transcriptional regulatory protein RstA			0	0	0	
sensor protein rstB	2.7.13.3	rstB	Signal transduction histidine kinase	2.7.13.3	CDS	Sensory histidine kinase in two-component regulatory system with RstA			base_ec	0	0	
fumarate hydratase, class II	4.2.1.2	fumC	fumarase, class II (EC 4.2.1.2)	4.2.1.2	CDS	Fumarate hydratase class II	4.2.1.2		base_tigr	base_ec	base_ec	
DNA replication terminus site-binding protein		tus	DNA replication terminus site binding protein		CDS	DNA replication terminus site-binding protein			base_tigr	base_lit-s	tf_idf	
fumarate hydratase class I, aerobic	4.2.1.2	fumA	fumarase, class I, homodimeric (EC 4.2.1.2)	4.2.1.2	CDS	"Fumarate hydratase class I, aerobic"	4.2.1.2		base_ec	base_ec	base_ec	
mannose-6-phosphate isomerase, class I	5.3.1.8	manA	mannose-6-phosphate isomerase, type 1 (EC 5.3.1.8)	5.3.1.8	CDS	Mannose-6-phosphate isomerase	5.3.1.8		base_tigr	base_ec	base_ec	
protein ydgA		ydgA	Uncharacterized protein conserved in bacteria		CDS	Putative GTP-binding protein YdgA			gs-sh	0	0	
membrane-associated protein uidC		uidC	outer membrane porin, OprD family.		CDS	Glucuronide transport facilitator UidC			gs-sh	0	0	
conserved hypothetical protein			sugar (Glycoside-Pentoside-Hexuronide) transporter		CDS	Glucuronide transporter UidB			base_one HP	base_one HP	orth	
beta-glucuronidase	3.2.1.31	uidA	Beta-galactosidase/beta-glucuronidase	3.2.1.31	CDS	Beta-glucuronidase	3.2.1.31		base_ec	base_ec	base_ec	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	Transcriptional repressor UidR			gs-sh	0	0	
7-alpha-hydroxysteroid dehydrogenase	1.1.1.159	hdhA	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.159	CDS	7-alpha-hydroxysteroid dehydrogenase	1.1.1.159		base_ec	base_lit-s	base_ec	
periplasmic binding s and sugar binding domain of LacI family protein			transcriptional regulator, LacI family		CDS	Maltose regulon regulatory protein MalI (repressor for malXY)			pfam-sh	0	0	
PTS system, maltose and glucose-specific subfamily, IIC component domain protein			PTS system IIB component, Glc family (TC 4.A.1)/PTS system IIC component, Glc family (TC 4.A.1)		CDS	"PTS system, maltose and glucose-specific IIC component / PTS system, maltose and glucose-specific IIB component"	2.7.1.69, 2.7.1.69		0	tf_idf	0	
protein MalY	4.4.1.8	malY	Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities	4.4.1.8	CDS	Cystathionine beta-lyase (CBL) (Beta-cystathionase) (Cysteine lyase) / Maltose regulon modulator	4.4.1.8		base_ec	base_ec	base_ec	
adenosine deaminase	3.5.4.4	add	adenosine deaminase	3.5.4.4	CDS	Adenosine deaminase	3.5.4.4		base_lit-s	base_ec	base_ec	
conserved hypothetical protein			Predicted dehydrogenases and related proteins		CDS	L-arabinose 1-dehydrogenase	1.1.1.46		base_one HP	base_one HP	0	
modulating protein ymoA		ymoA	Haemolysin expression modulating protein.		CDS	Cnu protein			gs-sh	0	0	
inner membrane protein ydgK		ydgK	Protein of unknown function (DUF2569).		CDS	Putative inner membrane protein			gs-sh	orth	0	
electron transport complex, RnfABCDGE type, A subunit			electron transport complex, RnfABCDGE type, A subunit		CDS	Electron transport complex protein RnfA			base_lit-s	orth	orth	
electron transport complex, RnfABCDGE type, B subunit			electron transport complex, RnfABCDGE type, B subunit		CDS	Electron transport complex protein RnfB			base_lit-s	0	0	
electron transport complex, RnfABCDGE type, C subunit			electron transport complex, RnfABCDGE type, C subunit		CDS	Electron transport complex protein RnfC			base_lit-s	map	gs-sh	
electron transport complex, RnfABCDGE type, D subunit			electron transport complex, RnfABCDGE type, D subunit		CDS	Electron transport complex protein RnfD			base_lit-s	0	0	
electron transport complex, RnfABCDGE type, G subunit			electron transport complex, RnfABCDGE type, G subunit		CDS	Electron transport complex protein RnfG			base_lit-s	map	gs-sh	
electron transport complex, RnfABCDGE type, E subunit			electron transport complex, RnfABCDGE type, E subunit		CDS	Electron transport complex protein RnfE			base_lit-s	orth	orth	
endonuclease III	4.2.99.18	nth	DNA-(apurinic or apyrimidinic site) lyase/endonuclease III	4.2.99.18,4.2.99.18, 3.2.2.-	CDS	Endonuclease III	4.2.99.18		base_tigr	base_ec	map	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
H+ symporter) family protein			amino acid/peptide transporter (Peptide:H+ symporter), bacterial		CDS	Di/tripeptide permease DtpA			base_tigr	0	0	
glutathione S-transferase	2.5.1.18	gst	Glutathione S-transferase	2.5.1.18	CDS	Glutathione S-transferase	2.5.1.18		base_ec	base_ec	base_lit-s	
pyridoxal kinase	2.7.1.35		pyridoxal kinase	2.7.1.35	CDS	Pyridoxal kinase	2.7.1.35		base_lit-s	base_ec	base_ec	
tyrosine--tRNA ligase	6.1.1.1	tyrS	tyrosyl-tRNA synthetase (EC 6.1.1.1)	6.1.1.1	CDS	Tyrosyl-tRNA synthetase	6.1.1.1		base_tigr	base_ec	base_ec	
pyridoxamine 5'-phosphate oxidase	1.4.3.5	pdxH	Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	1.4.3.5	CDS	Pyridoxamine 5'-phosphate oxidase	1.4.3.5		base_tigr	base_ec	base_ec	
membrane-bound lysozyme inhibitor of C-type lysozyme		mliC	Predicted periplasmic protein		CDS	Membrane-bound lysozyme inhibitor of c-type lysozyme			gs-sh	lit-s	map	
anhydro-N-acetylmuramic acid kinase	2.7.1.n1	anmK	Predicted molecular chaperone distantly related to HSP70-fold metalloproteases		CDS	Anhydro-N-acetylmuramic acid kinase	2.7.1.-		gs-sh	lit-s	map	
outer membrane lipoprotein slyB		slyB	Outer membrane lipoprotein		CDS	Outer membrane lipoprotein pcp precursor			gs-sh	tf_idf	tf_idf	
transcriptional regulator slyA		slyA	Transcriptional regulators		CDS	Transcriptional regulator SlyA			gs-sh	lit-s	tf_idf	
conserved hypothetical protein			Protein of unknown function (DUF1656).		CDS	FIG00638170: hypothetical protein			base_one HP	base_one HP	lit-s	
efflux transporter, RND family, MFP subunit			RND family efflux transporter, MFP subunit		CDS	Putative membrane protein			base_tigr	0	0	
fusaric acid resistance family protein			Predicted membrane protein		CDS	FIG00639138: hypothetical protein			0	0	0	
superoxide dismutase [Cu-Zn]	1.15.1.1	sodC	Cu/Zn superoxide dismutase	1.15.1.1	CDS	Superoxide dismutase [Cu-Zn] precursor	1.15.1.1		base_ec	base_ec	base_ec	
oxidoreductase YdhF	1.-.-.-	ydhF	Predicted oxidoreductase		CDS	Putative aldo/keto reductase			gs-sh	gs-sh	orth	
			Predicted Fe-S protein		CDS				base_one miss	base_both miss	base_one miss	
HTH-type transcriptional repressor nemR		nemR	transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
N-ethylmaleimide reductase	1.-.-.-	nemA	NADH:flavin oxidoreductases, Old Yellow Enzyme family	1.-	CDS	N-ethylmaleimide reductase	1.-.-.-		gs-sh	base_lit-s	map	
lactoylglutathione lyase	4.4.1.5	gloA	lactoylglutathione lyase	4.4.1.5	CDS	Lactoylglutathione lyase	4.4.1.5		base_lit-s	base_ec	base_ec	
ribonuclease T	3.1.13.-	rnt	RNAse T (EC 3.1.13.-)	3.1.13.-	CDS	Ribonuclease T	3.1.13.-		base_tigr	lit-s	map	
helicase conserved C-terminal domain protein			ATP dependent helicase, Lhr family	3.6.4.-	CDS	Probable ATP-dependent helicase lhr	3.6.1.-		0	0	0	
monothiol glutaredoxin, Grx4 family		grxD	monothiol glutaredoxin, Grx4 family		CDS	hypothetical protein			base_lit-s	base_one HP	base_one HP	
putative hypothe						hypothetical protein			base_one miss	base_one HP	base_one HP	
conserved hypothetical protein			Cell wall-associated hydrolases (invasion-associated proteins)		CDS	Putative lipoprotein			base_one HP	base_one HP	0	
superoxide dismutase [Fe]	1.15.1.1	sodB	Superoxide dismutase	1.15.1.1	CDS	Superoxide dismutase [Fe]	1.15.1.1		base_ec	base_ec	base_ec	
inner membrane transport protein ydhP		ydhP	Arabinose efflux permease		CDS	Putative transport protein			gs-sh	orth	map	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	LysR-family transcriptional regulator YdhB			gs-sh	gs-sh	gs-sh	
periplasmic binding s and sugar binding domain of LacI family protein			transcriptional regulator, LacI family		CDS	Purine nucleotide synthesis repressor			pfam-sh	map	orth	
inner membrane transport protein ydhC		ydhC	drug resistance transporter, Bcr/CflA subfamily		CDS	Putative transport protein			gs-sh	orth	map	
cyclopropane-fatty-acyl-phospholipid synthase	2.1.1.79	cfa	cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79)	2.1.1.79	CDS	Cyclopropane-fatty-acyl-phospholipid synthase	2.1.1.79		base_ec	base_ec	base_ec	
riboflavin synthase, alpha subunit	2.5.1.9	ribE	riboflavin synthase alpha chain (EC 2.5.1.9)	2.5.1.9	CDS	Riboflavin synthase eubacterial/eukaryotic	2.5.1.9		base_tigr	base_ec	base_ec	
multidrug resistance protein mdtK		mdtK	putative efflux protein, MATE family		CDS	Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM			gs-sh	gs-sh	gs-sh	
pertactin family protein			Pertactin.		CDS	Possible enzyme			lit-s	0	0	
putative monooxygenase ydhR			Putative mono-oxygenase ydhR.		CDS	Protein ydhR precursor			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Acyl-CoA dehydrogenases			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00639295: hypothetical protein			lit-s	base_one HP	base_one HP	
prokaryotic cytochrome b561 family protein			Thiosulfate reductase cytochrome B subunit (membrane anchoring protein)		CDS	Thiosulfate reductase cytochrome B subunit			0	0	0	
4Fe-4S binding domain protein			Fe-S-cluster-containing hydrogenase components 1		CDS	Uncharacterized ferredoxin-like protein YdhX			0	0	0	
putative predicted oxidoreductase			hypothetical protein		CDS	FIG00637966: hypothetical protein			base_one HP	0	base_one HP	
aldehyde ferredoxin oxidoreductase, domains 2 & 3 family protein			Aldehyde:ferredoxin oxidoreductase		CDS	FIG00638117: hypothetical protein			0	0	0	
conserved hypothetical protein			Fe-S-cluster-containing hydrogenase components 1		CDS	"putative oxidoreductase, Fe-S subunit"			base_one HP	base_one HP	0	
conserved hypothetical protein			Protein of unknown function (DUF2767).		CDS	FIG01045422: hypothetical protein			base_one HP	base_one HP	lit-s	
pyruvate kinase	2.7.1.40	pyk	pyruvate kinase (EC 2.7.1.40)	2.7.1.40	CDS	Pyruvate kinase	2.7.1.40		base_tigr	base_ec	base_ec	
major outer membrane lipoprotein Lpp		lpp	Murein lipoprotein		CDS	major outer membrane lipoprotein			gs-sh	gs-sh	orth	
putative L,D-transpeptidase YnhG			Uncharacterized protein conserved in bacteria		CDS	"L,D-transpeptidase YnhG"			0	lit-s	0	
cysteine desulfuration protein sufE		sufE	Cysteine desulfuration protein SufE		CDS	Sulfur acceptor protein SufE for iron-sulfur cluster assembly			lit-s	map	pfam-sh	
cysteine desulfurase	4.4.1.16	sufS	cysteine desulfurase/L-selenocysteine selenide-lyase (L-alanine-forming)	4.4.1.16, 2.8.1.7,2.8.1.7, 4.4.1.16	CDS	"Cysteine desulfurase, SufS subfamily; Selenocysteine lyase( EC:4.4.1.16 ) subunit"	2.8.1.7		base_ec-d	base_ec-d	base_ec-d	
feS assembly protein SufD		sufD	Iron-regulated ABC transporter permease protein SufD		CDS	Iron-sulfur cluster assembly protein SufD			base_tigr	gs-sh	gs-sh	
feS assembly ATPase SufC		sufC	Iron-regulated ABC transporter ATPase subunit SufC		CDS	Iron-sulfur cluster assembly ATPase protein SufC			base_tigr	gs-sh	gs-sh	
feS assembly protein SufB		sufB	Iron-regulated ABC transporter membrane component SufB		CDS	Iron-sulfur cluster assembly protein SufB			base_tigr	gs-sh	gs-sh	
feS assembly scaffold SufA		sufA	FeS assembly scaffold SufA		CDS	Iron binding protein SufA for iron-sulfur cluster assembly			lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00639040: hypothetical protein			lit-s	base_one HP	base_one HP	
esterase YdiI	3.1.-.-	ydiI	uncharacterized domain 1		CDS	FIG002649: ydiI hotdog fold superfamily			gs-sh	gs-sh	gs-sh	
4Fe-4S dicluster domain protein			FAD/FMN-containing dehydrogenases		CDS	"Fe-S protein, homolog of lactate dehydrogenase SO1521"			0	0	0	
conserved hypothetical protein			Predicted permease		CDS	Putative membrane protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Domain of unknown function (DUF1870).		CDS	FIG00638201: hypothetical protein			base_one HP	base_one HP	lit-s	
inner membrane transport protein ydiM		ydiM	Sugar phosphate permease		CDS	Putative transport system permease protein			gs-sh	orth	map	
inner membrane transport protein ydiN		ydiN	Sugar phosphate permease		CDS	FIG00638001: hypothetical protein			gs-sh	0	0	
shikimate / quinate 5-dehydrogenase family protein			shikimate dehydrogenase	1.1.1.282,1.1.1.25	CDS	Shikimate/quinate 5-dehydrogenase I beta	1.1.1.282		0	0	base_ec-d	
3-dehydroquinate dehydratase	4.2.1.10	aroD	3-dehydroquinate dehydratase (EC 4.2.1.10)	4.2.1.10	CDS	3-dehydroquinate dehydratase I	4.2.1.10		base_ec	base_ec	base_ec	
conserved hypothetical protein			propionate CoA-transferase	2.8.3.1	CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
crotonobetainyl-CoA dehydrogenase	1.3.99.-	caiA	Acyl-CoA dehydrogenases		CDS	Acyl-CoA dehydrogenase	1.3.99.3		gs-sh	gs-sh	map	
bacterial regulatory helix-turn-helix s, AraC family protein			transcriptional regulator, AraC family		CDS	"Transcriptional regulator, AraC family"			pfam-sh	pfam-sh	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638426: hypothetical protein			lit-s	base_one HP	base_one HP	
electron transfer flavodomain protein			electron transfer flavoprotein beta subunit		CDS	"Electron transfer flavoprotein, beta subunit"			0	0	lit-s	
electron transfer flavodomain protein			electron transfer flavoprotein alpha subunit apoprotein		CDS	"Electron transfer flavoprotein, alpha subunit"			0	0	tf_idf	
FAD binding domain protein			Dehydrogenases (flavoproteins)	1.5.5.-	CDS	flavoprotein			0	0	0	
putative ferredoxin			Ferredoxin-like protein		CDS	Ferredoxin-like protein FixX			orth	map	gs-sh	
short-chain-fatty-acid--CoA ligase	6.2.1.-	fadK	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		gs-sh	0	0	
phosphoenolpyruvate synthase	2.7.9.2	ppsA	phosphoenolpyruvate synthase (EC 2.7.9.2)	2.7.9.2	CDS	Phosphoenolpyruvate synthase	2.7.9.2		base_tigr	base_ec	base_ec	
putative phosphotransferase ydiA			Uncharacterized protein conserved in bacteria		CDS	FIG137360: hypothetical protein			gs-sh	0	lit-s	
3-deoxy-7-phosphoheptulonate synthase	2.5.1.54		3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54)	2.5.1.54	CDS	2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha	2.5.1.54		base_tigr	base_ec	base_ec	
hemin uptake hemP family protein			Hemin uptake protein		CDS	Hemin uptake protein HemP			gs-sh	lit-s	map	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Selenoprotein O and cysteine-containing homologs			base_one HP	base_one HP	0	
cyclic di-GMP regulator CdgR		cdgR	FOG: EAL domain		CDS	FIG00638687: hypothetical protein			gs-sh	0	0	
nlpC/P60 family protein			Cell wall-associated hydrolases (invasion-associated proteins)		CDS	Probable lipoprotein nlpC precursor			gs-sh	gs-sh	gs-sh	
vitamin B12 import ATP-binding protein BtuD	3.6.3.33	btuD	ABC-type cobalamin transport system, ATPase component	3.6.3.33	CDS	"Vitamin B12 ABC transporter, ATPase component BtuD"			base_ec	0	0	
glutathione peroxidase family protein			Glutathione peroxidase	1.11.1.9	CDS	Glutathione peroxidase	1.11.1.9		lit-s	lit-s	base_lit-s	
vitamin B12 import system permease protein BtuC		btuC	ABC-type cobalamin transport system, permease component		CDS	"Vitamin B12 ABC transporter, permease component BtuC"			gs-sh	gs-sh	gs-sh	
integration host factor, alpha subunit		ihfA	integration host factor, alpha subunit		CDS	Integration host factor alpha subunit			base_lit-s	lit-s	lit-s	
phenylalanine--tRNA ligase, beta subunit	6.1.1.20	pheT	phenylalanyl-tRNA synthetase beta subunit (EC 6.1.1.20)	6.1.1.20	CDS	Phenylalanyl-tRNA synthetase beta chain	6.1.1.20		base_tigr	base_ec	base_ec	
phenylalanine--tRNA ligase, alpha subunit	6.1.1.20	pheS	phenylalanyl-tRNA synthetase, alpha subunit (EC 6.1.1.20)	6.1.1.20	CDS	Phenylalanyl-tRNA synthetase alpha chain	6.1.1.20		base_tigr	base_ec	base_ec	
ribosomal protein L20		rplT	LSU ribosomal protein L20P		CDS	LSU ribosomal protein L20p			base_tigr	map	lit-s	
ribosomal protein L35		rpmI	LSU ribosomal protein L35P		CDS	LSU ribosomal protein L35p			base_tigr	map	lit-s	
									base_both miss	base_both miss	base_both miss	
translation initiation factor IF-3		infC	bacterial translation initiation factor 3 (bIF-3)		CDS	Translation initiation factor 3			base_tigr	gs-sh	map	
threonine--tRNA ligase	6.1.1.3	thrS	threonyl-tRNA synthetase	6.1.1.3	CDS	Threonyl-tRNA synthetase	6.1.1.3		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS				lit-s	base_one HP	base_one HP	
shET2 enterotoxin, N-terminal region family protein			hypothetical protein		CDS	FIG00638086: hypothetical protein			base_one HP	0	base_one HP	
conserved hypothetical protein			Putative salt-induced outer membrane protein		CDS	Putative outer membrane protein			base_one HP	base_one HP	orth	
6-phosphofructokinase isozyme 2	2.7.1.11	pfkB	6-phosphofructokinase (EC 2.7.1.11)	2.7.1.11	CDS	6-phosphofructokinase class II	2.7.1.11		base_ec	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF2622).		CDS	FIG00637864: hypothetical protein			base_one HP	base_one HP	lit-s	
phosphotransferase enzyme family protein			Fructosamine-3-kinase		CDS	Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation			0	0	0	
yniB-like family protein			YniB-like protein.		CDS	Putative membrane protein			lit-s	0	0	
phosphatase YniC	3.1.3.-	yniC	haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED		CDS	2-deoxyglucose-6-phosphate hydrolase YniC			gs-sh	0	0	
inner membrane protein ydjM		ydjM	Predicted membrane-bound metal-dependent hydrolases		CDS	FIG00638530: hypothetical protein			gs-sh	0	0	
sodium:dicarboxylate symporter family protein			Predicted Na+/dicarboxylate symporter		CDS	L-cystine uptake protein TcyP			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638395: hypothetical protein			lit-s	base_one HP	base_one HP	
cell division activator CedA		cedA	cell division activator CedA		CDS	Cell division activator cedA			base_lit-s	lit-s	lit-s	
catalase HPII	1.11.1.6	katE	Catalase	1.11.1.6	CDS	Catalase	1.11.1.6		base_ec	base_ec	base_lit-s	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
ydjC-like family protein			Uncharacterized protein conserved in bacteria		CDS	Cellobiose phosphotransferase system YdjC-like protein			gs-sh	0	0	
6-phospho-beta-glucosidase	3.2.1.86	chbF	6-phospho-beta-glucosidase (EC 3.2.1.86)	3.2.1.86	CDS	Chitobiose-specific 6-phospho-beta-glucosidase ChbF	3.2.1.86		base_ec	base_ec	base_ec	
HTH-type transcriptional regulator ChbR		chbR	transcriptional regulator, AraC family		CDS	"Chitobiose-specific regulator ChbR, AraC family"			gs-sh	gs-sh	pfam-sh	
N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component	2.7.1.-	chbA	PTS system N,N'-diacetylchitobiose-specific IIA component, Lac family (TC 4.A.3.2.1)	2.7.1.69	CDS	PEP-dependent phosphotransferase enzyme III			gs-sh	0	0	
PTS system, cellobiose-specific IIC component	2.7.1.69	celB	PTS system N,N'-diacetylchitobiose-specific IIC component, Lac family (TC 4.A.3.2.1)		CDS	"PEP-dependent phosphotransferase enzyme II for cellobiose, arbutin, and salicin"			gs-sh	orth	map	
N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB component	2.7.1.69	chbB	PTS system N,N'-diacetylchitobiose-specific IIB component, Lac family (TC 4.A.3.2.1)	2.7.1.69	CDS	"PTS system, chitobiose-specific IIB component"	2.7.1.69		base_ec	base_ec	base_ec	
smpA / OmlA family protein			Beta-barrel assembly machine subunit BamE		CDS	Osmotically inducible lipoprotein E precursor			gs-sh	0	0	
NH(3)-dependent NAD(+) synthetase	6.3.1.5	nadE	NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)	6.3.1.5	CDS	NAD synthetase	6.3.1.5		base_ec	base_ec	base_ec	
protein ves		ves	Uncharacterized protein conserved in bacteria		CDS	Conserved hypothetical protein (perhaps related to histidine degradation)			gs-sh	0	0	
excinuclease cho	3.1.25.-	cho	Excinuclease Cho	3.1.25.-	CDS	Excinuclease cho (excinuclease ABC alternative C subunit)			lit-s	gs-sh	gs-sh	
spheroplast protein Y		spy	P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein		CDS	Periplasmic protein related to spheroblast formation			gs-sh	orth	map	
succinylglutamate desuccinylase	3.5.1.96	astE	succinylglutamate desuccinylase (EC 3.5.1.96)	3.5.1.96	CDS	Succinylglutamate desuccinylase	3.5.1.96		base_tigr	base_ec	base_ec	
succinylarginine dihydrolase	3.5.3.23	astB	succinylarginine dihydrolase (EC 3.5.3.23)	3.5.3.23	CDS	Succinylarginine dihydrolase	3.5.3.23		base_tigr	base_ec	base_ec	
succinylglutamic semialdehyde dehydrogenase	1.2.1.71	astD	succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)	1.2.1.71	CDS	Succinylglutamic semialdehyde dehydrogenase	1.2.1.71		base_tigr	base_ec	base_ec	
arginine N-succinyltransferase	2.3.1.109	astA	arginine succinyltransferase (EC 2.3.1.109)	2.3.1.109	CDS	Arginine N-succinyltransferase	2.3.1.109		base_ec	base_ec	base_ec	
succinylornithine transaminase family protein	2.6.1.81	astC	acetylornithine and succinylornithine transaminases/succinylornithine transaminase family	2.6.1.81	CDS	Succinylornithine transaminase	2.6.1.81		base_ec	base_ec	base_ec	
conserved hypothetical protein						hypothetical protein			base_one HP	lit-s	base_one HP	
exodeoxyribonuclease III	3.1.11.2	xth	exodeoxyribonuclease III	3.1.11.2	CDS	Exodeoxyribonuclease III	3.1.11.2		base_lit-s	base_ec	base_ec	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	DedA family inner membrane protein YdjX			base_one HP	base_one HP	gs-sh	
conserved hypothetical protein			hypothetical protein		CDS	Hypothetical protein YdjY			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Alkaline phosphatase like protein			base_one HP	base_one HP	0	
carboxymuconolactone decarboxylase family protein			Uncharacterized conserved protein		CDS	FIG00922551: hypothetical protein			0	0	lit-s	
protein ynjB		ynjB	ABC-type uncharacterized transport system, periplasmic component		CDS	"ABC transporter, periplasmic substrate-binding protein YnjB"			gs-sh	0	0	
inner membrane ABC transporter permease protein ynjC		ynjC	ABC-type uncharacterized transport system, permease component		CDS	"ABC transporter, permease protein YnjC"			gs-sh	tf_idf	map	
ABC transporter family protein			ABC-type uncharacterized transport system, ATPase component		CDS	"ABC transporter, ATP-binding protein YnjD"			0	tf_idf	0	
thiosulfate sulfurtransferase YnjE	2.8.1.1	ynjE	thiosulfate sulfurtransferase	2.8.1.1, 2.8.1.2,2.8.1.1	CDS	Putative thiosulfate sulfurtransferase ynjE	2.8.1.1		base_ec-d	base_ec	base_ec-d	
inner membrane protein YnjF		ynjF	Phosphatidylglycerophosphate synthase		CDS	Putative phosphatidylglycerophosphate synthase			gs-sh	gs-sh	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF1496).		CDS	FIG00638396: hypothetical protein			base_one HP	base_one HP	lit-s	
CTP pyrophosphohydrolase	3.6.1.-	nudG	ADP-ribose pyrophosphatase	3.6.1.-	CDS	5-methyl-dCTP pyrophosphohydrolase	3.6.1.-		gs-sh	gs-sh	gs-sh	
NADP-specific glutamate dehydrogenase	1.4.1.4	gdhA	glutamate dehydrogenase (NADP) (EC 1.4.1.4)	1.4.1.4	CDS	NADP-specific glutamate dehydrogenase	1.4.1.4		base_ec	base_lit-s	base_ec	
inner membrane protein ynjI		ynjI	Protein of unknown function (DUF1266).		CDS	FIG00638567: hypothetical protein			gs-sh	0	lit-s	
DNA topoisomerase 3	5.99.1.2	topB	DNA topoisomerase III, bacteria and conjugative plasmid	5.99.1.2	CDS	DNA topoisomerase III	5.99.1.2		base_ec	base_ec	base_ec	
selenide, water dikinase	2.7.9.3	selD	selenophosphate synthase (EC 2.7.9.3)	2.7.9.3	CDS	"Selenide,water dikinase"	2.7.9.3		base_tigr	base_ec	base_ec	
putative NAD(P)H nitroreductase ydjA			Nitroreductase		CDS	Protein ydjA			gs-sh	gs-sh	gs-sh	
signal peptide peptidase SppA, 67K type	3.4.-.-	sppA	signal peptide peptidase SppA, 67K type	3.4.21.-	CDS	Protease IV	3.4.21.-		base_lit-s	gs-sh	orth	
L-asparaginase 1	3.5.1.1	ansA	L-asparaginases, type I	3.5.1.1	CDS	"L-asparaginase I, cytoplasmic"	3.5.1.1		base_ec	base_ec	base_ec	
isochorismatase family protein			Amidases related to nicotinamidase	3.5.1.19, 3.5.1.-	CDS	Nicotinamidase	3.5.1.19		0	0	0	
inner membrane metabolite transport protein ydjE		ydjE	Sugar phosphate permease		CDS	"Putative transport protein YdjK, MFS superfamily"			gs-sh	0	0	
conserved hypothetical protein			transcriptional regulator, DeoR family		CDS	Putative HTH-type transcriptional regulator YdjF			base_one HP	base_one HP	0	
aldo/keto reductase family protein			Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)		CDS	Hypothetical oxidoreductase YdjG	1.-.-.-		0	0	0	
conserved hypothetical protein			Sugar kinases, ribokinase family		CDS	Uncharacterized sugar kinase YdjH			base_one HP	base_one HP	0	
ketose-bisphosphate aldolase family protein			fructose-bisphosphate aldolase	4.1.2.13	CDS	Putative aldolase YdjI			base_tigr	0	0	
sorbitol dehydrogenase	1.1.1.14	gutB	Threonine dehydrogenase and related Zn-dependent dehydrogenases		CDS	Hypothetical zinc-type alcohol dehydrogenase-like protein YdjJ			gs-sh	orth	map	
inner membrane metabolite transport protein ydjE		ydjE	Sugar phosphate permease		CDS	"Putative transport protein YdjK, MFS superfamily"			gs-sh	0	0	
zinc-binding dehydrogenase family protein			Threonine dehydrogenase and related Zn-dependent dehydrogenases		CDS	Putative oxidoreductase YdjL			0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Uncharacterized protein YeaC			base_one HP	base_one HP	0	
peptide methionine sulfoxide reductase MsrB	1.8.4.12	msrB	methionine-R-sulfoxide reductase	1.8.4.12	CDS	Peptide methionine sulfoxide reductase MsrB	1.8.4.12		base_ec	base_ec	base_ec	
glyceraldehyde-3-phosphate dehydrogenase, type I	1.2.1.-	gap	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (EC 1.2.1.12)	1.2.1.12	CDS	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase	1.2.1.12		base_tigr	gs-sh	base_ec	
putative glucose-6-phosphate 1-epimerase			Uncharacterized enzymes related to aldose 1-epimerase	5.1.3.15	CDS	Aldose 1-epimerase family protein YeaD			0	0	0	
aldo/keto reductase family protein			Aldo/keto reductases, related to diketogulonate reductase		CDS	"Putative oxidoreductase YeaE, aldo/keto reductase family"			0	0	0	
mltA-interacting protein		mipA	Outer membrane protein V		CDS	MltA-interacting protein MipA			gs-sh	gs-sh	map	
prkA serine kinase C-terminal domain protein			putative serine protein kinase, PrkA		CDS	"Serine protein kinase (prkA protein), P-loop containing"			lit-s	gs-sh	gs-sh	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	UPF0229 protein YeaH			base_one HP	base_one HP	0	
inner membrane protein YeaI		yeaI	diguanylate cyclase (GGDEF) domain		CDS	Inner membrane protein YeaI			gs-sh	lit-s	orth	
diguanylate cyclase domain protein			diguanylate cyclase (GGDEF) domain		CDS	Putative two-component response regulator and GGDEF family protein YeaJ			base_tigr	map	pfam-sh	
ybaK / prolyl-tRNA synthetases associated domain protein			Uncharacterized conserved protein		CDS	Putative uncharacterized protein YeaK			gs-sh	0	0	
bacterial regulatory helix-turn-helix s, AraC family protein			transcriptional regulator, AraC family		CDS	"Transcriptional regulator, AraC family"			pfam-sh	pfam-sh	lit-s	
conserved hypothetical protein			Predicted membrane protein		CDS	Putative inner membrane protein			base_one HP	base_one HP	0	
cyanate transporter family protein			cyanate transporter		CDS	FIG00638318: hypothetical protein			base_tigr	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00638254: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Putative hemolysin		CDS	FIG00638802: hypothetical protein			base_one HP	base_one HP	0	
putative diguanylate cyclase YeaP			diguanylate cyclase with GAF sensor	2.7.7.65	CDS	FIG00638308: hypothetical protein			0	0	0	
transglycosylase associated family protein			Predicted membrane protein		CDS	UPF0410 protein YeaQ			0	0	0	
protein yoaG		yoaG	Domain of unknown function (DUF1869).		CDS	Putative cytoplasmic protein			gs-sh	orth	0	
conserved hypothetical protein			Uncharacterized protein/domain, possibly involved in tellurite resistance		CDS	Putative cytoplasmic protein			base_one HP	base_one HP	0	
leucine efflux protein		leuE	Putative threonine efflux protein		CDS	Putative transport protein			gs-sh	0	0	
HTH-type transcriptional regulator DmlR		dmlR	transcriptional regulator, LysR family		CDS	Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme			gs-sh	0	0	
tartrate dehydrogenase	1.1.1.93		tartrate dehydrogenase	1.1.1.83, 4.1.1.73, 1.1.1.93	CDS	Tartrate dehydrogenase / Tartrate decarboxylase / D-malic enzyme	1.1.1.93, 4.1.1.73, 1.1.1.83		base_lit-s	base_ec-d	base_ec-d	
transporter, betaine/carnitine/choline transporter family protein			choline/carnitine/betaine transport		CDS	Choline-glycine betaine transporter			base_tigr	0	0	
rieske [2Fe-2S] domain protein			Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit		CDS	Rieske (2Fe-2S) domain protein			0	lit-s	0	
2Fe-2S iron-sulfur cluster binding domain protein			Flavodoxin reductases (ferredoxin-NADPH reductases) family 1		CDS	ferredoxin			0	0	0	
ribonuclease D	3.1.13.5	rnd	ribonuclease D	3.1.13.5	CDS	Ribonuclease D	3.1.26.3		base_lit-s	base_ec-d	base_ec-d	
long-chain-fatty-acid--CoA ligase	6.2.1.3	fadD				Long-chain-fatty-acid--CoA ligase	6.2.1.3		base_one miss	base_ec	base_one miss	
outer membrane lipo, Slp family protein			outer membrane lipoprotein, Slp family		CDS	Starvation lipoprotein Slp paralog			base_tigr	0	0	
conserved hypothetical protein			universal bacterial protein YeaZ		CDS	"Inactive homolog of metal-dependent proteases, putative molecular chaperone"			base_one HP	base_one HP	0	
DEAD/DEAH box helicase family protein			Rad3-related DNA helicases		CDS	DinG family ATP-dependent helicase YoaA			0	0	gs-sh	
endoribonuclease L-PSP family protein			Putative translation initiation inhibitor, yjgF family		CDS	Putative translation initiation inhibitor YoaB			gs-sh	0	0	
putative cytoplasmic protein			Domain of unknown function (DUF1889).		CDS	FIG00639292: hypothetical protein			0	0	lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG01046632: hypothetical protein			base_one HP	base_one HP	lit-s	
aminodeoxychorismate synthase, component I	2.6.1.85	pabB	aminodeoxychorismate synthase, subunit I (EC 2.6.1.85)	2.6.1.85	CDS	"Para-aminobenzoate synthase, aminase component"	2.6.1.85		base_tigr	base_ec	base_ec	
NUDIX domain protein			NTP pyrophosphohydrolases including oxidative damage repair enzymes		CDS	Hypothetical nudix hydrolase YeaB			0	0	0	
L-serine ammonia-lyase	4.3.1.17		L-serine dehydratase, iron-sulfur-dependent, single chain form	4.3.1.17	CDS	L-serine dehydratase 1	4.3.1.17		base_tigr	base_ec	base_ec	
putative cyclic-di-GMP phosphodiesterase AdrB			FOG: EAL domain		CDS	Rtn protein			0	0	0	
conserved hypothetical protein			Membrane protein TerC, possibly involved in tellurium resistance		CDS	Magnesium and cobalt efflux protein CorC			base_one HP	base_one HP	gs-sh	
PTS system mannose-specific EIIAB component	2.7.1.69	manX	PTS system D-mannose-specific IIA component, Man family (TC 4.A.6.1.1)/PTS system D-mannose-specific IIB component, Man family (TC 4.A.6.1.1)	2.7.1.69	CDS	"PTS system, mannose-specific IIA component / PTS system, mannose-specific IIB component"	2.7.1.69, 2.7.1.69		base_ec	base_ec-d	base_ec-d	
PTS system, mannose/fructose/sorbose , IIC component family protein			PTS system D-mannose-specific IIC component, Man family (TC 4.A.6.1.1)		CDS	"PTS system, mannose-specific IIC component"	2.7.1.69		base_tigr	0	0	
PTS system, mannose/fructose/sorbose , IID component family protein			PTS system D-mannose-specific IID component, Man family (TC 4.A.6.1.1)		CDS	"PTS system, mannose-specific IID component"	2.7.1.69		base_tigr	0	0	
						FIG00639732: hypothetical protein			base_both miss	base_one miss	base_one miss	
conserved hypothetical protein			Predicted membrane protein		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
ribosomal RNA large subunit methyltransferase A	2.1.1.187	rlmA	23S rRNA m(1)G-745 methyltransferase	2.1.1.187,2.1.1.51	CDS	Ribosomal RNA large subunit methyltransferase A	2.1.1.51		base_ec-d	base_ec-d	base_ec-d	
conserved hypothetical protein			Predicted membrane protein		CDS	Putative membrane protein			base_one HP	base_one HP	lit-s	
									base_both miss	base_both miss	base_both miss	
cold shock-like protein CspC		cspC	cold-shock DNA-binding protein family		CDS	Cold shock protein CspC			gs-sh	gs-sh	gs-sh	
yebO-like family protein			YebO-like protein.		CDS	FIG01068233: hypothetical protein			lit-s	0	0	
yobH-like family protein			YobH-like protein.		CDS	putative exported protein			lit-s	0	0	
pectin degradation repressor protein kdgR		kdgR	transcriptional regulator, IclR family		CDS	"Transcriptional regulator KdgR, KDG operon repressor"			gs-sh	0	0	
sugar (and other) transporter family protein			Arabinose efflux permease		CDS	Putative transport protein			0	0	0	
protease HtpX	3.4.24.-	htpX	Zn-dependent protease with chaperone function	3.4.24.-	CDS	Probable protease HtpX	3.4.24.-		gs-sh	lit-s	gs-sh	
tail-specific protease	3.4.21.102	prc	C-terminal processing peptidase-1. Serine peptidase. MEROPS family S41A	3.4.21.102	CDS	Tail-specific protease precursor	3.4.21.102		base_ec	base_ec	base_ec	
proP effector		proQ	Activator of osmoprotectant transporter ProP		CDS	ProQ: influences osmotic activation of compatible solute ProP			gs-sh	gs-sh	gs-sh	
protein yebR		yebR	GAF domain-containing protein		CDS	"Free methionine-(R)-sulfoxide reductase, contains GAF domain"			gs-sh	map	pfam-sh	
inner membrane protein yebS		yebS	integral membrane protein, PqiA family		CDS	Paraquat-inducible protein A			gs-sh	orth	map	
conserved hypothetical protein			Paraquat-inducible protein B		CDS	Paraquat-inducible protein B			base_one HP	base_one HP	base_lit-s	
ribosomal RNA small subunit methyltransferase F	2.1.1.178	rsmF	16S rRNA m(5)C-1407 methyltransferase (EC 2.1.1.178)	2.1.1.178	CDS	Ribosomal RNA small subunit methyltransferase F	2.1.1.-		base_ec	lit-s	map	
conserved hypothetical protein			Protein of unknown function (DUF1480).		CDS	FIG01045311: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF1482).		CDS	FIG00638765: hypothetical protein			base_one HP	base_one HP	lit-s	
serine/threonine-protein phosphatase 1	3.1.3.16	pphA	Diadenosine tetraphosphatase and related serine/threonine protein phosphatases	3.1.3.16	CDS	Ren protein			base_ec	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2511).		CDS	Putative periplasmic or exported protein			base_one HP	base_one HP	0	
inner membrane protein YebZ		yebZ	Putative copper export protein		CDS	Copper resistance protein D			gs-sh	orth	map	
protein YobA		yobA	Uncharacterized protein, homolog of Cu resistance protein CopC		CDS	Copper resistance protein C precursor			gs-sh	0	0	
DNA polymerase III subunit theta	2.7.7.7	holE	DNA polymerase III, theta subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III theta subunit	2.7.7.7		base_ec	base_ec	base_ec	
carbon-nitrogen hydrolase family protein			Predicted amidohydrolase		CDS	Putative amidohydrolase			0	0	lit-s	
protease 2	3.4.21.83	ptrB	oligopeptidase B (EC:3.4.21.83). Serine peptidase. MEROPS family S09A	3.4.21.83	CDS	Protease II	3.4.21.83		base_ec	base_ec	base_ec	
exodeoxyribonuclease 10	3.1.11.-	exoX	Exodeoxyribonuclease X (EC 3.1.11.-)	3.1.11.-	CDS	Exodeoxyribonuclease X	3.1.11.-		gs-sh	gs-sh	lit-s	
inner membrane protein yebE		yebE	Uncharacterized protein conserved in bacteria		CDS	FIG004088: inner membrane protein YebE			gs-sh	lit-s	0	
protein yebF		yebF	YebF-like protein.		CDS	Putative exported protein			gs-sh	0	0	
yebG family protein			Uncharacterized protein conserved in bacteria		CDS	"DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS"			gs-sh	orth	0	
phosphoribosylglycinamide formyltransferase 2	2.1.2.-	purT	formate-dependent phosphoribosylglycinamide formyltransferase	2.1.2.2,6.3.4.-	CDS	Phosphoribosylglycinamide formyltransferase 2	2.1.2.-		base_tigr	lit-s	map	
KHG/KDPG aldolase	4.1.2.14	eda	2-keto-3-deoxy-phosphogluconate aldolase	4.1.2.14, 4.1.3.16,4.1.2.14	CDS	4-hydroxy-2-oxoglutarate aldolase @ 2-dehydro-3-deoxyphosphogluconate aldolase	4.1.3.16, 4.1.2.14		base_ec-d	base_ec-d	base_ec-d	
phosphogluconate dehydratase	4.2.1.12	edd	6-phosphogluconate dehydratase (EC 4.2.1.12)	4.2.1.12	CDS	Phosphogluconate dehydratase	4.2.1.12		base_tigr	base_ec	base_ec	
glucose-6-phosphate dehydrogenase	1.1.1.49	zwf	glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	1.1.1.49	CDS	Glucose-6-phosphate 1-dehydrogenase	1.1.1.49		base_tigr	base_ec	base_ec	
helix-turn-helix domain, rpiR family protein			transcriptional regulator, RpiR family		CDS	"Phosphogluconate repressor HexR, RpiR family"			gs-sh	gs-sh	gs-sh	
pyruvate kinase	2.7.1.40	pyk	pyruvate kinase	2.7.1.40	CDS	Pyruvate kinase	2.7.1.40		base_lit-s	base_ec	base_ec	
lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	2.3.1.-	msbB	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	2.3.1.-	CDS	Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase	2.3.1.-		base_lit-s	lit-s	lit-s	
lysM domain protein			Membrane proteins related to metalloendopeptidases		CDS	"Cell wall endopeptidase, family M23/M37"			gs-sh	0	0	
high-affinity zinc uptake system protein znuA		znuA	ABC-type Zn2+ transport system, periplasmic component/surface adhesin		CDS	"Zinc ABC transporter, periplasmic-binding protein ZnuA"			gs-sh	gs-sh	gs-sh	
ABC transporter family protein			ABC-type Mn/Zn transport systems, ATPase component	3.6.3.-	CDS	"Zinc ABC transporter, ATP-binding protein ZnuC"			0	0	gs-sh	
high-affinity zinc uptake system membrane protein znuB		znuB	ABC-type Mn2+/Zn2+ transport systems, permease components		CDS	"Zinc ABC transporter, inner membrane permease protein ZnuB"			gs-sh	gs-sh	gs-sh	
holliday junction DNA helicase RuvB	3.6.4.12	ruvB	Holliday junction DNA helicase subunit RuvB	3.6.4.12	CDS	Holliday junction DNA helicase RuvB			base_tigr	lit-s	lit-s	
holliday junction DNA helicase RuvA	3.6.4.12	ruvA	Holliday junction DNA helicase subunit RuvA	3.6.4.12	CDS	Holliday junction DNA helicase RuvA			base_tigr	lit-s	lit-s	
conserved hypothetical protein			Orthopoxvirus protein of unknown function (DUF830).		CDS	FIG00637868: hypothetical protein			base_one HP	base_one HP	0	
crossover junction endodeoxyribonuclease RuvC	3.1.22.4	ruvC	Holliday junction endonuclease RuvC (EC 3.1.22.4)	3.1.22.4	CDS	Crossover junction endodeoxyribonuclease RuvC	3.1.22.4		base_tigr	base_ec	base_ec	
DNA-binding regulatory , YebC/PmpR family protein			DNA-binding regulatory protein, YebC/PmpR family		CDS	FIG000859: hypothetical protein YebC			base_tigr	0	0	
dihydroneopterin triphosphate pyrophosphatase	3.6.1.-	nudB	NTP pyrophosphohydrolases including oxidative damage repair enzymes	3.6.1.-	CDS	Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB)			gs-sh	gs-sh	gs-sh	
aspartate--tRNA ligase	6.1.1.-	aspS	aspartyl-tRNA synthetase, bacterial type	6.1.1.12	CDS	Aspartyl-tRNA synthetase	6.1.1.12		base_tigr	gs-sh	base_ec	
isochorismatase family protein			Amidases related to nicotinamidase		CDS	Nicotinamidase/isochorismatase family protein			0	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG003003: hypothetical protein			base_one HP	base_one HP	lit-s	
inner membrane protein yecN		yecN	Uncharacterized relative of glutathione S-transferase, MAPEG superfamily		CDS	FIG01046209: hypothetical protein			gs-sh	0	0	
tRNA (cmo5U34)-methyltransferase	2.1.1.-	cmoA	methyltransferase, putative	2.1.1.-	CDS	tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase			base_tigr	gs-sh	gs-sh	
tRNA (mo5U34)-methyltransferase	2.1.1.-	cmoB	methyltransferase, putative	2.1.1.-	CDS	tRNA (5-methoxyuridine) 34 synthase			base_tigr	gs-sh	gs-sh	
trimethylamine-N-oxide reductase 2	1.7.2.3	torZ	molybdopterin guanine dinucleotide-containing S/N-oxide reductases	1.7.2.3	CDS	Trimethylamine-N-oxide reductase	1.6.6.9		base_ec	base_ec-d	base_ec-d	
cytochrome c-type protein TorY		torY	Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit		CDS	Cytochrome c-type protein TorY			gs-sh	lit-s	map	
copper homeostasis protein CutC		cutC	Uncharacterized protein involved in copper resistance		CDS	Cytoplasmic copper homeostasis protein CutC			gs-sh	pfam-sh	map	
protein yecM		yecM	Uncharacterized protein conserved in bacteria		CDS	Protein yecM			gs-sh	lit-s	gs-sh	
arginine--tRNA ligase	6.1.1.19	argS	arginyl-tRNA synthetase (EC 6.1.1.19)	6.1.1.19	CDS	Arginyl-tRNA synthetase	6.1.1.19		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00639719: hypothetical protein			base_one HP	base_one HP	lit-s	
flagellar protein flhE		flhE	Flagellar protein FlhE.		CDS	Flagellar protein FlhE			lit-s	lit-s	lit-s	
flagellar biosynthesis protein FlhA		flhA	flagellar biosynthesis protein FlhA		CDS	Flagellar biosynthesis protein FlhA			base_lit-s	lit-s	lit-s	
flagellar biosynthetic protein FlhB		flhB	flagellar biosynthetic protein FlhB		CDS	Flagellar biosynthesis protein FlhB			base_lit-s	lit-s	lit-s	
protein phosphatase CheZ	3.1.3.-	cheZ	Chemotaxis protein		CDS	Chemotaxis response - phosphatase CheZ			gs-sh	pfam-sh	tf_idf	
chemotaxis protein CheY		cheY	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains		CDS	Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY			gs-sh	gs-sh	gs-sh	
cheB methylesterase family protein			Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	3.1.1.61	CDS	Chemotaxis response regulator protein-glutamate methylesterase CheB	3.1.1.61		gs-sh	gs-sh	base_ec	
chemotaxis protein methyltransferase	2.1.1.80	cheR	Methylase of chemotaxis methyl-accepting proteins	2.1.1.80	CDS	Chemotaxis protein methyltransferase CheR	2.1.1.80		base_ec	base_ec	base_ec	
methyl-accepting chemotaxis protein IV		tap	methyl-accepting chemotaxis sensory transducer with TarH sensor		CDS	Methyl-accepting chemotaxis protein IV (dipeptide chemoreceptor protein)			gs-sh	0	0	
methyl-accepting chemotaxis protein II		tar	methyl-accepting chemotaxis sensory transducer with TarH sensor		CDS	Methyl-accepting chemotaxis protein II (aspartate chemoreceptor protein)			gs-sh	0	0	
cheW-like domain protein			Chemotaxis signal transduction protein		CDS	Positive regulator of CheA protein activity (CheW)			gs-sh	gs-sh	gs-sh	
chemotaxis protein CheA	2.7.13.3	cheA	CheA signal transduction histidine kinase	2.7.13.3	CDS	Signal transduction histidine kinase CheA	2.7.3.-		base_ec	gs-sh	lit-s	
motility protein B		motB	Flagellar motor protein		CDS	Flagellar motor rotation protein MotB			gs-sh	gs-sh	gs-sh	
flagellar motor stator protein MotA		motA	flagellar motor stator protein MotA		CDS	Flagellar motor rotation protein MotA			base_lit-s	gs-sh	gs-sh	
flagellar transcriptional regulator FlhC		flhC	Flagellar transcriptional activator (FlhC).		CDS	Flagellar transcriptional activator FlhC			pfam-sh	pfam-sh	lit-s	
flagellar transcriptional activator family protein			Flagellar transcriptional activator (FlhD).		CDS	Flagellar transcriptional activator FlhD			tf_idf	tf_idf	lit-s	
putative transposase			Transposase and inactivated derivatives, IS1 family		CDS	Mobile element protein			0	0	0	
			Transposase and inactivated derivatives		CDS				base_one miss	base_both miss	base_one miss	
universal stress family protein			Universal stress protein UspA and related nucleotide-binding proteins		CDS	Universal stress protein C			0	tf_idf	0	
alpha,alpha-trehalose-phosphate synthase	2.4.1.15	otsA	trehalose 6-phosphate synthase (EC 2.4.1.15)	2.4.1.15	CDS	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming]"	2.4.1.15		base_tigr	base_ec	base_ec	
trehalose-phosphatase	3.1.3.12	otsB	trehalose 6-phosphatase (EC 3.1.3.12)	3.1.3.12	CDS	Trehalose-6-phosphate phosphatase	3.1.3.12		base_ec	base_ec	base_ec	
branched-chain amino acid transport system / permease component family protein			L-arabinose ABC transporter membrane protein		CDS	L-arabinose transport system permease protein (TC 3.A.1.2.2)			0	0	0	
arabinose import ATP-binding protein AraG	3.6.3.17	araG	L-arabinose ABC transporter ATP-binding protein	3.6.3.17	CDS	L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2)			base_ec	tf_idf	tf_idf	
periplasmic binding s and sugar binding domain of LacI family protein			L-arabinose-binding protein		CDS	L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)			gs-sh	0	0	
ferritin-like domain protein			Ferritin-like protein		CDS	Ferritin-like protein 2			lit-s	map	orth	
conserved hypothetical protein			Protein of unknown function (DUF2766).		CDS	FIG00510289: hypothetical protein			base_one HP	base_one HP	lit-s	
			YecR-like lipoprotein.		CDS	FIG00638267: hypothetical protein			base_one miss	base_one miss	0	
ferritin-1	1.16.3.1	ftnA	Ferritin-like protein	1.16.3.1	CDS	Ferritin-like protein 2			base_ec	0	0	
conserved hypothetical protein			probable metal-binding protein		CDS	FIG01045661: hypothetical protein			base_one HP	base_one HP	0	
tyrosine-specific transport protein		tyrP	aromatic amino acid transport protein		CDS	Tyrosine-specific transport protein			gs-sh	lit-s	map	
yecA family protein			yecA family protein		CDS	FIG00637942: hypothetical protein			base_lit-s	0	0	
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	2.7.8.5	pgsA	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	2.7.8.5	CDS	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	2.7.8.5		base_tigr	base_lit-s	base_ec	
excinuclease ABC subunit C	3.1.25.-	uvrC	Excinuclease ABC subunit C		CDS	Excinuclease ABC subunit C			base_tigr	lit-s	base_lit-s	
response regulator		uvrY	two component transcriptional regulator, LuxR family		CDS	BarA-associated response regulator UvrY (= GacA = SirA)			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF2594).		CDS	FIG00634007: hypothetical protein			base_one HP	base_one HP	lit-s	
regulatory protein SdiA		sdiA	transcriptional activator SdiA		CDS	N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator @ N-3-oxooctanoyl-L-homoserine lactone quorum-sensing transcriptional activator			gs-sh	0	0	
ABC transporter family protein			L-cystine ABC transporter ATP-binding protein/Diaminopimelate ABC transporter ATP-binding protein	3.6.3.-	CDS	"Cystine ABC transporter, ATP-binding protein"			0	0	0	
inner membrane amino-acid ABC transporter permease protein yecS		yecS	L-cystine ABC transporter membrane protein/Diaminopimelate ABC transporter membrane protein		CDS	"Cystine ABC transporter, permease protein"			gs-sh	tf_idf	map	
D-cysteine desulfhydrase	4.4.1.15	dcyD	D-cysteine desulfhydrase (EC 4.4.1.15)	4.4.1.15	CDS	D-cysteine desulfhydrase	4.4.1.15		base_ec	base_lit-s	base_ec	
bacterial extracellular solute-binding s, 3 family protein			L-cystine-binding protein/Diaminopimelate-binding protein		CDS	"Cystine ABC transporter, periplasmic cystine-binding protein FliY"			0	0	gs-sh	
flagellar regulatory protein FliZ		fliZ	flagellar regulatory protein FliZ		CDS	Flagellar biosynthesis protein FliZ			base_lit-s	0	0	
RNA polymerase sigma factor for flagellar operon		fliA	RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG		CDS	RNA polymerase sigma factor for flagellar operon			gs-sh	base_lit-s	map	
flagellin		fliC	Flagellin and related hook-associated proteins		CDS	Flagellar biosynthesis protein FliC			gs-sh	gs-sh	gs-sh	
flagellar hook-associated protein 2		fliD	Flagellar capping protein		CDS	Flagellar hook-associated protein FliD			gs-sh	gs-sh	gs-sh	
flagellar protein FliS		fliS	flagellar biosynthetic protein FliS		CDS	Flagellar biosynthesis protein FliS			base_tigr	lit-s	lit-s	
flagellar protein FliT		fliT	Flagellar protein FliT.		CDS	Flagellar biosynthesis protein FliT			lit-s	lit-s	lit-s	
alpha amylase, catalytic domain protein			Glycosidases	3.2.1.1	CDS	Cytoplasmic alpha-amylase	3.2.1.1		0	0	base_ec	
yedD-like family protein			YedD-like protein.		CDS	FIG00640199: hypothetical protein			lit-s	0	0	
conserved hypothetical protein			Predicted transporter component		CDS	Putative transport system permease protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Predicted redox protein, regulator of disulfide bond formation		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Gifsy-2 prophage protein			base_one HP	base_one HP	0	
conserved hypothetical protein			N-acetylglutamate synthase and related acetyltransferases	2.3.1.-	CDS	FIG00640229: hypothetical protein			base_one HP	base_one HP	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
flagellar hook-basal body complex protein FliE		fliE	flagellar hook-basal body complex protein FliE		CDS	Flagellar hook-basal body complex protein FliE			base_lit-s	lit-s	lit-s	
flagellar M-ring protein FliF		fliF	flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)		CDS	Flagellar M-ring protein FliF			base_tigr	lit-s	gs-sh	
flagellar motor switch protein FliG		fliG	flagellar motor switch protein FliG		CDS	Flagellar motor switch protein FliG			base_lit-s	lit-s	lit-s	
hrpE/YscL/FliH and V-type ATPase subunit E family protein			Flagellar biosynthesis/type III secretory pathway protein		CDS	Flagellar assembly protein FliH			gs-sh	pfam-sh	gs-sh	
flagellar protein export ATPase FliI	3.6.3.14	fliI	flagellar protein export ATPase FliI	3.6.3.14	CDS	Flagellum-specific ATP synthase FliI			base_lit-s	gs-sh	gs-sh	
flagellar export protein FliJ		fliJ	flagellar export protein FliJ		CDS	Flagellar protein FliJ			base_lit-s	pfam-sh	pfam-sh	
flagellar hook-length control protein		fliK	Flagellar hook-length control protein		CDS	Flagellar hook-length control protein FliK			lit-s	orth	orth	
flagellar basal body-associated FliL family protein			Flagellar basal body-associated protein		CDS	Flagellar biosynthesis protein FliL			gs-sh	pfam-sh	gs-sh	
flagellar motor switch protein FliM		fliM	flagellar motor switch protein FliM		CDS	Flagellar motor switch protein FliM			base_lit-s	lit-s	lit-s	
flagellar motor switch protein FliN		fliN	flagellar motor switch protein FliN		CDS	Flagellar motor switch protein FliN			base_lit-s	lit-s	lit-s	
flagellar biosynthetic protein FliO		fliO	flagellar biosynthetic protein FliO		CDS	Flagellar biosynthesis protein FliQ			base_lit-s	gs-sh	gs-sh	
flagellar biosynthetic protein FliP		fliP	flagellar biosynthetic protein FliP		CDS	Flagellar biosynthesis protein FliP			base_lit-s	lit-s	lit-s	
flagellar biosynthetic protein FliQ		fliQ	flagellar biosynthetic protein FliQ		CDS	Flagellar biosynthesis protein FliQ			base_lit-s	lit-s	lit-s	
flagellar biosynthetic protein FliR		fliR	flagellar biosynthetic protein FliR		CDS	Flagellar biosynthesis protein FliR			base_lit-s	lit-s	lit-s	
colanic acid capsular biosynthesis activation protein A		rcsA	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	"Colanic acid capsular biosynthesis activation accesory protein RcsA, co-regulator with RcsB"			gs-sh	0	0	
dextransucrase DSRB family protein			Dextransucrase DSRB.		CDS	DsrB protein			lit-s	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2525).		CDS	putative cytoplasmic protein			base_one HP	base_one HP	0	
diguanylate cyclase domain protein			diguanylate cyclase (GGDEF) domain		CDS	FIG00638997: hypothetical protein			base_tigr	0	0	
putative mannosyl-3-phosphoglycerate phosphatase			mannosyl-3-phosphoglycerate phosphatase-related protein	3.1.3.70	CDS	Putative mannosyl-3-phosphoglycerate phosphatase	3.1.3.70		map	lit-s	base_ec	
conserved hypothetical protein			Uncharacterized small protein		CDS	FIG01045396: hypothetical protein			base_one HP	base_one HP	0	
inner membrane protein yedI		yedI	Uncharacterized protein conserved in bacteria		CDS	Putative inner membrane protein			gs-sh	0	0	
very short patch repair protein	3.1.-.-	vsr	T/G mismatch-specific endonuclease	3.1.-,3.1.-.-	CDS	Very-short-patch mismatch repair endonuclease (G-T specific)			gs-sh	0	0	
conserved hypothetical protein			Carboxylate/Amino Acid/Amine Transporter		CDS	Permease of the drug/metabolite transporter (DMT) superfamily			base_one HP	base_one HP	0	
DNA-cytosine methyltransferase	2.1.1.37	dcm	DNA-methyltransferase (dcm)	2.1.1.37	CDS	DNA-cytosine methyltransferase	2.1.1.37		base_ec	base_lit-s	base_ec	
conserved hypothetical protein			Predicted HD superfamily hydrolase		CDS	metal-dependent phosphohydrolase			base_one HP	base_one HP	orth	
inner membrane protein yedR		yedR	hypothetical protein		CDS	FIG00638388: hypothetical protein			base_one HP	0	base_one HP	
gram-negative porin family protein			Outer membrane protein (porin)		CDS	Outer membrane protein N precursor			0	0	0	
gram-negative porin family protein						Outer membrane protein N			base_one miss	0	base_one miss	
gram-negative porin family protein			Outer membrane protein (porin)		CDS	Outer membrane protein C precursor			0	0	tf_idf	
DJ-1/PfpI family protein			chaperone Hsp31. Cysteine peptidase. MEROPS family C56		CDS	Chaperone protein hchA			0	0	gs-sh	
putative sensor-like histidine kinase yedV			heavy metal sensor kinase	2.7.13.3	CDS	Putative two component system histidine kinase YedV			gs-sh	0	0	
putative transcriptional regulatory protein yedW			heavy metal response regulator		CDS	Putative two-component system response regulator YedW			gs-sh	0	0	
hydroxyisourate hydrolase	3.5.2.17	uraH	hydroxyisourate hydrolase	3.5.2.17	CDS	Transthyretin-like protein precursor			base_lit-s	0	0	
sulfoxide reductase catalytic subunit yedY	1.8.-.-	yedY	Sulfite oxidase and related enzymes		CDS	Putative sulfite oxidase subunit YedY			gs-sh	gs-sh	map	
ferric reductase like transmembrane component family protein			Predicted membrane protein		CDS	FIG001196: Membrane protein YedZ			0	0	0	
metal-binding protein ZinT		zinT	Predicted periplasmic or secreted protein		CDS	Candidate zinc-binding lipoprotein ZinT			gs-sh	0	0	
conserved hypothetical protein			Cytochrome B561		CDS	Cytochrome b561 homolog 1			base_one HP	base_one HP	orth	
protein mtfA		mtfA	Uncharacterized protein conserved in bacteria		CDS	FIG01220476: hypothetical protein			gs-sh	0	lit-s	
bacterial Ig-like domain family protein			Large extracellular alpha-helical protein		CDS	"adherence and invasion outermembrane protein (Inv,enhances Peyer's patches colonization)"			0	0	0	
putative predicted protein, N-terminal fragment			hypothetical protein		CDS	FIG00638424: hypothetical protein			base_one HP	0	base_one HP	
H+ symporter family protein			metabolite-proton symporter		CDS	Shikimate transporter			base_tigr	0	0	
AMP nucleosidase	3.2.2.4	amn	AMP nucleosidase	3.2.2.4	CDS	AMP nucleosidase	3.2.2.4		base_lit-s	base_lit-s	base_lit-s	
conserved hypothetical protein			DNA-binding regulatory protein, YebC/PmpR family		CDS	FIG007491: hypothetical protein YeeN			base_one HP	base_one HP	0	
MATE efflux family protein			putative efflux protein, MATE family		CDS	FIG01069516: hypothetical protein			base_tigr	0	0	
HTH-type transcriptional regulator cbl		cbl	Transcriptional regulator		CDS	Alkanesulfonate utilization operon LysR-family regulator CbI			gs-sh	gs-sh	gs-sh	
nitrogen assimilation regulatory protein nac		nac	Transcriptional regulator		CDS	Nitrogen assimilation regulatory protein Nac			gs-sh	lit-s	orth	
putative L,D-transpeptidase ErfK/SrfK			Uncharacterized protein conserved in bacteria		CDS	"L,D-transpeptidase ErfK"			0	0	0	
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	2.4.2.21	cobT	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	2.4.2.21	CDS	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	2.4.2.21		base_tigr	base_ec	base_ec	
cobalamin 5'-phosphate synthase	2.7.8.26	cobS	cobalamin-5'-phosphate synthase (EC 2.7.8.26)	2.7.8.26	CDS	Cobalamin synthase			base_tigr	gs-sh	map	
bifunctional adenosylcobalamin biosynthesis protein CobU	2.7.7.62	cobU	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	2.7.7.62, 2.7.1.156,2.7.1.156, 2.7.7.62	CDS	Adenosylcobinamide-phosphate guanylyltransferase	2.7.7.62		base_ec-d	base_ec	base_ec-d	
transposase DDE domain protein			transposase, IS5 family		CDS	Mobile element protein			0	0	0	
conserved hypothetical protein						FIG00639305: hypothetical protein			base_one HP	base_one HP	base_one miss	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
			Outer membrane receptor for ferrienterochelin and colicins		CDS				base_one miss	base_both miss	base_one miss	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
tonB-dependent Receptor Plug domain protein						"COG1629: Outer membrane receptor proteins, mostly Fe transport"			base_one miss	0	base_one miss	
putative gTPase-like protein			Predicted GTPase		CDS	NgrB			0	0	0	
									base_both miss	base_both miss	base_both miss	
antigen 43		flu	Autotransporter beta-domain./Extended Signal Peptide of Type V secretion system.		CDS	Antigen 43 precursor			gs-sh	0	0	
inner membrane protein yeeR		yeeR	hypothetical protein		CDS	probable membrane protein b2001			base_one HP	0	base_one HP	
conserved hypothetical protein			DNA repair protein radc		CDS	putative DNA repair protein			base_one HP	base_one HP	orth	
conserved hypothetical protein			Protein of unknown function (DUF987).		CDS	Uncharacterized protein YeeT			base_one HP	base_one HP	0	
antitoxin YeeU		yeeU	YagB/YeeU/YfjZ family.		CDS	hypothetical protein			gs-sh	base_one HP	base_one HP	
toxin CbtA		cbtA	Protein of unknown function (DUF1219).		CDS	YeeV toxin protein			gs-sh	0	0	
conserved hypothetical protein			hypothetical protein		CDS	Uncharacterized protein YeeW			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	UPF0265 protein YeeX			base_one HP	base_one HP	0	
inner membrane protein yeeA		yeeA	Predicted membrane protein		CDS	Putative inner membrane protein			gs-sh	orth	map	
gyrI-like small molecule binding domain protein			DNA gyrase inhibitor		CDS	DNA gyrase inhibitory protein			gs-sh	map	orth	
D-alanyl-D-alanine carboxypeptidase dacD	3.4.16.4	dacD	penicillin-binding protein 6. Serine peptidase. MEROPS family S11	3.4.16.4	CDS	D-alanyl-D-alanine carboxypeptidase	3.4.16.4		base_ec	base_ec	base_ec	
exodeoxyribonuclease I	3.1.11.1	sbcB	Exodeoxyribonuclease I subunit C (EC 3.1.11.1)	3.1.11.1	CDS	Exodeoxyribonuclease I	3.1.11.1		base_ec	base_ec	base_ec	
sirA-like family protein			Predicted redox protein, regulator of disulfide bond formation		CDS	FIG00638167: hypothetical protein			gs-sh	0	0	
conserved hypothetical protein			Predicted transporter component		CDS	Putative transport system permease protein			base_one HP	base_one HP	0	
inner membrane transport protein YeeF		yeeF	putrescine:proton symporter, AAT family (TC 2.A.3.1.13)		CDS	Putrescine importer			gs-sh	0	0	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	Hypothetical transcriptional regulator yeeY			gs-sh	gs-sh	gs-sh	
protein yeeZ		yeeZ	Nucleoside-diphosphate-sugar epimerases		CDS	Nucleoside-diphosphate-sugar epimerases			gs-sh	gs-sh	base_lit-s	
addiction module toxin, Txe/YoeB family			toxin-antitoxin system, toxin component, Txe/YoeB family		CDS	YoeB toxin protein			base_tigr	0	0	
antitoxin YefM		yefM	prevent-host-death family protein		CDS	YefM protein (antitoxin to YoeB)			gs-sh	0	0	
ATP phosphoribosyltransferase	2.4.2.17	hisG	ATP phosphoribosyltransferase	2.4.2.17	CDS	ATP phosphoribosyltransferase	2.4.2.17		base_lit-s	base_lit-s	base_lit-s	
histidinol dehydrogenase	1.1.1.23	hisD	histidinol dehydrogenase (EC 1.1.1.23)	1.1.1.23	CDS	Histidinol dehydrogenase	1.1.1.23		base_ec	base_ec	base_ec	
histidinol-phosphate transaminase	2.6.1.9	hisC	histidinol phosphate aminotransferase apoenzyme (EC 2.6.1.9)	2.6.1.9	CDS	Histidinol-phosphate aminotransferase	2.6.1.9		base_tigr	base_ec	base_ec	
histidine biosynthesis bifunctional protein hisB	4.2.1.19	hisB	histidinol-phosphatase	3.1.3.15, 4.2.1.19	CDS	Histidinol-phosphatase / Imidazoleglycerol-phosphate dehydratase	3.1.3.15, 4.2.1.19		base_ec-d	base_ec-d	base_ec	
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit	2.4.2.-	hisH	imidazole glycerol phosphate synthase subunit hisH (EC 2.4.2.-)	2.4.2.-	CDS	Imidazole glycerol phosphate synthase amidotransferase subunit	2.4.2.-		base_tigr	gs-sh	gs-sh	
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase	5.3.1.16	hisA	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16)	5.3.1.16	CDS	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	5.3.1.16		base_tigr	base_ec	base_ec	
imidazole glycerol phosphate synthase subunit hisF	4.1.3.-	hisF	imidazole glycerol phosphate synthase subunit hisF (EC 4.1.3.-)	4.1.3.-	CDS	Imidazole glycerol phosphate synthase cyclase subunit	4.1.3.-		lit-s	gs-sh	gs-sh	
phosphoribosyl-ATP diphosphatase	3.6.1.31	hisE	phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase	3.5.4.19, 3.6.1.31,3.6.1.31, 3.5.4.19	CDS	Phosphoribosyl-AMP cyclohydrolase / Phosphoribosyl-ATP pyrophosphatase	3.5.4.19, 3.6.1.31		base_tigr	base_ec-d	base_ec-d	
chain length determinant protein		wzzB	Chain length determinant protein		CDS	regulator of length of O-antigen component of lipopolysaccharide chains			lit-s	gs-sh	orth	
UDP-glucose 6-dehydrogenase	1.1.1.22	ugd	nucleotide sugar dehydrogenase	1.1.1.22	CDS	UDP-glucose dehydrogenase	1.1.1.22		base_ec	base_ec	base_ec	
6-phosphogluconate dehydrogenase	1.1.1.44	gnd	6-phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44)	1.1.1.44	CDS	"6-phosphogluconate dehydrogenase, decarboxylating"	1.1.1.44		base_tigr	base_ec	base_ec	
			Predicted glycosyltransferases		CDS				base_one miss	base_both miss	base_one miss	
transposase DDE domain protein			Transposase and inactivated derivatives, IS5 family		CDS	Mobile element protein			0	0	0	
glycosyl transferase 2 family protein			Predicted glycosyltransferases		CDS	"glycosyl transferase, family 2"			0	lit-s	0	
glycosyl transferases group 1 family protein			Glycosyltransferase		CDS	putative glucose transferase			0	0	0	
			Acetyltransferase (isoleucine patch superfamily)	2.3.1.-	CDS				base_one miss	base_both miss	base_one miss	
putative glycosyltransferase			hypothetical protein		CDS	putative Galf transferase			base_one HP	0	base_one HP	
putative membrane protein			hypothetical protein		CDS	Oligosaccharide repeat unit polymerase Wzy			base_one HP	0	base_one HP	
UDP-galactopyranose mutase	5.4.99.9	glf	UDP-galactopyranose mutase (EC 5.4.99.9)	5.4.99.9	CDS	UDP-galactopyranose mutase	5.4.99.9		base_tigr	base_lit-s	base_ec	
putative O-antigen transporter			Membrane protein involved in the export of O-antigen and teichoic acid		CDS	"Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids"			0	0	0	
			dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)	5.1.3.13	CDS				base_one miss	base_both miss	base_one miss	
glucose-1-phosphate thymidylyltransferase	2.7.7.24	rfbA	Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	2.7.7.24	CDS	Glucose-1-phosphate thymidylyltransferase	2.7.7.24		base_ec	base_ec	base_ec	
dTDP-4-dehydrorhamnose reductase	1.1.1.133	rfbD	dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)	1.1.1.133	CDS	dTDP-4-dehydrorhamnose reductase	1.1.1.133		base_tigr	base_lit-s	base_ec	
dTDP-glucose 4,6-dehydratase	4.2.1.46	rfbB	dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	4.2.1.46	CDS	"dTDP-glucose 4,6-dehydratase"	4.2.1.46		base_tigr	base_ec	base_ec	
regulatory protein GalF		galF	UDP-glucose pyrophosphorylase regulatory subunit	2.7.7.9	CDS	UTP--glucose-1-phosphate uridylyltransferase	2.7.7.9		gs-sh	gs-sh	base_ec	
colanic acid biosynthesis protein WcaM		wcaM	colanic acid biosynthesis protein WcaM		CDS	Colanic acid biosynthesis protein wcaM			base_lit-s	lit-s	lit-s	
colanic acid biosynthesis glycosyltransferase WcaL	2.4.-.-	wcaL	colanic acid biosynthesis glycosyltransferase WcaL		CDS	Colanic acid biosynthesis glycosyl transferase WcaL			base_lit-s	0	0	
colanic acid biosynthesis pyruvyl transferase WcaK	2.-.-.-	wcaK	colanic acid biosynthesis pyruvyl transferase WcaK		CDS	Colanic acid biosysnthesis protein WcaK			base_lit-s	0	0	
lipopolysaccharide biosynthesis protein wzxC		wzxC	Membrane protein involved in the export of O-antigen and teichoic acid		CDS	Lipopolysaccharide biosynthesis protein WzxC			gs-sh	lit-s	map	
undecaprenyl-phosphate glucose phosphotransferase	2.7.8.-		Undecaprenyl-phosphate glucose phosphotransferase		CDS	Colanic acid biosynthsis UDP-glucose lipid carrier transferase WcaJ			lit-s	map	gs-sh	
phosphoglucomutase/phosphomannomutase, C-terminal domain protein			phosphomannomutase (EC 5.4.2.8)	5.4.2.8	CDS	Phosphomannomutase	5.4.2.8		0	0	base_ec	
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	5.3.1.8		mannose-1-phosphate guanylyltransferase (GDP)/mannose-6-phosphate isomerase, type 2	2.7.7.13,2.7.7.22, 5.3.1.8	CDS	Mannose-1-phosphate guanylyltransferase (GDP) / Mannose-6-phosphate isomerase	2.7.7.22, 5.3.1.8		base_tigr	base_ec-d	base_ec-d	
colanic acid biosynthesis glycosyltransferase WcaI	2.4.-.-	wcaI	colanic acid biosynthesis glycosyl transferase WcaI		CDS	Colanic acid biosysnthesis glycosyl transferase WcaI			base_tigr	0	0	
GDP-mannose mannosyl hydrolase	3.6.1.-	nudD	ADP-ribose pyrophosphatase	3.6.1.-	CDS	GDP-mannose mannosyl hydrolase	3.6.1.-		gs-sh	base_lit-s	map	
GDP-L-fucose synthase	1.1.1.271	fcl	Nucleoside-diphosphate-sugar epimerases	1.1.1.271	CDS	GDP-L-fucose synthetase; Colanic acid biosynthesis protein wcaG	1.1.1.271		base_ec	base_ec	base_ec	
GDP-mannose 4,6-dehydratase	4.2.1.47	gmd	GDP-mannose 4,6-dehydratase	4.2.1.47	CDS	"GDP-mannose 4,6-dehydratase"	4.2.1.47		base_lit-s	base_ec	base_ec	
colanic acid biosynthesis acetyltransferase WcaF	2.3.1.-	wcaF	colanic acid biosynthesis acetyltransferase WcaF	2.3.1.-	CDS	Colanic acid biosynthesis acetyltransferase WcaF	2.3.1.-		base_lit-s	lit-s	lit-s	
colanic acid biosynthesis glycosyltransferase WcaE	2.4.-.-	wcaE	colanic acid biosynthesis glycosyl transferase WcaE	2.4.-	CDS	Colanic acid biosynthesis glycosyl transferase WcaE			base_tigr	map	lit-s	
putative colanic acid polymerase WcaD			putative colanic acid polymerase WcaD		CDS	Colanic acid polymerase WcaD			base_lit-s	lit-s	lit-s	
colanic acid biosynthesis glycosyltransferase WcaC	2.4.-.-	wcaC	colanic acid biosynthesis glycosyl transferase WcaC	2.4.-	CDS	Colanic acid biosynthesis glycosyl transferase WcaC			base_tigr	map	lit-s	
colanic acid biosynthesis acetyltransferase WcaB	2.3.1.-	wcaB	colanic acid biosynthesis acetyltransferase WcaB	2.3.1.-	CDS	Colanic acid biosynthesis acetyltransferase WcaB	2.3.1.-		base_lit-s	lit-s	lit-s	
colanic acid biosynthesis glycosyltransferase WcaA	2.4.-.-	wcaA	colanic acid biosynthesis glycosyl transferase WcaA		CDS	Colanic acid biosynthesis glycosyl transferase WcaA			base_tigr	gs-sh	lit-s	
tyrosine-protein kinase wzc	2.7.10.-	wzc	capsular exopolysaccharide family	2.7.10.-	CDS	Tyrosine-protein kinase Wzc	2.7.10.2		gs-sh	lit-s	map	
low molecular weight protein-tyrosine-phosphatase wzb	3.1.3.48	wzb	Protein-tyrosine-phosphatase	3.1.3.48	CDS	Low molecular weight protein-tyrosine-phosphatase Wzb	3.1.3.48		base_ec	base_ec	base_ec	
putative outer membrane lipoprotein Wza			Periplasmic protein involved in polysaccharide export		CDS	Polysaccharide export lipoprotein Wza			0	0	tf_idf	
transporter associated domain protein			Membrane protein TerC, possibly involved in tellurium resistance		CDS	Putative capsular polysaccharide transport protein YegH			0	0	0	
asmA family protein			Uncharacterized protein involved in outer membrane biogenesis		CDS	AsmA protein			gs-sh	lit-s	gs-sh	
deoxycytidine triphosphate deaminase	3.5.4.13	dcd	dCTP deaminase (EC 3.5.4.13)	3.5.4.13	CDS	Deoxycytidine triphosphate deaminase	3.5.4.13		base_tigr	base_ec	base_ec	
uridine kinase	2.7.1.48	udk	uridine kinase (EC 2.7.1.48)	2.7.1.48	CDS	Uridine kinase [C1]	2.7.1.48		base_tigr	base_ec	base_ec	
diguanylate cyclase domain protein			PAS domain S-box/diguanylate cyclase (GGDEF) domain		CDS	FIG00639031: hypothetical protein			0	0	0	
DNA-3-methyladenine glycosylase 2	3.2.2.21	alkA	DNA-3-methyladenine glycosylase II (EC 3.2.2.21)	3.2.2.21	CDS	DNA-3-methyladenine glycosylase II	3.2.2.21		base_ec	base_ec	base_ec	
hsp70 family protein			Molecular chaperone		CDS	Putative heat shock protein YegD			0	0	0	
conserved hypothetical protein			Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains		CDS	Putative chaperonin			base_one HP	base_one HP	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00639186: hypothetical protein			base_one HP	base_one HP	lit-s	
phosphatase 2C family protein			Protein phosphatase 2C.		CDS	COG0631: Serine/threonine protein phosphatase			lit-s	0	0	
von Willebrand factor type A domain protein			Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain		CDS	FIG00638207: hypothetical protein			0	0	0	
efflux transporter, RND family, MFP subunit			RND family efflux transporter, MFP subunit		CDS	Probable RND efflux membrane fusion protein			base_tigr	0	0	
export membrane family protein			Cation/multidrug efflux pump		CDS	Multidrug transporter MdtB			0	0	0	
multidrug resistance protein MdtC		mdtC	Cation/multidrug efflux pump		CDS	Multidrug transporter MdtC			gs-sh	0	0	
putative multidrug resistance protein mdtD			drug resistance transporter, EmrB/QacA subfamily		CDS	Multidrug transporter MdtD			gs-sh	0	0	
HAMP domain protein			Signal transduction histidine kinase	2.7.13.3	CDS	Sensory histidine kinase BaeS			gs-sh	gs-sh	gs-sh	
transcriptional regulatory , C terminal family protein			Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	Response regulator BaeR			0	0	0	
putative two-component system protein						FIG00638368: hypothetical protein			base_one miss	0	base_one miss	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00638559: hypothetical protein			base_one HP	base_one HP	lit-s	
peptidase U32 family protein			Collagenase and related proteases	3.4.-	CDS	Putative protease			0	0	tf_idf	
ogr/Delta-like zinc finger family protein			Ogr/Delta-like zinc finger.		CDS	putative positive regulator of late gene transcription			lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00639423: hypothetical protein			lit-s	base_one HP	base_one HP	
lipid kinase YegS	2.7.1.-	yegS	lipid kinase YegS		CDS	Transcription regulator [contains diacylglycerol kinase catalytic domain]			base_lit-s	0	0	
deoR C terminal sensor domain protein			Transcriptional regulators of sugar metabolism		CDS	Galactitol utilization operon repressor			gs-sh	0	0	
transposase family protein			Transposase.		CDS	Mobile element protein			lit-s	0	0	
deoR-like helix-turn-helix domain protein			Transcriptional regulators of sugar metabolism		CDS	Galactitol utilization operon repressor			gs-sh	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
zinc-binding dehydrogenase family protein			galactitol 1-phosphate 5-dehydrogenase (EC 1.1.1.251)	1.1.1.251	CDS	Galactitol-1-phosphate 5-dehydrogenase	1.1.1.251		0	0	base_ec	
galactitol permease IIC component		gatC	PTS system galactitol-specific EIIC component, Gat family (TC 4.A.5.1.1)		CDS	"PTS system, galactitol-specific IIC component"	2.7.1.69		gs-sh	orth	map	
galactitol-specific phosphotransferase enzyme IIB component	2.7.1.69	gatB	PTS system galactitol-specific EIIB component, Gat family (TC 4.A.5.1.1)	2.7.1.69	CDS	"PTS system, galactitol-specific IIB component"	2.7.1.69		base_ec	base_ec	base_ec	
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein			PTS system galactitol-specific EIIA component, Gat family (TC 4.A.5.1.1)	2.7.1.69	CDS	"PTS system, galactitol-specific IIA component"	2.7.1.69		0	0	base_ec	
D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	4.1.2.40		tagatose-bisphosphate aldolase noncatalytic subunit	2.7.1.144	CDS	Tagatose-6-phosphate kinase GatZ	2.7.1.144		base_tigr	base_ec-d	base_ec	
class II aldolase, tagatose bisphosphate family	4.1.2.-		tagatose-bisphosphate aldolase catalytic subunit	4.1.2.40	CDS	"Tagatose-1,6-bisphosphate aldolase GatY"	4.1.2.-		0	0	0	
fructose-bisphosphate aldolase class 1	4.1.2.13	fbaB	fructose-bisphosphate aldolase (EC 4.1.2.13)	4.1.2.13	CDS	Fructose-bisphosphate aldolase class I	4.1.2.13		base_ec	base_ec	base_ec	
putative nucleoside transporter yegT			nucleoside transporter		CDS	Putative nucleoside transporter YegT			gs-sh	lit-s	orth	
ADP-ribosylglycohydrolase family protein			ADP-ribosylglycohydrolase	3.2.-	CDS	ADP-ribosylglycohydrolase YegU	3.2.-.-		lit-s	0	0	
conserved hypothetical protein			transcriptional regulator, GntR family		CDS	Uncharacterized HTH-type transcriptional regulator YegW			base_one HP	base_one HP	orth	
pfkB carbohydrate kinase family protein			Sugar kinases, ribokinase family		CDS	"Uncharacterized sugar kinase YegV, PfkB family"			gs-sh	map	tf_idf	
glycosyl hydrolases 25 family protein			Lyzozyme M1 (1,4-beta-N-acetylmuramidase)		CDS	"Glycosyl hydrolase YegX, family 25"			0	0	0	
hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	2.7.4.7	thiD	hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	2.7.1.49, 2.7.4.7	CDS	Phosphomethylpyrimidine kinase	2.7.4.7		base_ec-d	base_ec	base_ec-d	
hydroxyethylthiazole kinase	2.7.1.50	thiM	hydroxyethylthiazole kinase	2.7.1.50	CDS	Hydroxyethylthiazole kinase	2.7.1.50		base_lit-s	base_ec	base_ec	
transcriptional repressor rcnR		rcnR	Uncharacterized protein conserved in bacteria		CDS	Uncharacterized protein YohL			gs-sh	0	0	
nickel/cobalt efflux system rcnA		rcnA	ABC-type uncharacterized transport system, permease component		CDS	Nickel/cobalt efflux transporter RcnA			gs-sh	0	0	
conserved hypothetical protein			Predicted integral membrane protein		CDS	Uncharacterized protein YohN precursor			base_one HP	base_one HP	0	
fimbrial family protein			Fimbrial protein.		CDS	Uncharacterized protein YehA precursor			lit-s	0	0	
type VII secretion system (T7SS), usher family protein			P pilus assembly protein, porin PapC		CDS	Fimbriae usher protein StcC			0	0	0	
gram-negative pili assembly chaperone, C-terminal domain protein			P pilus assembly protein, chaperone PapD		CDS	Uncharacterized fimbrial chaperone YehC precursor			0	0	0	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	Putative fimbrial-like protein			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2574).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
cobQ/CobB/MinD/ParA nucleotide binding domain protein			ATPases involved in chromosome partitioning		CDS	"Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like"			gs-sh	0	0	
methionyl-tRNA synthetase	6.1.1.10	metG	methionyl-tRNA synthetase (EC 6.1.1.10)	6.1.1.10	CDS	Methionyl-tRNA synthetase	6.1.1.10		base_ec	base_ec	base_ec	
WGR domain protein			Uncharacterized conserved protein		CDS	Molybdate metabolism regulator			0	0	0	
putative molybdate metabolism regulator domain protein			hypothetical protein		CDS	Molybdate metabolism regulator			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Domain of unknown function (DUF4132).		CDS	Molybdate metabolism regulator			base_one HP	base_one HP	0	
conserved hypothetical protein			Domain of unknown function (DUF4132).		CDS	Molybdate metabolism regulator			base_one HP	base_one HP	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
AAA domain family protein			MoxR-like ATPases		CDS	FIG00638960: hypothetical protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00765533: hypothetical protein			lit-s	base_one HP	base_one HP	
von Willebrand factor type A domain protein			Protein containing von Willebrand factor type A (vWA) domain		CDS	Mg-chelatase subunit ChlD			0	0	0	
SWIM zinc finger family protein			SWIM zinc finger.		CDS	YehQ protein			lit-s	0	0	
putative yehQ domain protein						YehQ protein			base_one miss	lit-s	base_one miss	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Hypothetical lipoprotein yehR			base_one HP	base_one HP	gs-sh	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00638377: hypothetical protein			base_one HP	base_one HP	lit-s	
response regulator			two component transcriptional regulator, LytTR family		CDS	Hypothetical response regulatory protein yehT			map	orth	gs-sh	
histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein			Putative regulator of cell autolysis	2.7.13.3	CDS	Putative two-component system sensor kinase			0	0	orth	
HTH-type transcriptional repressor YcgE		ycgE	Predicted transcriptional regulators		CDS	HTH-type transcriptional regulator mlrA			gs-sh	gs-sh	gs-sh	
putative osmoprotectant uptake system permease protein yehW			ABC-type proline/glycine betaine transport systems, permease component		CDS	Osmoprotectant ABC transporter inner membrane protein YehW			gs-sh	0	0	
ABC transporter family protein			ABC-type proline/glycine betaine transport systems, ATPase components		CDS	Osmoprotectant ABC transporter ATP-binding subunit YehX			0	0	0	
putative osmoprotectant uptake system permease protein yehY			ABC-type proline/glycine betaine transport systems, permease component		CDS	Osmoprotectant ABC transporter permease protein YehY			gs-sh	0	0	
substrate binding domain of ABC-type glycine betaine transport system family protein			Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)		CDS	Osmoprotectant ABC transporter binding protein YehZ			0	0	0	
periplasmic beta-glucosidase	3.2.1.21	bglX	beta-glucosidase (EC:3.2.1.21)	3.2.1.21	CDS	Periplasmic beta-glucosidase	3.2.1.21		base_ec	base_ec	base_ec	
conserved hypothetical protein						FIG00640500: hypothetical protein			base_one HP	base_one HP	base_one miss	
D-lactate dehydrogenase	1.1.1.28	dld	FAD/FMN-containing dehydrogenases	1.1.1.28	CDS	D-Lactate dehydrogenase	1.1.2.5		base_ec	base_ec-d	base_ec-d	
D-alanyl-D-alanine endopeptidase	3.4.21.-	pbpG	murein-DD-endopeptidase. Serine peptidase. MEROPS family S11	3.4.21.-	CDS	Murein-DD-endopeptidase	3.4.99.-		gs-sh	gs-sh	map	
inner membrane protein yohC		yohC	Protein of unknown function (DUF1282).		CDS	Putative membrane protein			gs-sh	orth	0	
inner membrane protein yohD		yohD	Uncharacterized membrane-associated protein		CDS	DedA family inner membrane protein YohD			gs-sh	gs-sh	gs-sh	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	3-oxoacyl-[acyl-carrier protein] reductase	1.1.1.100		0	0	0	
efflux transporter, outer membrane factor (OMF) lipo, NodT family protein			efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family		CDS	"RND efflux system, outer membrane lipoprotein, NodT family"			base_tigr	0	0	
conserved hypothetical protein						"RND efflux system, outer membrane lipoprotein, NodT family"			base_one HP	base_one HP	base_one miss	
tRNA-dihydrouridine synthase C	1.-.-.-	dusC	tRNA-U20a,U20b-dihydrouridine synthase	1.-	CDS	tRNA-dihydrouridine synthase C	1.-.-.-		gs-sh	base_lit-s	gs-sh	
lrgA family protein			Putative effector of murein hydrolase LrgA		CDS	Antiholin-like protein LrgA			gs-sh	gs-sh	pfam-sh	
inner membrane protein yohK		yohK	TIGR00659 family protein		CDS	LrgA-associated membrane protein LrgB			gs-sh	gs-sh	gs-sh	
cytidine deaminase	3.5.4.5	cdd	cytidine deaminase (EC 3.5.4.5)	3.5.4.5	CDS	Cytidine deaminase	3.5.4.5		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Uncharacterized membrane protein		CDS	SanA protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Protein of unknown function (DUF2542).		CDS	FIG00638799: hypothetical protein			base_one HP	base_one HP	lit-s	
NAD-dependent dihydropyrimidine dehydrogenase sunbunit PreT	1.3.1.1	yeiT	NADPH-dependent glutamate synthase beta chain and related oxidoreductases		CDS	Pyridine nucleotide-disulphide oxidoreductase family protein			gs-sh	0	0	
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	1.3.1.1	yeiA	dihydroorotate oxidase B, catalytic subunit	1.3.3.1	CDS	Dihydropyrimidine dehydrogenase [NADP+]	1.3.1.2		base_ec-d	base_ec-d	base_ec-d	
branched-chain amino acid transport system / permease component family protein			glucose ABC transporter membrane protein/galactose ABC transporter membrane protein		CDS	"Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3)"			0	0	0	
galactose/methyl galactoside import ATP-binding protein MglA	3.6.3.17	mglA	glucose ABC transporter ATP-binding protein/galactose ABC transporter ATP-binding protein	3.6.3.17	CDS	"Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA"	3.6.3.17		base_ec	base_ec	base_ec	
D-galactose-binding periplasmic protein		mglB	glucose-binding protein/galactose-binding protein		CDS	"Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)"			gs-sh	0	0	
bacterial regulatory s, lacI family protein			transcriptional regulator, LacI family		CDS	"Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator"			gs-sh	0	0	
conserved hypothetical protein			Predicted membrane protein		CDS	FIG00924762: hypothetical protein			base_one HP	base_one HP	0	
GTP cyclohydrolase I	3.5.4.16	folE	GTP cyclohydrolase I (EC 3.5.4.16)	3.5.4.16	CDS	GTP cyclohydrolase I type 1	3.5.4.16		base_tigr	base_ec	base_ec	
S-formylglutathione hydrolase	3.1.2.12	fghA	S-formylglutathione hydrolase	3.1.2.12	CDS	S-formylglutathione hydrolase	3.1.2.12		base_lit-s	base_lit-s	base_lit-s	
colicin I receptor		cirA	Outer membrane receptor for ferrienterochelin and colicins		CDS	Colicin I receptor precursor			gs-sh	gs-sh	map	
lysine-specific permease		lysP	lysine:proton symporter, AAT family (TC 2.A.3.1.2)		CDS	Lysine-specific permease			gs-sh	lit-s	map	
conserved hypothetical protein						hypothetical protein			base_one HP	lit-s	base_one HP	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	LysR family transcriptional regulator YeiE			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			conserved hypothetical integral membrane protein		CDS	Putative membrane protein YeiH			base_one HP	base_one HP	0	
apurinic endonuclease family protein			Endonuclease IV	3.1.21.2,3.1.21.-	CDS	Endonuclease IV	3.1.21.2		base_tigr	map	base_lit-s	
pfkB carbohydrate kinase family protein			Sugar kinases, ribokinase family		CDS	Uncharacterized sugar kinase YeiI			gs-sh	map	orth	
nucleoside permease nupX		nupX	nucleoside transporter		CDS	Probable pyrimidine nucleoside transport protein associated with pseudouridine catabolism			gs-sh	0	0	
pyrimidine-specific ribonucleoside hydrolase rihB	3.2.2.8	rihB	Inosine-uridine nucleoside N-ribohydrolase	3.2.2.8	CDS	Inosine-uridine preferring nucleoside hydrolase	3.2.2.1		base_ec	base_ec-d	base_ec-d	
regulatory protein nsr		nsr	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases		CDS	Predicted N-ribosylNicotinamide CRP-like regulator			gs-sh	gs-sh	map	
putative pseudouridine transporter			nucleoside transporter		CDS	"Inner membrane transport protein YeiM, in cluster with pseudouridine metabolism operon"			0	0	0	
pseudouridine-5'-phosphate glycosidase	3.2.-.-	psuG	Uncharacterized enzyme involved in pigment biosynthesis		CDS	Pseudouridine 5'-phosphate glycosidase			gs-sh	gs-sh	map	
pseudouridine kinase	2.7.1.83	psuK	Sugar kinases, ribokinase family		CDS	Pseudouridine kinase	2.7.1.83		gs-sh	base_ec	map	
PTS system, Fru family, IIB component domain protein	2.7.1.69		PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.1)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.1)		CDS	"PTS system, fructose-specific IIB component / PTS system, fructose-specific IIC component"	2.7.1.69, 2.7.1.69		0	base_ec-d	0	
1-phosphofructokinase	2.7.1.56	pfkB	fructose-1-phosphate kinase (EC 2.7.1.56)	2.7.1.56	CDS	1-phosphofructokinase	2.7.1.56		base_ec	base_lit-s	base_ec	
phosphocarrier, HPr family protein			Phosphocarrier protein HPr/PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.1)		CDS	"Fructose-specific phosphocarrier protein HPr / PTS system, fructose-specific IIA component"	2.7.1.69, 2.7.1.69		base_tigr	0	0	
putative uPF0153 protein yeiW			Flagellin N-methylase.		CDS	proteinase inhibitor			gs-sh	gs-sh	map	
sugar efflux transporter B		setB	sugar efflux transporter		CDS	Sugar efflux transporter B			gs-sh	lit-s	orth	
putative uPF0153 protein yeiW						FIG00638093: hypothetical protein			base_one miss	0	base_one miss	
elongation factor P-like protein		yeiP	elongation factor P-like protein YeiP		CDS	Translation elongation factor P-related protein			gs-sh	0	0	
mannitol dehydrogenase Rossmann domain protein			Mannitol-1-phosphate/altronate dehydrogenases		CDS	D-mannonate oxidoreductase	1.1.1.57		0	0	0	
cobW/HypB/UreG, nucleotide-binding domain protein			Putative GTPases (G3E family)		CDS	"Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family"			gs-sh	0	0	
inner membrane protein yeiU		yeiU	lipid-A kinase		CDS	Putative membrane protein			gs-sh	orth	map	
lipoprotein spr		spr	spr peptidase. Cysteine peptidase. MEROPS family C40		CDS	Lipoprotein spr precursor			gs-sh	gs-sh	gs-sh	
EAL domain protein			FOG: EAL domain		CDS	Rtn protein			lit-s	0	0	
bacterial extracellular solute-binding s, 5 Middle family protein			ABC-type oligopeptide transport system, periplasmic component		CDS	"ABC transporter, periplasmic substrate-binding protein"			0	0	0	
inner membrane ABC transporter permease protein yejB		yejB	ABC-type uncharacterized transport system, permease component		CDS	Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)			gs-sh	gs-sh	gs-sh	
inner membrane ABC transporter permease protein yejE		yejE	ABC-type uncharacterized transport system, permease component		CDS	Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)			gs-sh	gs-sh	gs-sh	
nickel import ATP-binding protein NikE	3.6.3.24	nikE	ABC-type uncharacterized transport system, duplicated ATPase component		CDS	Putative ABC transporter ATP-binding protein			gs-sh	0	0	
yejG-like family protein			YejG-like protein.		CDS	FIG00896318: hypothetical protein			lit-s	0	0	
bicyclomycin resistance protein		bcr	drug resistance transporter, Bcr/CflA subfamily		CDS	"MFS family multidrug transport protein, bicyclomycin resistance protein"			gs-sh	0	0	
ribosomal small subunit pseudouridine synthase A	5.4.99.19	rsuA	ribosomal small subunit pseudouridine synthase A	5.4.99.19,5.4.99.-	CDS	Ribosomal small subunit pseudouridine synthase A	4.2.1.70		base_lit-s	base_ec-d	lit-s	
helicase conserved C-terminal domain protein			DNA or RNA helicases of superfamily II		CDS	ATP-dependent RNA helicase YejH			0	0	0	
50S ribosomal protein L25		rplY	LSU ribosomal protein L25P		CDS	LSU ribosomal protein L25p			gs-sh	orth	lit-s	
nucleoid-associated protein YejK		yejK	Nucleoid-associated protein		CDS	Nucleoid-associated protein NdpA			gs-sh	map	orth	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG002927: hypothetical protein			base_one HP	base_one HP	lit-s	
inner membrane protein yejM		yejM	Predicted hydrolase of alkaline phosphatase superfamily		CDS	FIG001881: hydrolase of alkaline phosphatase superfamily			gs-sh	map	lit-s	
outer membrane autotransporter barrel domain protein			outer membrane autotransporter barrel domain		CDS	Putative ATP-binding component of a transport system			base_tigr	0	0	
transposase DDE domain protein			Transposase and inactivated derivatives, IS5 family		CDS	Mobile element protein			0	0	0	
bacterial regulatory s, luxR family protein			two component transcriptional regulator, LuxR family		CDS	Nitrate/nitrite response regulator protein			gs-sh	0	0	
cytochrome c-type biogenesis protein CcmH		ccmH	Cytochrome c biogenesis factor		CDS	Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH			gs-sh	pfam-sh	map	
thiol:disulfide interchange protein DsbE		dsbE	periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily		CDS	"Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase"			gs-sh	0	0	
cytochrome c-type biogenesis protein CcmF		ccmF	c-type cytochrome biogenesis protein CcmF		CDS	Cytochrome c heme lyase subunit CcmF			base_tigr	gs-sh	gs-sh	
cytochrome c-type biogenesis protein CcmE		ccmE	Cytochrome c-type biogenesis protein CcmE		CDS	"Cytochrome c-type biogenesis protein CcmE, heme chaperone"			lit-s	pfam-sh	pfam-sh	
heme exporter protein CcmD		ccmD	heme exporter protein CcmD		CDS	"Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE"			base_lit-s	pfam-sh	pfam-sh	
heme exporter CcmC family protein		ccmC	heme exporter protein CcmC		CDS	"Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE"			base_tigr	gs-sh	gs-sh	
heme exporter protein CcmB		ccmB	heme exporter protein CcmB		CDS	"ABC transporter involved in cytochrome c biogenesis, CcmB subunit"			base_lit-s	pfam-sh	pfam-sh	
heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	CDS	"ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA"			base_lit-s	gs-sh	gs-sh	
periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family protein			periplasmic nitrate reductase subunit NapC		CDS	Cytochrome c-type protein NapC			base_tigr	0	0	
diheme cytochrome c NapB		napB	periplasmic nitrate reductase subunit NapB		CDS	Nitrate reductase cytochrome c550-type subunit			pfam-sh	0	0	
ferredoxin-type , NapH/MauN family protein			periplasmic nitrate reductase subunit NapH		CDS	Polyferredoxin NapH (periplasmic nitrate reductase)			base_tigr	gs-sh	gs-sh	
mauM/NapG ferredoxin-type family protein			periplasmic nitrate reductase subunit NapG		CDS	Ferredoxin-type protein NapG (periplasmic nitrate reductase)			base_tigr	0	0	
periplasmic nitrate reductase, large subunit	1.7.99.4	napA	periplasmic nitrate reductase subunit NapA apoprotein	1.7.99.4	CDS	Periplasmic nitrate reductase precursor	1.7.99.4		base_ec	base_ec	base_ec	
napD family protein			periplasmic nitrate reductase chaperone NapD		CDS	Periplasmic nitrate reductase component NapD			gs-sh	gs-sh	pfam-sh	
ferredoxin-type protein NapF		napF	periplasmic nitrate reductase maturation protein NapF		CDS	Ferredoxin-type protein NapF (periplasmic nitrate reductase)			base_tigr	gs-sh	gs-sh	
putative triose phosphate isomerase monomer			hypothetical protein		CDS	FIG00640962: hypothetical protein			base_one HP	0	base_one HP	
ecotin family protein			Serine protease inhibitor ecotin		CDS	"Proteinase inhibitor I11, ecotin precursor"			0	tf_idf	0	
malate dehydrogenase	1.1.5.4	mqo	malate:quinone-oxidoreductase	1.1.5.4	CDS	Malate:quinone oxidoreductase	1.1.5.4		base_tigr	base_ec	base_ec	
ABC transporter ATP-binding protein YojI		yojI	cyclic peptide transporter		CDS	Putative ATP-binding component of a transport system			gs-sh	orth	orth	
alkylated DNA repair protein AlkB		alkB	DNA-N1-methyladenine dioxygenase (EC 1.14.11.-)	1.14.11.-	CDS	Alkylated DNA repair protein AlkB			base_tigr	lit-s	map	
bifunctional transcriptional activator/DNA repair enzyme Ada	2.1.1.63	ada	DNA-O6-methylguanine--protein-cysteine S-methyltransferase (EC 2.1.1.63)/Transcriptional regulator Ada	2.1.1.63	CDS	ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase	2.1.1.63		base_ec	base_ec	base_ec	
thiamine biosynthesis lipoprotein ApbE		apbE	Membrane-associated lipoprotein involved in thiamine biosynthesis		CDS	Thiamin biosynthesis lipoprotein ApbE			gs-sh	pfam-sh	gs-sh	
outer membrane protein C		ompC	Outer membrane protein (porin)		CDS	Outer membrane protein C precursor			gs-sh	orth	tf_idf	
sensor-like histidine kinase RcsD	2.7.13.3	rcsD	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Hpt domain.	2.7.13.3	CDS	Two-component sensor protein RcsD	2.7.3.-		base_ec	0	0	
capsular synthesis regulator component B		rcsB	two component transcriptional regulator, LuxR family		CDS	DNA-binding capsular synthesis response regulator RcsB			gs-sh	0	0	
sensor kinase protein RcsC	2.7.13.3	rcsC	Signal transduction histidine kinase	2.7.13.3	CDS	Two-component sensor protein RcsC	2.7.3.-		base_ec	pfam-sh	map	
sensory box protein			PAS/PAC sensor signal transduction histidine kinase (EC 2.7.13.3)	2.7.13.3	CDS	Sensory histidine kinase AtoS			base_tigr	map	gs-sh	
AAA domain family protein			Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains		CDS	Acetoacetate metabolism regulatory protein AtoC			pfam-sh	map	gs-sh	
acetate CoA-transferase subunit alpha	2.8.3.8	atoD	3-oxoacid CoA-transferase, A subunit	2.8.3.8	CDS	"Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit"	2.8.3.8		base_ec	base_ec	base_ec	
acetate CoA-transferase subunit beta	2.8.3.8	atoA	3-oxoacid CoA-transferase, B subunit		CDS	"Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit"	2.8.3.8		gs-sh	base_ec	map	
short-chain fatty acids transporter		atoE	TIGR00366 family protein		CDS	Short chain fatty acids transporter			gs-sh	gs-sh	0	
acetyl-CoA C-acetyltransferase family protein			acetyl-CoA acetyltransferase (EC 2.3.1.9)	2.3.1.9	CDS	Acetyl-CoA acetyltransferase	2.3.1.9		base_tigr	map	base_ec	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00638718: hypothetical protein			base_one HP	base_one HP	lit-s	
stage II sporulation family protein			Predicted secreted protein		CDS	FIG00638358: hypothetical protein			0	0	0	
alpha-2-macroglobulin family domain protein			hypothetical protein		CDS	Putative membrane protein			base_one HP	0	base_one HP	
alpha-2-macroglobulin N-terminal region family protein			Large extracellular alpha-helical protein		CDS	Putative membrane protein			0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00638487: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00638699: hypothetical protein			base_one HP	base_one HP	lit-s	
DNA gyrase, A subunit	5.99.1.3	gyrA	DNA gyrase subunit A (EC 5.99.1.3)	5.99.1.3	CDS	DNA gyrase subunit A	5.99.1.3		base_tigr	base_ec	base_ec	
3-demethylubiquinone-9 3-O-methyltransferase	2.1.1.64	ubiG	3-demethylubiquinone-9 3-methyltransferase	2.1.1.64	CDS	3-demethylubiquinol 3-O-methyltransferase	2.1.1.64		base_tigr	base_ec	base_ec	
outer membrane autotransporter barrel domain protein			outer membrane autotransporter barrel domain/autotransporter-associated beta strand repeat		CDS	"COG3468: Type V secretory pathway, adhesin AidA"			0	0	0	
ribonucleoside-diphosphate reductase, alpha subunit	1.17.4.1		ribonucleoside-diphosphate reductase class Ia alpha subunit (EC 1.17.4.1)	1.17.4.1	CDS	"Ribonucleotide reductase of class Ia (aerobic), alpha subunit"	1.17.4.1		base_tigr	base_ec	base_ec	
ribonucleoside-diphosphate reductase 1 subunit beta	1.17.4.1	nrdB	ribonucleoside-diphosphate reductase class Ia beta subunit (EC 1.17.4.1)	1.17.4.1	CDS	"Ribonucleotide reductase of class Ia (aerobic), beta subunit"	1.17.4.1		base_ec	base_ec	base_ec	
2Fe-2S iron-sulfur cluster binding domain protein			Ferredoxin		CDS	FIG001676: Ferredoxin			0	0	lit-s	
protein inaA		inaA	Lipopolysaccharide kinase (Kdo/WaaP) family.		CDS	Protein inaA			gs-sh	lit-s	gs-sh	
conserved hypothetical protein			hypothetical protein		CDS	LysR family transcriptional regulator STM2281			lit-s	base_one HP	base_one HP	
glycerophosphoryl diester phosphodiesterase	3.1.4.46	glpQ	Glycerophosphoryl diester phosphodiesterase	3.1.4.46	CDS	"Glycerophosphoryl diester phosphodiesterase, periplasmic"	3.1.4.46		base_ec	base_ec	base_ec	
glycerol-3-phosphate transporter		glpT	glycerol-3-phosphate transporter		CDS	Glycerol-3-phosphate transporter			base_lit-s	lit-s	lit-s	
glycerol-3-phosphate dehydrogenase, anaerobic, A subunit	1.1.5.3	glpA	glycerol 3-phosphate dehydrogenase (quinone) subunit A (EC 1.1.5.3)	1.1.5.3	CDS	Anaerobic glycerol-3-phosphate dehydrogenase subunit A	1.1.5.3		base_tigr	base_ec	base_ec	
glycerol-3-phosphate dehydrogenase, anaerobic, B subunit	1.1.5.3	glpB	glycerol 3-phosphate dehydrogenase (quinone) subunit B (EC 1.1.5.3)	1.1.5.3	CDS	Anaerobic glycerol-3-phosphate dehydrogenase subunit B	1.1.5.3		base_tigr	base_ec	base_ec	
glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	1.1.5.3	glpC	glycerol 3-phosphate dehydrogenase (quinone) subunit C (EC 1.1.5.3)	1.1.5.3	CDS	Anaerobic glycerol-3-phosphate dehydrogenase subunit C	1.1.5.3		base_tigr	base_ec	base_ec	
conserved hypothetical family protein			conserved hypothetical protein (putative transposase or invertase)		CDS	Uncharacterized protein YfaD			base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
2-keto-3-deoxy-L-rhamnonate aldolase	4.1.2.n3	rhmA	2,4-dihydroxyhept-2-enedioate aldolase (EC 4.1.2.-)	4.1.2.-	CDS	"COG3836: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase"			gs-sh	0	0	
inner membrane transport protein RhmT		rhmT	Sugar phosphate permease		CDS	L-rhamnonate transporter (predicted by genome context)			gs-sh	0	0	
L-rhamnonate dehydratase	4.2.1.90	rhmD	L-rhamnonate dehydratase (EC 4.2.1.90)	4.2.1.90	CDS	L-rhamnonate dehydratase	4.2.1.90		base_ec	base_lit-s	base_ec	
conserved hypothetical protein			transcriptional regulator, IclR family		CDS	putative regulator			base_one HP	base_one HP	orth	
cinA-like protein		yfaY	molybdenum cofactor synthesis domain/competence/damage-inducible protein CinA N-terminal domain		CDS	COG1058: Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA			gs-sh	gs-sh	gs-sh	
yfaZ family protein			YfaZ precursor.		CDS	Uncharacterized protein YfaZ precursor			gs-sh	map	lit-s	
NUDIX domain protein			ADP-ribose pyrophosphatase	3.6.1.-	CDS	Pyrimidine deoxynucleoside triphosphate (dYTP) pyrophosphohydrolase YfoO			0	0	0	
histidine phosphatase super family protein			Fructose-2,6-bisphosphatase		CDS	Polymyxin resistance protein PmrG; Ais protein			0	0	0	
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase	2.6.1.87	arnB	Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis	2.6.1.87	CDS	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase	2.6.1.-		base_ec	base_lit-s	map	
undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	2.7.8.30	arnC	Glycosyltransferases involved in cell wall biogenesis	2.7.8.30	CDS	"Polymyxin resistance protein ArnC, glycosyl transferase"	2.4.-.-		base_ec	0	0	
bifunctional polymyxin resistance protein ArnA	1.1.1.305	arnA	Methionyl-tRNA formyltransferase	2.1.2.13, 1.1.1.305	CDS	"Polymyxin resistance protein ArnA_DH, UDP-glucuronic acid decarboxylase / Polymyxin resistance protein ArnA_FT, UDP-4-amino-4-deoxy-L-arabinose formylase"	4.1.1.-, 2.1.2.-		base_ec-d	0	0	
putative 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD			Predicted xylanase/chitin deacetylase	3.5.-	CDS	"Polymyxin resistance protein PmrJ, predicted deacetylase"			0	0	0	
undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase	2.4.2.43	arnT	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family	2.4.2.43	CDS	"Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB"			base_ec	0	0	
putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE			Membrane transporters of cations and cationic drugs		CDS	"Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase"			0	0	0	
signal transduction protein pmrD		pmrD	Polymyxin resistance protein PmrD.		CDS	Polymyxin resistance protein PmrD			gs-sh	map	lit-s	
putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF			hypothetical protein		CDS	Polymyxin resistance protein PmrM			base_one HP	0	base_one HP	
O-succinylbenzoate-CoA ligase	6.2.1.26	menE	2-succinylbenzoyl-CoA synthetase (EC 6.2.1.26)	6.2.1.26	CDS	O-succinylbenzoic acid--CoA ligase	6.2.1.26		base_tigr	base_ec	base_ec	
o-succinylbenzoate synthase	4.2.1.113	menC	O-succinylbenzoate synthase (EC 4.2.1.113)	4.2.1.113	CDS	O-succinylbenzoate synthase	4.2.1.113		base_tigr	base_ec	base_ec	
naphthoate synthase	4.1.3.36	menB	1,4-Dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36)	4.1.3.36	CDS	Naphthoate synthase	4.1.3.36		base_tigr	base_ec	base_ec	
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	4.2.99.20	menH	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)	4.2.99.20	CDS	"2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase"	4.2.99.20		base_tigr	base_ec	base_ec	
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase	2.2.1.9	menD	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase (EC 2.2.1.9)	2.2.1.9	CDS	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase	2.2.1.9		base_tigr	base_lit-s	base_ec	
menaquinone-specific isochorismate synthase	5.4.4.2	menF	isochorismate synthase (EC 5.4.4.2)	5.4.4.2	CDS	Menaquinone-specific isochorismate synthase	5.4.4.2		base_ec	base_ec	base_ec	
protein elaB		elaB	Uncharacterized conserved protein		CDS	ElaB protein			gs-sh	lit-s	0	
acetyltransferase family protein			Predicted acyltransferase		CDS	ElaA protein			orth	gs-sh	gs-sh	
ribonuclease Z	3.1.26.11	rnz	RNAse Z (EC 3.1.26.11)	3.1.26.11	CDS	Ribonuclease Z	3.1.26.11		base_ec	base_ec	base_ec	
protease elaD	3.4.22.-	elaD	Protease, Ulp1 family		CDS	ElaD protein			gs-sh	orth	map	
conserved hypothetical protein			Uncharacterized protein containing a von Willebrand factor type A (vWA) domain		CDS	FIG00637883: hypothetical protein			base_one HP	base_one HP	0	
peptidase M20/M25/M40 family protein			Predicted aminopeptidases		CDS	FIG00639255: hypothetical protein			0	0	0	
protein yfbM		yfbM	Domain of unknown function (DUF1877).		CDS	FIG00638014: hypothetical protein			gs-sh	0	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00640159: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00640594: hypothetical protein			lit-s	base_one HP	base_one HP	
tetratricopeptide repeat family protein			Thioredoxin domain-containing protein		CDS	FIG00639247: hypothetical protein			0	0	0	
NADH-quinone oxidoreductase subunit N	1.6.99.5	nuoN	NADH dehydrogenase subunit N (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain N	1.6.5.3		base_ec-d	base_ec-d	base_ec	
NADH-quinone oxidoreductase subunit M	1.6.99.5	nuoM	NADH dehydrogenase subunit M (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain M	1.6.5.3		base_ec-d	base_ec-d	base_ec	
NADH-quinone oxidoreductase subunit L	1.6.99.5	nuoL	NADH dehydrogenase subunit L (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain L	1.6.5.3		base_ec-d	base_ec-d	base_ec	
NADH-quinone oxidoreductase subunit K	1.6.99.5	nuoK	NADH dehydrogenase subunit K (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain K	1.6.5.3		base_ec-d	base_ec-d	base_ec	
NADH-quinone oxidoreductase subunit J	1.6.99.5	nuoJ	NADH dehydrogenase subunit J (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain J	1.6.5.3		base_ec-d	base_ec-d	base_ec	
NADH-quinone oxidoreductase, chain I family protein			NADH dehydrogenase subunit I (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain I	1.6.5.3		base_tigr	map	base_ec	
NADH-quinone oxidoreductase subunit H	1.6.99.5	nuoH	NADH dehydrogenase subunit H (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain H	1.6.5.3		base_ec-d	base_ec-d	base_ec	
NADH dehydrogenase (quinone), G subunit	1.6.99.5	nuoG	NADH dehydrogenase subunit G (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain G	1.6.5.3		base_tigr	base_ec-d	base_ec	
NADH oxidoreductase (quinone), F subunit	1.6.99.5	nuoF	NADH dehydrogenase subunit F (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain F	1.6.5.3		base_tigr	base_ec-d	base_ec	
NADH-quinone oxidoreductase subunit E	1.6.99.5	nuoE	NADH dehydrogenase subunit E (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain E	1.6.5.3		base_ec-d	base_ec-d	base_ec	
NADH-quinone oxidoreductase subunit C/D	1.6.99.5	nuoC	NADH dehydrogenase subunit C/NADH dehydrogenase subunit D	1.6.5.3,1.6.5.3, 1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone oxidoreductase chain D	1.6.5.3, 1.6.5.3		base_ec-d	base_ec-d	base_ec-d	
NADH-quinone oxidoreductase subunit B	1.6.99.5	nuoB	NADH dehydrogenase subunit B (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain B	1.6.5.3		base_ec-d	base_ec-d	base_ec	
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 family protein			NADH dehydrogenase subunit A (EC 1.6.5.3)	1.6.5.3	CDS	NADH ubiquinone oxidoreductase chain A	1.6.5.3		0	0	base_ec	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
transcriptional regulator LrhA		lrhA	Transcriptional regulator		CDS	LysR family transcriptional regulator lrhA			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Aspartate/tyrosine/aromatic aminotransferase	2.6.1.2, 2.6.1.66	CDS	Alanine transaminase	2.6.1.2		base_one HP	base_one HP	base_ec-d	
5'-nucleotidase yfbR	3.1.3.5	yfbR	Predicted hydrolases of HD superfamily	3.1.3.5	CDS	"Nucleotidase YfbR, HD superfamily"			base_ec	0	0	
citrate transporter family protein			Di- and tricarboxylate transporters		CDS	Putative transport protein			0	0	0	
HAD hydrolase, IA, variant 1 family protein			haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E		CDS	Putative phosphatase YfbT			0	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00361523: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
acetate kinase	2.7.2.1	ackA	acetate kinase (EC 2.7.2.1)	2.7.2.1	CDS	Acetate kinase	2.7.2.1		base_tigr	base_ec	base_ec	
phosphate acetyltransferase	2.3.1.8	pta	phosphotransacetylase (EC 2.3.1.8)	2.3.1.8	CDS	Phosphate acetyltransferase	2.3.1.8		base_tigr	base_ec	base_ec	
C4-dicarboxylate anaerobic carrier family protein			Predicted membrane protein		CDS	Putative S-transferase			orth	orth	orth	
conserved hypothetical protein			Isopentenyldiphosphate isomerase		CDS	Putative Nudix hydrolase YfcD	3.6.-.-		base_one HP	base_one HP	0	
phosphodiesterase yfcE	3.1.4.-	yfcE	phosphoesterase, MJ0936 family		CDS	Phosphodiesterase yfcE	3.1.4.-		gs-sh	lit-s	gs-sh	
conserved hypothetical protein			Glutathione S-transferase		CDS	"Probable glutathione S-transferase, YfcF homolog"	2.5.1.18		base_one HP	base_one HP	0	
putative disulfide bond reductase yfcG			Glutathione S-transferase	2.5.1.18	CDS	"Probable glutathione S-transferase, YfcG homolog"	2.5.1.18		gs-sh	map	base_ec	
D-erythro-7,8-dihydroneopterin triphosphate epimerase	5.-.-.-	folX	FolB domain	5.-	CDS	Dihydroneopterin triphosphate epimerase			gs-sh	0	0	
NAD dependent epimerase/dehydratase family protein			TIGR01777 family protein		CDS	"Cell division inhibitor Slr1223 (YfcH in EC), contains epimerase/dehydratase and DUF1731 domains"			0	0	0	
conserved hypothetical family protein			conserved hypothetical protein (putative transposase or invertase)		CDS	COG1196: Chromosome segregation ATPases			base_tigr	0	0	
ABC transporter family protein			L-histidine ABC transporter ATP-binding protein/L-arginine ABC transporter ATP-binding protein/L-lysine ABC transporter ATP-binding protein/L-ornithine ABC transporter ATP-binding protein	3.6.3.21	CDS	"Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1)"			0	0	0	
histidine transport system permease protein hisM		hisM	L-histidine ABC transporter membrane protein/L-arginine ABC transporter membrane protein/L-lysine ABC transporter membrane protein/L-ornithine ABC transporter membrane protein		CDS	"Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1)"			gs-sh	gs-sh	gs-sh	
histidine transport system permease protein hisQ		hisQ	L-histidine ABC transporter membrane protein/L-arginine ABC transporter membrane protein/L-lysine ABC transporter membrane protein/L-ornithine ABC transporter membrane protein		CDS	"Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1)"			gs-sh	gs-sh	map	
histidine-binding periplasmic protein		hisJ	L-histidine-binding protein		CDS	"Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1)"			gs-sh	gs-sh	gs-sh	
lysine-arginine-ornithine-binding periplasmic protein		argT	L-arginine-binding protein/L-lysine-binding protein/L-ornithine-binding protein		CDS	Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1)			gs-sh	0	0	
polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein	4.1.1.-		3-octaprenyl-4hydroxybenzoate decarboxylase (EC 4.1.1.-)	4.1.1.-	CDS	3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX	4.1.1.-		base_tigr	map	gs-sh	
amidophosphoribosyltransferase	2.4.2.14	purF	amidophosphoribosyltransferase (EC 2.4.2.14)	2.4.2.14	CDS	Amidophosphoribosyltransferase	2.4.2.14		base_tigr	base_ec	base_ec	
colicin V production protein		cvpA	Uncharacterized membrane protein, required for colicin V production		CDS	Colicin V production protein			gs-sh	lit-s	tf_idf	
sporulation related domain protein			Uncharacterized protein conserved in bacteria		CDS	DedD protein			0	0	0	
bifunctional protein folC	6.3.2.12	folC	folylpolyglutamate synthase/dihydrofolate synthase	6.3.2.12, 6.3.2.17	CDS	Dihydrofolate synthase / Folylpolyglutamate synthase	6.3.2.12, 6.3.2.17		base_ec-d	base_ec-d	base_ec	
acetyl-CoA carboxylase, carboxyl transferase, beta subunit	6.4.1.2	accD	acetyl-CoA carboxylase carboxyltransferase subunit alpha	6.4.1.2	CDS	Acetyl-coenzyme A carboxyl transferase beta chain	6.4.1.2		base_tigr	base_ec	base_ec	
protein dedA		dedA	Uncharacterized membrane-associated protein		CDS	DedA protein			gs-sh	lit-s	gs-sh	
tRNA pseudouridine(38-40) synthase	5.4.99.12	truA	pseudouridylate synthase I	5.4.99.12	CDS	tRNA pseudouridine synthase A	4.2.1.70		base_tigr	base_ec-d	base_ec-d	
semialdehyde dehydrogenase, NAD binding domain protein			Aspartate-semialdehyde dehydrogenase		CDS	Aspartate-semialdehyde dehydrogenase	1.2.1.11		0	0	base_lit-s	
erythronate-4-phosphate dehydrogenase	1.1.1.290	pdxB	4-phosphoerythronate dehydrogenase (EC 1.1.1.290)	1.1.1.290	CDS	Erythronate-4-phosphate dehydrogenase	1.1.1.290		base_ec	base_ec	base_ec	
conserved hypothetical protein			Arabinose efflux permease		CDS	"Transporter, putative"			base_one HP	base_one HP	0	
flagellar regulator flk		flk	hypothetical protein		CDS	Cell division protein			base_one HP	orth	base_one HP	
3-oxoacyl-[acyl-carrier-protein] synthase 1	2.3.1.41	fabB	3-oxoacyl-[acyl-carrier-protein] synthase I (EC 2.3.1.41)	2.3.1.41	CDS	"3-oxoacyl-[acyl-carrier-protein] synthase, KASI"	2.3.1.41		base_ec	base_ec	base_ec	
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC	1.5.-.-	mnmC	tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain	1.5.-, 2.1.1.61	CDS	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / FAD-dependent cmnm(5)s(2)U34 oxidoreductase	2.1.1.61		gs-sh	gs-sh	gs-sh	
yfcL family protein			YfcL protein.		CDS	FIG00639460: hypothetical protein			lit-s	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Putative transporting ATPase			base_one HP	base_one HP	0	
conserved hypothetical protein			Predicted permeases		CDS	Putative membrane protein YfcA			base_one HP	base_one HP	0	
penicillin-insensitive murein endopeptidase	3.4.24.-	mepA	murein endopeptidase. Metallo peptidase. MEROPS family M74	3.4.24.-	CDS	Murein endopeptidase			gs-sh	gs-sh	map	
chorismate synthase	4.2.3.5	aroC	chorismate synthase (EC 4.2.3.5)	4.2.3.5	CDS	Chorismate synthase	4.2.3.5		base_tigr	base_ec	base_ec	
-(glutamine-N5) methyltransferase, ribosomal protein L3-specific	2.1.1.-	prmB	[LSU ribosomal protein L3P]-glutamine N5-methyltransferase	2.1.1.72,2.1.1.-	CDS	"Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p"			gs-sh	0	0	
smr domain protein			Uncharacterized protein conserved in bacteria		CDS	FIG001674: hypothetical protein			0	0	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF2544).		CDS	Uncharacterized protein YadU in stf fimbrial cluster			base_one HP	base_one HP	0	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	Minor fimbrial subunit StfG			0	0	0	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	Minor fimbrial subunit StfF			0	0	0	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	predicted fimbrial-like adhesin protein			0	0	0	
gram-negative pili assembly chaperone, C-terminal domain protein			P pilus assembly protein, chaperone PapD		CDS	Periplasmic fimbrial chaperone StfD			0	0	0	
type VII secretion system (T7SS), usher family protein			P pilus assembly protein, porin PapC		CDS	Fimbriae usher protein StfC			0	0	0	
type VII secretion system (T7SS), usher family protein			P pilus assembly protein, porin PapC		CDS	Fimbriae usher protein StfC			0	0	0	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	Major fimbrial subunit StfA			0	0	0	
phosphohistidine phosphatase SixA	3.1.3.-	sixA	phosphohistidine phosphatase, SixA	3.1.3.-	CDS	Phosphohistidine phosphatase SixA			base_tigr	lit-s	lit-s	
fatty oxidation complex, alpha subunit FadJ	4.2.1.17	fadJ	fatty oxidation complex, alpha subunit FadJ	1.1.1.35, 4.2.1.17, 5.1.2.3	CDS	Enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase	4.2.1.17, 1.1.1.35, 5.1.2.3		base_lit-s	base_ec-d	base_ec-d	
acetyl-CoA C-acyltransferase FadI	2.3.1.16	fadI	3-ketoacyl-CoA thiolase	2.3.1.16	CDS	3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase	2.3.1.16, 2.3.1.9		base_ec	base_ec-d	base_ec-d	
conserved hypothetical family protein			conserved hypothetical protein		CDS	FIG00637865: hypothetical protein			base_one HP	lit-s	base_one HP	
outer membrane transport family protein			Long-chain fatty acid transport protein		CDS	Long-chain fatty acid transport protein			0	0	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00639023: hypothetical protein			lit-s	base_one HP	base_one HP	
putative phospholipid-binding lipoprotein mlaA			Surface lipoprotein		CDS	Lipoprotein			gs-sh	0	0	
inner membrane protein yfdC		yfdC	Formate/nitrite family of transporters		CDS	putative transport			gs-sh	gs-sh	orth	
putative prophage CPS-53 integrase			Integrase		CDS	putative prophage Sf6-like integrase			orth	tf_idf	tf_idf	
conserved hypothetical protein			Glycosyltransferases involved in cell wall biogenesis		CDS	Bactoprenol glucosyl transferase GtrB	2.4.1.-		base_one HP	base_one HP	0	
putative membrane protein			hypothetical protein		CDS	putative ligase			base_one HP	0	base_one HP	
caudovirales tail fibre assembly family protein			Caudovirales tail fibre assembly protein.		CDS	hypothetical protein			lit-s	base_one HP	base_one HP	
caudovirales tail fibre assembly family protein			Caudovirales tail fibre assembly protein.		CDS	Tail fiber assembly protein			lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	Phage tail fiber protein			lit-s	base_one HP	base_one HP	
phage N-6-adenine-methyltransferase	2.1.1.72		phage N-6-adenine-methyltransferase		CDS	DNA adenine methylase			base_lit-s	0	0	
perC transcriptional activator family protein			PerC transcriptional activator.		CDS				lit-s	base_one miss	base_one miss	
conserved hypothetical protein			hypothetical protein		CDS	Primosomal protein I			lit-s	base_one HP	base_one HP	
putative phage O domain protein						FIG00644878: hypothetical protein			base_one miss	0	base_one miss	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638873: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00642676: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Predicted hydrolases of HD superfamily		CDS	Hypothetical protein yfdR			base_one HP	base_one HP	gs-sh	
conserved hypothetical protein			hypothetical protein		CDS	Eae protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00643426: hypothetical protein			lit-s	base_one HP	base_one HP	
prophage CP4-57 regulatory family protein			transcriptional regulator, AlpA family		CDS	Gene 18 protein			0	0	0	
D-serine deaminase transcriptional activator		dsdC	D-serine deaminase transcriptional activator		CDS	D-serine dehydratase transcriptional activator			base_lit-s	0	0	
dsdX permease		dsdX	D-serine permease DsdX (TC 2.A.8.1.5)		CDS	D-serine permease DsdX			gs-sh	map	lit-s	
D-serine ammonia-lyase	4.3.1.18	dsdA	D-serine ammonia-lyase (EC 4.3.1.18)	4.3.1.18	CDS	D-serine dehydratase	4.3.1.18		base_tigr	base_ec	base_ec	
multidrug resistance protein B		emrB	drug resistance transporter, EmrB/QacA subfamily		CDS	Inner membrane component of tripartite multidrug resistance system			gs-sh	0	0	
efflux pump membrane family protein			efflux pump membrane protein (multidrug resistance protein A)		CDS	Membrane fusion component of tripartite multidrug resistance system			base_tigr	0	0	
positive transcription regulator evgA		evgA	two component transcriptional regulator, LuxR family		CDS	Positive transcription regulator EvgA			gs-sh	lit-s	orth	
sensor protein evgS	2.7.13.3	evgS	amino acid-binding domain sensor hybrid histidine kinase (EC 2.7.13.3)	2.7.13.3	CDS	Hybrid sensory histidine kinase in two-component regulatory system with EvgA			base_ec	0	0	
coA-transferase III family protein			Predicted acyl-CoA transferases/carnitine dehydratase		CDS	YfdE protein			0	0	0	
membrane transport family protein			Predicted permeases		CDS	putative receptor protein			0	0	0	
oxalyl-CoA decarboxylase	4.1.1.8	oxc	oxalyl-CoA decarboxylase	4.1.1.8	CDS	Oxalyl-CoA decarboxylase	4.1.1.8		base_lit-s	base_ec	base_ec	
formyl-CoA transferase	2.8.3.16	frc	formyl-CoA transferase	2.8.3.16	CDS	Formyl-coenzyme A transferase	2.8.3.16		base_lit-s	base_ec	base_ec	
protein yfdX		yfdX	YfdX protein.		CDS	FIG00638143: hypothetical protein			lit-s	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF2545).		CDS	FIG00638164: hypothetical protein			base_one HP	base_one HP	lit-s	
lipid A biosynthesis lauroyl acyltransferase	2.3.1.-	htrB	lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase	2.3.1.-	CDS	Lipid A biosynthesis lauroyl acyltransferase	2.3.1.-		gs-sh	lit-s	tf_idf	
aminotransferase class I and II family protein			Aspartate/tyrosine/aromatic aminotransferase	2.6.1.-	CDS	Uncharacterized PLP-dependent aminotransferase YfdZ			0	0	0	
histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein			Putative regulator of cell autolysis	2.7.13.3	CDS	Autolysis histidine kinase LytS			0	0	gs-sh	
response regulator		ypdB	two component transcriptional regulator, LytTR family		CDS	Hypothetical response regulatory protein ypdB			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			transcriptional regulator, AraC family		CDS	Putative HTH-type transcriptional regulator ypdC			base_one HP	base_one HP	gs-sh	
multiphosphoryl transfer protein 1	2.7.1.-	fryA	phosphoenolpyruvate-protein phosphotransferase	2.7.1.69	CDS	Phosphoenolpyruvate-protein phosphotransferase of PTS system	2.7.3.9		gs-sh	0	base_ec-d	
aminopeptidase ypdE	3.4.11.-	ypdE	Cellulase M and related proteins		CDS	Nondeblocking aminopeptidase YpdE (X-X-[^PR]- specific)			gs-sh	0	0	
aminopeptidase ypdF	3.4.11.-	ypdF	Xaa-Pro aminopeptidase	3.4.11.-	CDS	"Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)"			gs-sh	0	0	
fructose-like permease IIC component 1		fryC	PTS system unknown substrate IIC component, Fru family (TC 4.A.2.1.11)		CDS	"PTS system, fructose-specific IIBC component"	2.7.1.69		gs-sh	0	0	
fructose-like phosphotransferase enzyme IIB component 1	2.7.1.69	fryB	PTS system unknown substrate IIB component, Fru family (TC 4.A.2.1.11)	2.7.1.69	CDS	"PTS system nitrogen-specific IIA component, PtsN"			base_ec	gs-sh	gs-sh	
glucokinase	2.7.1.2	glk	glucokinase (EC 2.7.1.2)	2.7.1.2	CDS	Glucokinase	2.7.1.2		base_tigr	base_ec	base_ec	
voltage gated chloride channel family protein			Chloride channel protein EriC		CDS	Chloride channel protein			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2502).		CDS	FIG00639029: hypothetical protein			base_one HP	base_one HP	lit-s	
manganese transport protein mntH		mntH	NRAMP (natural resistance-associated macrophage protein) metal ion transporters		CDS	Manganese transport protein MntH			gs-sh	lit-s	map	
nucleoside permease nupC		nupC	nucleoside transporter		CDS	Nucleoside permease NupC			gs-sh	lit-s	map	
transposase DDE domain protein			FOG: Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
EAL domain protein			diguanylate cyclase/phosphodiesterase		CDS	FIG00638309: hypothetical protein			0	0	0	
conserved hypothetical protein			Putative transcription regulator (DUF1323).		CDS	Putative negative regulator			base_one HP	base_one HP	0	
helix-turn-helix family protein			Putative transcription regulator (DUF1323).		CDS	FIG00638165: hypothetical protein			0	0	0	
glutamate--tRNA ligase	6.1.1.17	gltX	glutamyl-tRNA synthetase (EC 6.1.1.17)	6.1.1.17	CDS	Glutamyl-tRNA synthetase	6.1.1.17		base_tigr	base_ec	base_ec	
HTH-type transcriptional regulator xapR		xapR	transcriptional regulator, LysR family		CDS	"Xanthosine operon regulatory protein XapR, LysR family"			gs-sh	gs-sh	gs-sh	
xapX domain protein						FIG00638837: hypothetical protein			base_one miss	0	base_one miss	
xanthosine permease		xapB	nucleoside transporter		CDS	Xanthosine permease			gs-sh	lit-s	orth	
xanthosine phosphorylase	2.4.2.1	xapA	xanthosine phosphorylase	2.4.2.-	CDS	Xanthosine phosphorylase	2.4.2.1		base_lit-s	base_ec	lit-s	
nucleoside-specific channel-forming , Tsx family protein			Nucleoside-specific channel-forming protein, Tsx.		CDS	Putative exported protein precursor			lit-s	0	0	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	LysR family transcriptional regulator YfeR			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Putative cytoplasmic protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Predicted Na+-dependent transporter		CDS	Putative cytochrome oxidase			base_one HP	base_one HP	0	
DNA ligase, NAD-dependent	6.5.1.2	ligA	DNA ligase, NAD-dependent	6.5.1.2	CDS	DNA ligase	6.5.1.2		base_lit-s	base_ec	base_ec	
cell division protein ZipA		zipA	cell division protein ZipA		CDS	Cell division protein ZipA			base_lit-s	lit-s	lit-s	
protein CysZ		cysZ	Uncharacterized protein involved in cysteine biosynthesis		CDS	"Sulfate transporter, CysZ-type"			gs-sh	0	0	
cysteine synthase A	2.5.1.47	cysK	cysteine synthase (EC 2.5.1.47)	2.5.1.47	CDS	Cysteine synthase	2.5.1.47		base_ec	base_ec	base_ec	
phosphocarrier protein HPr	2.7.11.-	ptsH	Phosphotransferase System HPr (HPr) Family		CDS	"Phosphotransferase system, phosphocarrier protein HPr"			gs-sh	tf_idf	map	
phosphoenolpyruvate-protein phosphotransferase	2.7.3.9	ptsI	phosphoenolpyruvate--protein phosphotransferase (EC 2.7.3.9)	2.7.3.9	CDS	Phosphoenolpyruvate-protein phosphotransferase of PTS system	2.7.3.9		base_ec	base_ec	base_ec	
glucose-specific phosphotransferase enzyme IIA component	2.7.1.-	crr	PTS system D-glucose-specific IIA component, Glc family (TC 4.A.1.1.1)	2.7.1.69	CDS	"PTS system, glucose-specific IIA component"	2.7.1.69		gs-sh	orth	base_ec	
pyridoxal kinase	2.7.1.35		Pyridoxal kinase (EC 2.7.1.35)	2.7.1.35	CDS	Pyridoxal kinase	2.7.1.35		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638119: hypothetical protein			lit-s	base_one HP	base_one HP	
WGR domain protein			Uncharacterized protein conserved in bacteria		CDS	Molybdate metabolism regulator			0	orth	0	
cysteine synthase B	2.5.1.47	cysM	cysteine synthase B	2.5.1.47	CDS	Cysteine synthase B	2.5.1.47		base_lit-s	base_ec	base_ec	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
sulfate ABC transporter, ATP-binding family protein	3.6.3.25	cysA	sulfate ABC transporter, ATP-binding protein	3.6.3.25	CDS	Sulfate and thiosulfate import ATP-binding protein CysA	3.6.3.25		base_tigr	base_ec	base_ec	
sulfate ABC transporter, permease protein CysW		cysW	sulfate ABC transporter, permease protein CysW		CDS	Sulfate transport system permease protein CysW			base_lit-s	gs-sh	orth	
sulfate ABC transporter, permease protein CysT		cysT	sulfate ABC transporter, permease protein CysT		CDS	Sulfate transport system permease protein CysT			base_lit-s	gs-sh	tf_idf	
thiosulfate-binding protein		cysP	sulfate/thiosulfate-binding protein		CDS	Sulfate and thiosulfate binding protein CysP			gs-sh	0	0	
oxidoreductase ucpA	1.-.-.-	ucpA	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	3-oxoacyl-[acyl-carrier protein] reductase	1.1.1.100		gs-sh	0	0	
helix-turn-helix domain, rpiR family protein			transcriptional regulator, RpiR family		CDS	"Sialic acid utilization regulator, RpiR family"			gs-sh	gs-sh	gs-sh	
N-acetylmuramic acid 6-phosphate etherase		murQ	N-acetylmuramate 6-phosphate etherase	3.3.2.-	CDS	N-acetylmuramic acid 6-phosphate etherase	4.2.-.-		base_tigr	base_lit-s	map	
PTS system N-acetylmuramic acid-specific EIIBC component	2.7.1.69	murP	PTS system N-acetylmuramate-specific IIB component, Glc family (TC 4.A.1.2.7)/PTS system N-acetylmuramate-specific IIC component, Glc family (TC 4.A.1.2.7)		CDS	putative PTS enzyme II			gs-sh	0	0	
beta-lactamase family protein			Beta-lactamase class C and other penicillin binding proteins		CDS	Beta-lactamase class C and other penicillin binding proteins			0	0	base_lit-s	
dyp-type peroxidase family protein			Dyp-type peroxidase family		CDS	"Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup"			base_tigr	0	0	
conserved hypothetical protein			Protein of unknown function (DUF1131).		CDS	Predicted outer membrane lipoprotein YfeY			base_one HP	base_one HP	0	
inner membrane protein yfeZ		yfeZ	Protein of unknown function (DUF2919).		CDS	Inner membrane protein YfeZ			gs-sh	lit-s	0	
acetyltransferase family protein			Acetyltransferases		CDS	Acetyltransferase YpeA			0	0	0	
N-acetylmuramoyl-L-alanine amidase AmiA	3.5.1.28	amiA	N-acetylmuramoyl-L-alanine amidase	3.5.1.28	CDS	N-acetylmuramoyl-L-alanine amidase	3.5.1.28		base_ec	base_ec	base_lit-s	
coproporphyrinogen-III oxidase, aerobic	1.3.3.3	hemF	coproporphyrinogen oxidase (EC 1.3.3.3)	1.3.3.3	CDS	"Coproporphyrinogen III oxidase, aerobic"	1.3.3.3		base_ec	base_ec	base_ec	
bacterial regulatory helix-turn-helix s, AraC family protein			transcriptional regulator, AraC family		CDS	Ethanolamine operon regulatory protein			pfam-sh	map	orth	
ethanolamine utilization protein EutK		eutK	Carbon dioxide concentrating mechanism/carboxysome shell protein		CDS	Ethanolamine utilization polyhedral-body-like protein EutK			gs-sh	tf_idf	map	
ethanolamine utilization protein EutL		eutL	Ethanolamine utilization protein		CDS	Ethanolamine utilization polyhedral-body-like protein EutL			gs-sh	tf_idf	tf_idf	
ethanolamine ammonia-lyase light chain	4.3.1.7	eutC	Ethanolamine ammonia-lyase light chain (EC 4.3.1.7)	4.3.1.7	CDS	Ethanolamine ammonia-lyase light chain	4.3.1.7		base_ec	base_ec	base_ec	
ethanolamine ammonia-lyase heavy chain	4.3.1.7	eutB	Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7)	4.3.1.7	CDS	Ethanolamine ammonia-lyase heavy chain	4.3.1.7		base_ec	base_ec	base_ec	
phage integrase family protein			Integrase		CDS	putative prophage integrase			orth	0	0	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS				lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	CPZ-55 prophage; predicted protein			lit-s	base_one HP	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
AT hook motif family protein			AT hook motif.		CDS	hypothetical protein			lit-s	base_one HP	base_one HP	
putative d-sedoheptulose 7-phosphate isomerase			hypothetical protein		CDS	FIG00640748: hypothetical protein			base_one HP	0	base_one HP	
putative ilvM			hypothetical protein		CDS	CPZ-55 prophage; predicted protein			base_one HP	0	base_one HP	
putative predicted enzyme IIC component of PTS			hypothetical protein		CDS	CPZ-55 prophage; predicted protein			base_one HP	0	base_one HP	
putative cPZ-55 prophage; predicted protein			hypothetical protein		CDS	FIG00639312: hypothetical protein			base_one HP	0	base_one HP	
ethanolamine utilization EutA family protein			Reactivating factor of Adenosylcobalamin-dependent ethanolamine ammonia lyase		CDS	Ethanolamine utilization protein EutA			0	lit-s	0	
ethanolamine utilization , EutH family protein			Ethanolamine utilization protein		CDS	Ethanolamine permease			tf_idf	map	orth	
ethanolamine utilization protein EutG	1.1.-.-	eutG	acetaldehyde reductase EutG	1.1.1.-	CDS	Ethanolamine utilization protein EutG			gs-sh	lit-s	gs-sh	
ethanolamine utilization EutJ family protein			ethanolamine utilization protein EutJ family protein		CDS	Ethanolamine utilization protein EutJ			base_tigr	lit-s	lit-s	
aldehyde dehydrogenase family protein			acetaldehyde dehydrogenase	1.2.1.10	CDS	"Acetaldehyde dehydrogenase, ethanolamine utilization cluster"			0	0	0	
ethanolamine utilization protein eutN		eutN	Carbon dioxide concentrating mechanism/carboxysome shell protein		CDS	Ethanolamine utilization polyhedral-body-like protein EutN			gs-sh	0	0	
ethanolamine utilization protein EutM		eutM	Carbon dioxide concentrating mechanism/carboxysome shell protein		CDS	Ethanolamine utilization polyhedral-body-like protein EutM			gs-sh	0	0	
phosphate acetyltransferase	2.3.1.8	pta	phosphate acetyltransferase		CDS	"Phosphate acetyltransferase, ethanolamine utilization-specific"	2.3.1.8		base_lit-s	base_ec	tf_idf	
cobalamin adenosyltransferase family protein			Ethanolamine utilization cobalamin adenosyltransferase	2.5.1.17	CDS	"ATP:Cob(I)alamin adenosyltransferase, ethanolamine utilization"	2.5.1.17		tf_idf	map	base_ec	
ethanolamine utilization protein eutQ		eutQ	Ethanolamine utilization protein		CDS	Ethanolamine utilization protein EutQ			gs-sh	lit-s	tf_idf	
ethanolamine utilization protein, EutP		eutP	ethanolamine utilization protein, EutP		CDS	Ethanolamine utilization protein EutP			base_lit-s	lit-s	lit-s	
ethanolamine utilization protein EutS		eutS	Ethanolamine utilization protein		CDS	Ethanolamine utilization polyhedral-body-like protein EutS			gs-sh	tf_idf	tf_idf	
NADP-dependent malic enzyme	1.1.1.40	maeB	allosteric NADP-dependent malic enzyme (EC 1.1.1.40)	1.1.1.40	CDS	NADP-dependent malic enzyme	1.1.1.40		base_ec	base_lit-s	base_ec	
transaldolase	2.2.1.2	tal	transaldolase (EC 2.2.1.2)	2.2.1.2	CDS	Transaldolase	2.2.1.2		base_tigr	base_ec	base_ec	
transketolase	2.2.1.1	tkt	transketolase, bacterial and yeast	2.2.1.1	CDS	Transketolase	2.2.1.1		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF1176).		CDS	Putative exported protein			base_one HP	base_one HP	0	
GDP-mannose pyrophosphatase nudK	3.6.1.-	nudK	nudix-type nucleoside diphosphatase, YffH/AdpP family	3.6.1.-	CDS	GDP-mannose pyrophosphatase YffH			gs-sh	0	0	
glutamate synthase, small subunit domain protein			glutamate synthase small subunit family protein, proteobacterial		CDS	Glutamate synthase [NADPH] small chain	1.4.1.13		base_tigr	0	0	
HAMP domain protein			Signal transduction histidine kinase, nitrate/nitrite-specific	2.7.13.3	CDS	Nitrate/nitrite sensor protein	2.7.3.-		gs-sh	map	orth	
RND transporter, hydrophobe/amphiphile efflux-1 family protein			The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family		CDS	"RND efflux system, inner membrane transporter CmeB"			base_tigr	0	0	
protein YffB		yffB	transcriptional regulator, Spx/MgsR family		CDS	FIG138056: a glutathione-dependent thiol reductase			gs-sh	0	0	
succinyl-diaminopimelate desuccinylase	3.5.1.18	dapE	succinyldiaminopimelate desuccinylase (EC 3.5.1.18)	3.5.1.18	CDS	"N-succinyl-L,L-diaminopimelate desuccinylase"	3.5.1.18		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Uncharacterised protein family (UPF0370).		CDS	Putative inner membrane protein			base_one HP	base_one HP	0	
dienelactone hydrolase family protein			Predicted esterase		CDS	Phospholipase/carboxylesterase family protein	3.1.-.-		0	0	orth	
tRNA(Met) cytidine acetyltransferase TmcA	2.3.1.193	tmcA	tRNA(Met)-cytidine N(4)-acetyltransferase	2.3.1.193	CDS	Predicted P-loop ATPase fused to an acetyltransferase COG1444			base_ec	0	0	
neutral zinc metallopeptidase family protein			Predicted metalloprotease		CDS	"YpfJ protein, zinc metalloprotease superfamily"			0	0	0	
phosphoribosylaminoimidazolesuccinocarboxamide synthase	6.3.2.6	purC	phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	6.3.2.6	CDS	Phosphoribosylaminoimidazole-succinocarboxamide synthase	6.3.2.6		base_tigr	base_ec	base_ec	
lipoprotein 34		nlpB	Beta-barrel assembly machine subunit BamC		CDS	"Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor"			gs-sh	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
dihydrodipicolinate synthase	4.2.1.52	dapA	dihydrodipicolinate synthase (EC 4.2.1.52)	4.2.1.52	CDS	Dihydrodipicolinate synthase	4.2.1.52		base_tigr	base_ec	base_ec	
glycine cleavage system transcriptional repressor		gcvR	Glycine cleavage system regulatory protein		CDS	Glycine cleavage system transcriptional antiactivator GcvR			gs-sh	0	0	
putative peroxiredoxin bcp			Peroxiredoxin	1.11.1.15	CDS	"Thiol peroxidase, Bcp-type"	1.11.1.15		orth	map	base_ec	
hydrogenase-4 component A	1.-.-.-	hyfA	Fe-S-cluster-containing hydrogenase components 2	1.-	CDS	Hydrogenase-4 component A	1.-.-.-		gs-sh	lit-s	map	
hydrogenase-4 component B	1.-.-.-	hyfB	Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit	1.-	CDS	Hydrogenase-4 component B / Formate hydrogenlyase subunit 3	1.-.-.-		gs-sh	0	0	
hydrogenase-4 component C	1.-.-.-	hyfC	Formate hydrogenlyase subunit 4	1.-	CDS	Hydrogenase-4 component C	1.-.-.-		gs-sh	lit-s	orth	
NADH-Ubiquinone/plastoquinone (complex I), various chains family protein			NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit	1.-	CDS	Hydrogenase-4 component D	1.-.-.-		0	0	orth	
hydrogenase-4 component E	1.-.-.-	hyfE	Hydrogenase 4 membrane component (E)	1.-	CDS	Hydrogenase-4 component E	1.-.-.-		gs-sh	lit-s	map	
NADH-Ubiquinone/plastoquinone (complex I), various chains family protein			Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit	1.-	CDS	Hydrogenase-4 component F	1.-.-.-		0	0	orth	
hydrogenase-4 component G	1.-.-.-	hyfG	Ni,Fe-hydrogenase III large subunit	1.-	CDS	Hydrogenase-4 component G	1.-.-.-		gs-sh	lit-s	map	
4Fe-4S binding domain protein			Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)		CDS	Hydrogenase-4 component H	1.-.-.-		0	0	0	
formate hydrogenlyase subunit 7		hycG	Ni,Fe-hydrogenase III small subunit	1.-	CDS	Hydrogenase-4 component I	1.-.-.-		gs-sh	map	orth	
formate hydrogenlyase maturation HycH family protein			Formate hydrogenlyase maturation protein HycH.	1.-	CDS	Hydrogenase-4 component J	1.-.-.-		lit-s	0	0	
AAA domain family protein			Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains		CDS	Formate hydrogenlyase transcriptional activator			0	0	0	
putative formate transporter 1			formate/nitrite transporter		CDS	Formate efflux transporter (TC 2.A.44 family)			tf_idf	tf_idf	tf_idf	
conserved hypothetical protein			Predicted permease		CDS	Putative permease PerM (= YfgO)			base_one HP	base_one HP	gs-sh	
peptidase M48 family protein			Putative Zn-dependent protease, contains TPR repeats		CDS	Exported zinc metalloprotease YfgC precursor			0	0	0	
arsenate reductase	1.20.4.1	arsC	arsenate reductase (glutaredoxin)	1.20.4.1	CDS	Arsenate reductase	1.20.4.1		base_tigr	base_ec	base_ec	
dnaA regulatory inactivator Hda		hda	regulatory inactivation of DnaA Hda protein		CDS	DnaA regulatory inactivator Hda (Homologous to DnaA)			base_tigr	gs-sh	pfam-sh	
uracil permease		uraA	uracil-xanthine permease		CDS	Uracil permease			gs-sh	lit-s	map	
uracil phosphoribosyltransferase	2.4.2.9	upp	uracil phosphoribosyltransferase (EC 2.4.2.9)	2.4.2.9	CDS	Uracil phosphoribosyltransferase	2.4.2.9		base_tigr	base_ec	base_ec	
phosphoribosylformylglycinamidine cyclo-ligase	6.3.3.1	purM	phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	6.3.3.1	CDS	Phosphoribosylformylglycinamidine cyclo-ligase	6.3.3.1		base_ec	base_ec	base_ec	
phosphoribosylglycinamide formyltransferase	2.1.2.2	purN	formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	2.1.2.2	CDS	Phosphoribosylglycinamide formyltransferase	2.1.2.2		base_tigr	base_ec	base_ec	
polyphosphate kinase 1	2.7.4.1	ppk1	polyphosphate kinase 1	2.7.4.1	CDS	Polyphosphate kinase	2.7.4.1		base_lit-s	base_ec	base_ec	
exopolyphosphatase	3.6.1.11	ppx	exopolyphosphatase	3.6.1.11, 3.6.1.40	CDS	Exopolyphosphatase	3.6.1.11		base_lit-s	base_ec	base_ec-d	
cyclic di-GMP phosphodiesterase YfgF	3.1.4.52	yfgF	diguanylate cyclase/phosphodiesterase		CDS	Putative cytochrome C-type biogenesis protein			gs-sh	map	orth	
conserved hypothetical protein			hypothetical protein		CDS	FIG00639493: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF2633).		CDS	Putative inner membrane protein			base_one HP	base_one HP	0	
glycine zipper family protein			Outer membrane lipoprotein		CDS	Putative outer membrane lipoprotein			0	0	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	Putative membrane protein			lit-s	base_one HP	base_one HP	
GMP synthase [glutamine-hydrolyzing]	6.3.5.2	guaA	GMP synthase (glutamine-hydrolyzing) (EC 6.3.5.2)	6.3.5.2	CDS	"GMP synthase [glutamine-hydrolyzing], amidotransferase subunit / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit"	6.3.5.2, 6.3.5.2		base_ec	base_ec-d	base_ec-d	
inosine-5'-monophosphate dehydrogenase	1.1.1.205	guaB	inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	1.1.1.205	CDS	Inosine-5'-monophosphate dehydrogenase	1.1.1.205		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF1407).		CDS	Hypothetical protein yfgJ			base_one HP	base_one HP	gs-sh	
exodeoxyribonuclease VII, large subunit	3.1.11.6	xseA	Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)	3.1.11.6	CDS	Exodeoxyribonuclease VII large subunit	3.1.11.6		base_tigr	base_ec	base_ec	
ribosome-associated GTPase EngA		engA	ribosome-associated GTPase EngA		CDS	GTP-binding protein EngA			base_lit-s	0	0	
outer membrane assembly lipoprotein YfgL		yfgL	Beta-barrel assembly machine subunit BamB		CDS	"Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB)"			base_tigr	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Mlr7403 protein			base_one HP	base_one HP	0	
histidine--tRNA ligase	6.1.1.21	hisS	histidyl-tRNA synthetase (EC 6.1.1.21)	6.1.1.21	CDS	Histidyl-tRNA synthetase	6.1.1.21		base_tigr	base_ec	base_ec	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	1.17.7.1	ispG	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	1.17.7.1,1.17.4.3	CDS	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	1.17.7.1		base_lit-s	base_ec	base_ec-d	
cytoskeleton protein rodZ		rodZ	Uncharacterized protein conserved in bacteria		CDS	FIG021952: putative membrane protein			gs-sh	0	0	
23S rRNA m2A2503 methyltransferase	2.1.1.-	rlmN	23S rRNA m(2)A-2503 methyltransferase (EC 2.1.1.192)	2.1.1.192	CDS	Ribosomal RNA large subunit methyltransferase N	2.1.1.-		base_tigr	gs-sh	map	
nucleoside diphosphate kinase	2.7.4.6	ndk	nucleoside diphosphate kinase (EC 2.7.4.6)	2.7.4.6	CDS	Nucleoside diphosphate kinase	2.7.4.6		base_ec	base_ec	base_ec	
penicillin-binding protein 1C		pbpC	penicillin-binding protein 1C	2.4.1.-	CDS	Penicillin-insensitive transglycosylase & transpeptidase PBP-1C	2.4.2.-		base_lit-s	0	0	
alpha-2-macroglobulin MG1 domain protein			Large extracellular alpha-helical protein		CDS	Alpha-2-macroglobulin			0	0	0	
3-mercaptopyruvate sulfurtransferase	2.8.1.2	sseA	Rhodanese-related sulfurtransferase	2.8.1.1, 2.8.1.2	CDS	"Thiosulfate sulfurtransferase, rhodanese"	2.8.1.1		base_ec-d	base_ec-d	base_ec-d	
									base_both miss	base_both miss	base_both miss	
sseB family protein			SseB protein.		CDS	Protein SseB			lit-s	lit-s	lit-s	
									base_both miss	base_both miss	base_both miss	
peptidase B	3.4.11.23	pepB	aminopeptidase B. Metallo peptidase. MEROPS family M17	3.4.11.23	CDS	Peptidase B	3.4.11.23		base_ec	base_ec	base_ec	
feS assembly protein IscX		iscX	FeS assembly protein IscX		CDS	Believed to be involved in assembly of Fe-S clusters			base_tigr	0	0	
ferredoxin, 2Fe-2S type, ISC system		fdx	ferredoxin, 2Fe-2S type, ISC system		CDS	"Ferredoxin, 2Fe-2S"			base_lit-s	gs-sh	tf_idf	
fe-S protein assembly chaperone HscA		hscA	Chaperone protein HscA		CDS	Chaperone protein HscA			base_tigr	map	base_lit-s	
fe-S protein assembly co-chaperone HscB		hscB	Co-chaperone protein HscB		CDS	Chaperone protein HscB			base_tigr	0	0	
iron-sulfur cluster assembly protein IscA		iscA	Iron-binding apoprotein IscA		CDS	Iron binding protein IscA for iron-sulfur cluster assembly			gs-sh	0	0	
nifU-like protein		nifU	FeS assembly scaffold apoprotein IscU		CDS	Iron-sulfur cluster assembly scaffold protein IscU			gs-sh	gs-sh	gs-sh	
cysteine desulfurase IscS	2.8.1.7	iscS	cysteine desulfurase IscS	2.8.1.7	CDS	"Cysteine desulfurase, IscS subfamily"	2.8.1.7		base_lit-s	base_ec	base_ec	
iron-sulfur cluster assembly transcription factor IscR		iscR	transcriptional regulator, BadM/Rrf2 family		CDS	Iron-sulfur cluster regulator IscR			gs-sh	0	0	
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ	2.1.1.200	trmJ	RNA methyltransferase, TrmH family, group 1	2.1.1.200	CDS	tRNA:Cm32/Um32 methyltransferase			base_ec	gs-sh	map	
inositol-1-monophosphatase	3.1.3.25	suhB	Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family	3.1.3.25	CDS	Inositol-1-monophosphatase	3.1.3.25		base_ec	base_ec	base_ec	
prolyl oligopeptidase family protein			Hydrolases of the alpha/beta superfamily		CDS	Uncharacterized protein yfhR			0	0	gs-sh	
MFS transporter, phenyl propionate permease family protein			phenyl proprionate permease family protein		CDS	Probable 3-phenylpropionic acid transporter			base_tigr	0	0	
PRD domain protein			transcriptional antiterminator, BglG family		CDS	Stationary phase inducible protein CsiE			0	0	0	
hca operon transcriptional activator		hcaR	Transcriptional regulator		CDS	Hca operon (3-phenylpropionic acid catabolism) transcriptional activator HcaR			gs-sh	0	0	
biphenyl 2,3-dioxygenase alpha subunit	1.14.12.18	bphA1	phenylpropionate dioxygenase alpha subunit (EC 1.14.12.19)	1.14.12.19	CDS	"3-phenylpropionate dioxygenase, alpha subunit"	1.14.12.19		base_ec-d	base_ec-d	base_ec	
ring hydroxylating beta subunit			phenylpropionate dioxygenase beta subunit (EC 1.14.12.19)	1.14.12.19	CDS	"3-phenylpropionate dioxygenase, beta subunit"	1.14.12.19		0	0	base_ec	
biphenyl dioxygenase ferredoxin subunit		bphA3	phenylpropionate dioxygenase ferredoxin subunit	1.14.12.19	CDS	3-phenylpropionate dioxygenase ferredoxin subunit			gs-sh	0	0	
3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase	1.3.1.n1	hcaB	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase	1.3.1.87,1.3.1.-	CDS	"2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase"	1.3.1.-		gs-sh	map	orth	
pyridine nucleotide-disulfide oxidoreductase family protein			phenylpropionate dioxygenase ferredoxin reductase subunit (EC 1.18.1.3)	1.18.1.3	CDS	3-phenylpropionate dioxygenase ferredoxin--NAD(+) reductase component	1.18.1.3		0	0	base_ec	
inner membrane protein yphA		yphA	Predicted membrane protein		CDS	Inner membrane protein YphA			gs-sh	lit-s	map	
aldose 1-epimerase		yphB	Galactose mutarotase and related enzymes		CDS	Aldose 1-epimerase family protein YphB			gs-sh	tf_idf	map	
zinc-binding dehydrogenase family protein			Threonine dehydrogenase and related Zn-dependent dehydrogenases		CDS	Hypothetical zinc-type alcohol dehydrogenase-like protein YphC			0	0	0	
branched-chain amino acid transport system / permease component family protein			monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)		CDS	"Predicted sugar ABC transport system, permease protein YphD"			0	0	0	
heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-)	3.6.3.17	CDS	"Predicted sugar ABC transport system, ATP-binding protein YphE"			base_ec-d	0	0	
ABC transporter periplasmic-binding protein yphF		yphF	monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)		CDS	"Predicted sugar ABC transport system, periplasmic binding protein YphF precursor"			gs-sh	0	0	
tetratricopeptide repeat family protein			TPR repeat./Tetratricopeptide repeat.		CDS	"Uncharacterized protein YphG, TPR-domain containing"			0	0	0	
ROK family protein			Transcriptional regulator/sugar kinase		CDS	Putative NAGC-like transcriptional regulator			0	orth	0	
serine hydroxymethyltransferase	2.1.2.1	glyA	serine hydroxymethyltransferase (EC 2.1.2.1)	2.1.2.1	CDS	Serine hydroxymethyltransferase	2.1.2.1		base_ec	base_ec	base_ec	
oxidoreductase NAD-binding domain protein			Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	1.14.12.17	CDS	Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase)	1.14.12.17		0	0	base_ec	
nitrogen regulatory protein P-II 1		glnB	nitrogen regulatory protein P-II family		CDS	Nitrogen regulatory protein P-II			gs-sh	orth	lit-s	
AAA domain family protein			Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains		CDS	Putative sensory histidine kinase YfhA			pfam-sh	0	0	
yfhG lipofamily protein			YfhG lipoprotein.		CDS	putative alpha helix protein			gs-sh	0	0	
putative sensor-like histidine kinase yfhK			Signal transduction histidine kinase	2.7.13.3	CDS	Putative sensor-like histidine kinase YfhK			gs-sh	lit-s	map	
									base_both miss	base_both miss	base_both miss	
phosphoribosylformylglycinamidine synthase	6.3.5.3	purL	phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)	6.3.5.3	CDS	"Phosphoribosylformylglycinamidine synthase, synthetase subunit / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit"	6.3.5.3, 6.3.5.3		base_tigr	base_ec-d	base_ec-d	
tRNA-specific adenosine deaminase	3.5.4.-	tadA	tRNA-adenosine deaminase (EC 3.5.4.-)	3.5.4.-	CDS	tRNA-specific adenosine-34 deaminase	3.5.4.-		gs-sh	gs-sh	gs-sh	
lysozyme-like family protein			Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein		CDS	"Transglycosylase, Slt family"			0	0	0	
haloacid dehalogenase-like hydrolase family protein			haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB		CDS	"Hypothetical protein, similar to phosphoserine phosphatase"			0	0	0	
helix-turn-helix domain, rpiR family protein			transcriptional regulator, RpiR family		CDS	"Sialic acid utilization regulator, RpiR family"			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)		CDS	"4Fe-4S ferredoxin, iron-sulfur binding"			base_one HP	base_one HP	0	
holo-[acyl-carrier-protein] synthase	2.7.8.7	acpS	holo-[acyl-carrier-protein] synthase	2.7.8.7	CDS	Holo-[acyl-carrier protein] synthase	2.7.8.7		base_lit-s	base_ec	base_ec	
pyridoxine 5'-phosphate synthase	2.6.99.2	pdxJ	pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	2.6.99.2	CDS	Pyridoxine 5'-phosphate synthase	2.6.99.2		base_tigr	base_ec	base_ec	
DNA repair protein RecO		recO	DNA replication and repair protein RecO		CDS	DNA recombination and repair protein RecO			base_tigr	pfam-sh	pfam-sh	
GTP-binding protein Era		era	GTP-binding protein Era		CDS	GTP-binding protein Era			base_lit-s	base_lit-s	base_lit-s	
ribonuclease III	3.1.26.3	rnc	RNAse III (EC 3.1.26.3)	3.1.26.3	CDS	Ribonuclease III	3.1.26.3		base_tigr	base_ec	base_ec	
									base_both miss	base_both miss	base_both miss	
signal peptidase I	3.4.21.89	lepB	signal peptidase I (EC:3.4.21.89). Serine peptidase. MEROPS family S26A	3.4.21.89	CDS	Signal peptidase I	3.4.21.89		base_tigr	base_ec	base_ec	
GTP-binding protein LepA	3.6.5.-	lepA	GTP-binding protein LepA		CDS	Translation elongation factor LepA			base_lit-s	pfam-sh	pfam-sh	
sigma-E factor regulatory protein rseC		rseC	positive regulator of sigma(E), RseC/MucC		CDS	Sigma factor RpoE regulatory protein RseC			gs-sh	gs-sh	gs-sh	
sigma-E factor regulatory protein rseB		rseB	sigma E regulatory protein, MucB/RseB		CDS	Sigma factor RpoE negative regulatory protein RseB precursor			gs-sh	gs-sh	gs-sh	
sigma-E factor negative regulatory protein		rseA	anti sigma-E protein, RseA		CDS	Sigma factor RpoE negative regulatory protein RseA			gs-sh	gs-sh	pfam-sh	
RNA polymerase sigma factor RpoE		rpoE	RNA polymerase, sigma-24 subunit, RpoE		CDS	RNA polymerase sigma factor RpoE			gs-sh	base_lit-s	gs-sh	
ribosomal L11 methyltransferase family protein			Predicted O-methyltransferase		CDS	tRNA (adenine37-N(6))-methyltransferase TrmN6	2.1.1.223		0	0	gs-sh	
L-aspartate oxidase	1.4.3.16	nadB	L-aspartate oxidase (EC 1.4.3.16)	1.4.3.16	CDS	L-aspartate oxidase	1.4.3.16		base_tigr	base_lit-s	base_ec	
ATP-dependent RNA helicase SrmB	3.6.4.13	srmB	Superfamily II DNA and RNA helicases	2.7.7.-	CDS	ATP-dependent RNA helicase SrmB			gs-sh	base_lit-s	gs-sh	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	LysR family transcriptional regulator YfiE			gs-sh	gs-sh	gs-sh	
cysteine/O-acetylserine efflux protein		eamB	Putative threonine efflux protein		CDS	"Transporter, LysE family"			gs-sh	orth	orth	
autonomous glycyl radical cofactor		grcA	Acid-induced glycyl radical enzyme		CDS	Pyruvate formate-lyase	2.3.1.54		gs-sh	0	0	
uracil-DNA glycosylase	3.2.2.27	ung	Uracil-DNA glycosylase	3.2.2.27,3.2.2.-	CDS	"Uracil-DNA glycosylase, family 1"			base_tigr	gs-sh	tf_idf	
RNA 2'-O ribose methyltransferase substrate binding family protein			rRNA methylases	2.1.1.-	CDS	hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-]			0	0	gs-sh	
thioredoxin		trxA	thioredoxin	1.8.1.8	CDS	Thioredoxin 2	1.8.1.8		base_lit-s	orth	base_ec	
DTW domain protein			Uncharacterized conserved protein		CDS	FIG00637884: hypothetical protein			0	0	lit-s	
acetyltransferase family protein			Acyl-CoA synthetase (NDP forming)		CDS	Protein acetyltransferase			0	lit-s	0	
CDP-diacylglycerol--serine O-phosphatidyltransferase	2.7.8.8	pssA	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes	2.7.8.8	CDS	CDP-diacylglycerol--serine O-phosphatidyltransferase	2.7.8.8		base_ec	base_lit-s	base_ec	
alpha-ketoglutarate permease		kgtP	metabolite-proton symporter		CDS	Alpha-ketoglutarate permease			gs-sh	lit-s	map	
conserved hypothetical protein			Predicted periplasmic lipoprotein		CDS	Putative outer membrane lipoprotein			base_one HP	base_one HP	0	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
ATP-dependent chaperone protein ClpB		clpB	ATP-dependent chaperone ClpB		CDS	ClpB protein			base_tigr	gs-sh	map	
conserved hypothetical protein			uncharacterized protein, YfiH family		CDS	COG1496: Uncharacterized conserved protein			base_one HP	base_one HP	0	
ribosomal large subunit pseudouridine synthase D	5.4.99.23	rluD	ribosomal large subunit pseudouridine synthase D	5.4.99.23,5.4.99.-	CDS	Ribosomal large subunit pseudouridine synthase D	4.2.1.70		base_lit-s	base_ec-d	lit-s	
conserved hypothetical protein			Beta-barrel assembly machine subunit BamD		CDS	"Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB)"			base_one HP	base_one HP	0	
ribosome-associated inhibitor A		raiA	SSU ribosomal protein S30P/sigma 54 modulation protein		CDS	Ribosome hibernation protein YfiA			gs-sh	0	0	
P-protein	4.2.1.51	pheA	chorismate mutase domain of proteobacterial P-protein, clade 1	4.2.1.51, 5.4.99.5	CDS	Chorismate mutase I / Prephenate dehydratase	5.4.99.5, 4.2.1.51		base_ec-d	base_ec-d	base_ec-d	
T-protein	1.3.1.12	tyrA	chorismate mutase domain of T-protein	1.3.1.12, 5.4.99.5	CDS	Chorismate mutase I / Cyclohexadienyl dehydrogenase(EC 1.3.1.43)	5.4.99.5, 1.3.1.12		base_ec-d	base_ec-d	base_ec-d	
3-deoxy-7-phosphoheptulonate synthase	2.5.1.54		3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54)	2.5.1.54	CDS	2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha	2.5.1.54		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF2799).		CDS	FIG00638228: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Domain of unknown function (DUF4154).		CDS	Uncharacterized protein YfiR precursor			base_one HP	base_one HP	0	
putative diguanylate cyclase YfiN			diguanylate cyclase (GGDEF) domain		CDS	Inner membrane protein YfiN			0	0	orth	
ompA family protein			Outer membrane protein and related peptidoglycan-associated (lipo)proteins		CDS	Integral membrane protein YfiB			gs-sh	0	0	
ribosomal protein L19		rplS	LSU ribosomal protein L19P		CDS	LSU ribosomal protein L19p			base_tigr	map	lit-s	
tRNA (guanine(37)-N(1))-methyltransferase		trmD	tRNA (Guanine37-N(1)-) methyltransferase	2.1.1.31	CDS	tRNA (Guanine37-N1) -methyltransferase	2.1.1.31		base_tigr	gs-sh	base_ec	
16S rRNA processing protein RimM		rimM	16S rRNA processing protein RimM		CDS	16S rRNA processing protein RimM			base_lit-s	base_lit-s	base_lit-s	
ribosomal protein S16		rpsP	SSU ribosomal protein S16P		CDS	SSU ribosomal protein S16p			base_tigr	map	lit-s	
signal recognition particle protein		ffh	signal recognition particle subunit FFH/SRP54 (srp54)		CDS	"Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)"			base_tigr	tf_idf	pfam-sh	
inner membrane protein ypjD		ypjD	ABC-type uncharacterized transport system, permease component		CDS	Glutamate synthase [NADPH] small chain	1.4.1.13		gs-sh	0	0	
conserved hypothetical protein			Putative Mg2+ and Co2+ transporter CorB		CDS	Hemolysins and related proteins containing CBS domains			base_one HP	base_one HP	0	
protein grpE		grpE	Molecular chaperone GrpE (heat shock protein)		CDS	Heat shock protein GrpE			gs-sh	gs-sh	pfam-sh	
ATP-NAD kinase family protein			Predicted sugar kinase	2.7.1.23	CDS	NAD kinase	2.7.1.23		0	0	base_ec	
DNA repair protein RecN		recN	DNA replication and repair protein RecN		CDS	DNA repair protein RecN			base_tigr	base_lit-s	gs-sh	
small protein A		smpA	Beta-barrel assembly machine subunit BamE		CDS	"Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex"			gs-sh	0	0	
rnfH Ubiquitin family protein			Uncharacterized protein conserved in bacteria		CDS	UPF0125 protein yfjF			gs-sh	gs-sh	gs-sh	
ribosome association toxin RatA		ratA	Oligoketide cyclase/lipid transport protein		CDS	Putative oligoketide cyclase/dehydratase or lipid transport protein YfjG			gs-sh	0	0	
ssrA-binding protein		smpB	SsrA-binding protein		CDS	tmRNA-binding protein SmpB			base_tigr	gs-sh	gs-sh	
									base_both miss	base_both miss	base_both miss	
prophage CP4-57 integrase		intA	Integrase		CDS	Mobile element protein			gs-sh	0	0	
conserved hypothetical protein			hypothetical protein		CDS	putative histone			lit-s	base_one HP	base_one HP	
			transcriptional regulator, AlpA family		CDS				base_one miss	base_both miss	base_one miss	
conserved hypothetical protein			Protein of unknown function (DUF3987).		CDS	Hyphotheical protein			base_one HP	base_one HP	0	
			Protein of unknown function (DUF3296).		CDS				base_one miss	base_both miss	base_one miss	
DEAD/DEAH box helicase family protein			Superfamily II helicase		CDS	ATP-dependent DNA helicase			0	0	0	
conserved hypothetical protein			Domain of unknown function (DUF4297)./Domain of unknown function (DUF1837).		CDS	FIG00641488: hypothetical protein			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	putative cell division protein			lit-s	base_one HP	base_one HP	
putative cP4-57 prophage; antitoxin of the RnlA-RnlB toxin-antitoxin system			hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
50S ribosome-binding GTPase family protein			Predicted GTPase		CDS	NgrB			0	0	0	
conserved hypothetical protein			Domain of unknown function (DUF932).		CDS	FIG01224161: hypothetical protein			base_one HP	base_one HP	lit-s	
deoR-like helix-turn-helix domain protein			Predicted transcriptional regulator		CDS	FIG00641766: hypothetical protein			gs-sh	0	0	
putative membrane protein			hypothetical protein		CDS	predicted inner membrane protein			base_one HP	0	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00642476: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	Intergenic-region protein			lit-s	base_one HP	base_one HP	
arsC family protein			Arsenate reductase and related proteins, glutaredoxin family	1.20.4.1	CDS	Arsenate reductase	1.20.4.1		gs-sh	gs-sh	base_ec	
arsenical pump membrane family protein			Na+/H+ antiporter NhaD and related arsenite permeases		CDS	Arsenic efflux pump protein			0	0	0	
arsenical pump membrane family protein			Na+/H+ antiporter NhaD and related arsenite permeases		CDS	Arsenic efflux pump protein			0	0	0	
putative membrane protein			hypothetical protein		CDS	FIG00638879: hypothetical protein			base_one HP	0	base_one HP	
intergenic-region protein			Antirestriction protein.		CDS	Antirestriction protein klcA			0	0	gs-sh	
conserved hypothetical protein			DNA repair protein radc		CDS	DNA repair protein RadC			base_one HP	base_one HP	lit-s	
			Protein of unknown function (DUF987).		CDS				base_one miss	base_both miss	base_one miss	
putative antitoxin YfjZ			YagB/YeeU/YfjZ family.		CDS	YfjZ protein (antitoxin to YpjF)			0	0	0	
putative toxin YpjF			Protein of unknown function (DUF1219).		CDS	YpjF toxin protein			0	lit-s	0	
outer membrane autotransporter barrel domain protein			outer membrane autotransporter barrel domain		CDS	Pertactin precursor			base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
alpha amylase, catalytic domain protein			Glycosidases		CDS	"Alpha-amylase (1,4-alpha-D-glucan glucanohydrolase) (GLYCOGENASE)"	3.2.1.1		0	0	0	
putative alpha amylase			Alpha amylase, catalytic domain.		CDS	"Alpha-amylase (1,4-alpha-D-glucan glucanohydrolase) (GLYCOGENASE) # fragment"	3.2.1.1		tf_idf	0	0	
alpha amylase family domain protein						"Alpha-amylase (1,4-alpha-D-glucan glucanohydrolase) (GLYCOGENASE)"	3.2.1.1		base_one miss	0	base_one miss	
protein CsiD		csiD	CsiD.		CDS	Carbon starvation induced protein CsiD			lit-s	pfam-sh	map	
L-2-hydroxyglutarate oxidase LhgO	1.1.3.15	lhgO	Predicted dehydrogenase	1.1.3.-	CDS	L-2-hydroxyglutarate oxidase	1.1.3.15		gs-sh	base_ec	map	
succinate-semialdehyde dehydrogenase [NADP+] GabD	1.2.1.79	gabD	succinate-semialdehyde dehydrogenase	1.2.1.16	CDS	Succinate-semialdehyde dehydrogenase [NADP+]	1.2.1.16		base_ec-d	base_ec-d	base_ec	
4-aminobutyrate transaminase	2.6.1.19	gabT	4-aminobutyrate aminotransferase apoenzyme	2.6.1.19	CDS	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase	2.6.1.19		base_tigr	base_ec	base_ec	
GABA permease		gabP	gamma-aminobutyrate:proton symporter, AAT family (TC 2.A.3.1.4)		CDS	gamma-aminobutyrate (GABA) permease			base_tigr	tf_idf	map	
HTH-type transcriptional repressor CsiR		csiR	transcriptional regulator, GntR family		CDS	"CsiR, transcriptional repressor of CsiD"			gs-sh	0	0	
conserved hypothetical protein			BON domain./LysM domain.		CDS	FIG00638941: hypothetical protein			base_one HP	base_one HP	0	
proteolipid membrane potential modulator family protein			Uncharacterized homolog of Blt101		CDS	FIG00626295: hypothetical protein			0	0	0	
putative HTH-type transcriptional regulator ygaV			transcriptional regulator, ArsR family		CDS	"Transcriptional regulator, ArsR family"			gs-sh	gs-sh	lit-s	
inner membrane protein ygaP		ygaP	Rhodanese-related sulfurtransferase		CDS	Rhodanese-related sulfurtransferases			gs-sh	orth	map	
DNA-binding protein stpA		stpA	nucleoid protein StpA		CDS	DNA-binding protein stpA			gs-sh	base_lit-s	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF1144).		CDS	Putative inner membrane protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Protein of unknown function (DUF2002).		CDS	FIG01219827: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00638140: hypothetical protein			base_one HP	base_one HP	lit-s	
glutaredoxin-like protein nrdH		nrdH	ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit	1.17.4.1	CDS	"Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib"			gs-sh	0	0	
nrdI protein		nrdI	ribonucleoside-diphosphate reductase 2, operon protein nrdI		CDS	Ribonucleotide reduction protein NrdI			base_tigr	0	0	
ribonucleoside-diphosphate reductase, alpha subunit	1.17.4.1		ribonucleoside-diphosphate reductase class Ib alpha subunit (EC 1.17.4.1)	1.17.4.1	CDS	"Ribonucleotide reductase of class Ib (aerobic), alpha subunit"	1.17.4.1		base_ec	base_ec	base_ec	
ribonucleoside-diphosphate reductase 2 subunit beta	1.17.4.1	nrdF	ribonucleoside-diphosphate reductase class Ib beta subunit (EC 1.17.4.1)	1.17.4.1	CDS	"Ribonucleotide reductase of class Ib (aerobic), beta subunit"	1.17.4.1		base_ec	base_ec	base_ec	
glycine betaine/L-proline transport ATP binding subunit		proV	glycine betaine/L-proline transport ATP binding subunit	3.6.3.32	CDS	L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1)			base_lit-s	0	0	
binding--dependent transport system inner membrane component family protein			ABC-type proline/glycine betaine transport system, permease component		CDS	L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1)			0	0	0	
glycine betaine-binding periplasmic protein		proX	ABC-type proline/glycine betaine transport systems, periplasmic components		CDS	L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1)			gs-sh	0	0	
conserved hypothetical protein			hypothetical protein		CDS	MFS permease protein			lit-s	base_one HP	base_one HP	
major Facilitator Superfamily protein			Arabinose efflux permease		CDS	MFS permease protein			0	0	0	
inner membrane protein YgaZ		ygaZ	Predicted branched-chain amino acid permease (azaleucine resistance)		CDS	FIG00638108: hypothetical protein			gs-sh	0	0	
branched-chain amino acid transport family protein			Branched-chain amino acid transport protein (AzlD).		CDS	"Branched-chain amino acid transport, AzlD"			gs-sh	gs-sh	lit-s	
marR family protein			Transcriptional regulators		CDS	Transcription repressor			gs-sh	0	0	
conserved hypothetical protein						FIG00638175: hypothetical protein			base_one HP	base_one HP	base_one miss	
efflux pump membrane family protein			efflux pump membrane protein (multidrug resistance protein A)		CDS	Multidrug resistance protein A			base_tigr	map	tf_idf	
multidrug resistance protein B		emrB	drug resistance transporter, EmrB/QacA subfamily		CDS	Multidrug resistance protein B			gs-sh	lit-s	map	
S-ribosylhomocysteine lyase	4.4.1.21	luxS	S-ribosylhomocysteine lyase (EC 4.4.1.21)/quorum-sensing autoinducer 2 (AI-2) synthesis protein LuxS	4.4.1.21	CDS	S-ribosylhomocysteine lyase / Autoinducer-2 production protein LuxS	4.4.1.21		base_ec	base_ec	base_ec	
glutamate--cysteine ligase	6.3.2.2	gshA	glutamate-cysteine ligase (EC 6.3.2.2)	6.3.2.2	CDS	Glutamate--cysteine ligase	6.3.2.2		base_tigr	base_ec	base_ec	
inner membrane protein yqaA		yqaA	Predicted membrane protein		CDS	Putative membrane protein			gs-sh	orth	lit-s	
phosphatase YqaB	3.1.3.-	yqaB	haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/beta-phosphoglucomutase family hydrolase		CDS	Putative phosphatase YqaB			gs-sh	lit-s	map	
carbon storage regulator		csrA	carbon storage regulator, CsrA		CDS	Carbon storage regulator			base_tigr	lit-s	gs-sh	
alanine--tRNA ligase	6.1.1.7	alaS	alanyl-tRNA synthetase (EC 6.1.1.7)	6.1.1.7	CDS	Alanyl-tRNA synthetase	6.1.1.7		base_tigr	base_ec	base_ec	
regulatory protein recX		recX	Uncharacterized protein conserved in bacteria		CDS	Regulatory protein RecX			gs-sh	lit-s	0	
protein RecA		recA	protein RecA		CDS	RecA protein			base_lit-s	lit-s	lit-s	
protein YgaD		ygaD	competence/damage-inducible protein CinA C-terminal domain		CDS	C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS			gs-sh	gs-sh	gs-sh	
lytic murein transglycosylase B	2.4.-.-	mltB	lytic murein transglycosylase B	3.2.1.-	CDS	Membrane-bound lytic murein transglycosylase B precursor	3.2.1.-		base_lit-s	gs-sh	tf_idf	
glucitol/sorbitol permease IIC component		srlA	PTS system D-sorbitol-specific IIC component, Gut family (TC 4.A.4.1.1)		CDS	"PTS system, glucitol/sorbitol-specific IIC component"	2.7.1.69		gs-sh	0	0	
glucitol/sorbitol-specific phosphotransferase enzyme IIB component	2.7.1.69	srlE	PTS system D-sorbitol-specific IIB component, Gut family (TC 4.A.4.1.1)/PTS system D-sorbitol-specific IIC component, Gut family (TC 4.A.4.1.1)		CDS	"PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components"	2.7.1.69		gs-sh	base_ec	map	
PTS system, glucitol/sorbitol-specific IIA component family protein	2.7.1.69		PTS system D-sorbitol-specific IIA component, Gut family (TC 4.A.4.1.1)	2.7.1.69	CDS	"PTS system, glucitol/sorbitol-specific IIA component"	2.7.1.69		base_tigr	base_ec	base_ec	
sorbitol-6-phosphate 2-dehydrogenase	1.1.1.140	srlD	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.140	CDS	Sorbitol-6-phosphate 2-dehydrogenase	1.1.1.140		base_ec	base_ec	base_ec	
glucitol operon activator family protein			Glucitol operon activator		CDS	Glucitol operon activator protein			lit-s	lit-s	lit-s	
deoR C terminal sensor domain protein			transcriptional regulator, DeoR family		CDS	Glucitol operon repressor			gs-sh	map	orth	
AAA domain family protein			Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains		CDS	Anaerobic nitric oxide reductase transcription regulator NorR			0	0	0	
arabinose 5-phosphate isomerase GutQ	5.3.1.13	gutQ	KpsF/GutQ family protein		CDS	Glucitol operon GutQ protein			gs-sh	gs-sh	gs-sh	
anaerobic nitric oxide reductase flavorubredoxin		norV	Uncharacterized flavoproteins		CDS	Anaerobic nitric oxide reductase flavorubredoxin			gs-sh	lit-s	map	
nitric oxide reductase FlRd-NAD(+) reductase	1.18.1.-	norW	NAD(P)H-nitrite reductase	1.18.1.-	CDS	Nitric oxide reductase FlRd-NAD(+) reductase	1.18.1.-		gs-sh	lit-s	map	
carbamoyltransferase HypF		hypF	Hydrogenase maturation protein, carbamoyltransferase HypF		CDS	[NiFe] hydrogenase metallocenter assembly protein HypF			base_tigr	gs-sh	gs-sh	
electron transport protein hydN		hydN	Fe-S-cluster-containing hydrogenase components 2		CDS	Fe-S-cluster-containing hydrogenase components 2			gs-sh	map	base_lit-s	
putative predicted protein						FIG00638215: hypothetical protein			base_one miss	lit-s	base_one miss	
periplasmic binding s and sugar binding domain of LacI family protein			transcriptional regulator, LacI family		CDS	AscBF operon repressor			pfam-sh	map	orth	
PTS system, maltose and glucose-specific subfamily, IIC component domain protein			PTS system beta-glucoside-specific IIB component, Glc family (TC 4.A.1.2.3)/PTS system beta-glucoside-specific IIC component, Glc family (TC 4.A.1.2.3)		CDS	"PTS system, arbutin-, cellobiose-, and salicin-specific IIBC component"	2.7.1.69		0	0	0	
glycosyl hydrolase 1 family protein			Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	3.2.1.86	CDS	6-phospho-beta-glucosidase ascB	3.2.1.86		0	0	base_ec	
hydrogenase maturation peptidase HycI	3.4.23.-	hycI	Hydrogenase 3 maturation peptidase Hycl. Aspartic peptidase. MEROPS family A31	3.4.23.51	CDS	Coenzyme F420 hydrogenase maturation protease	3.4.24.-		gs-sh	0	0	
formate hydrogenlyase maturation HycH family protein			Formate hydrogenlyase maturation protein HycH.		CDS	Formate hydrogenlyase maturation protein hycH			lit-s	lit-s	lit-s	
formate hydrogenlyase subunit 7		hycG	[NiFe]-hydrogenase III apoprotein, small subunit		CDS	Formate hydrogenlyase subunit 7			gs-sh	lit-s	map	
4Fe-4S binding domain protein			Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)		CDS	"Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit"			0	0	0	
respiratory-chain NADH dehydrogenase, 30 Kd subunit			Ni,Fe-hydrogenase III large subunit		CDS	Formate hydrogenlyase subunit 5			0	0	0	
hydrogenase-4 component C	1.-.-.-	hyfC	Formate hydrogenlyase subunit 4		CDS	Formate hydrogenlyase subunit 4			gs-sh	gs-sh	base_lit-s	
NADH-Ubiquinone/plastoquinone (complex I), various chains family protein			Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit		CDS	Formate hydrogenlyase subunit 3			0	0	0	
hydrogenase-4 component A	1.-.-.-	hyfA	Fe-S-cluster-containing hydrogenase components 2		CDS	Formate hydrogenlyase subunit 2			gs-sh	0	0	
formate hydrogenlyase regulatory protein hycA		hycA	Transcriptional repressor of hyc and hyp operons.		CDS	Formate hydrogenlyase regulatory protein HycA			gs-sh	lit-s	map	
hydrogenase nickel insertion protein HypA		hypA	Hydrogenase-3 nickel incorporation protein HypA		CDS	[NiFe] hydrogenase nickel incorporation protein HypA			base_tigr	pfam-sh	pfam-sh	
hydrogenase accessory protein HypB		hypB	Hydrogenase nickel incorporation protein HypB		CDS	[NiFe] hydrogenase nickel incorporation-associated protein HypB			base_tigr	gs-sh	gs-sh	
hydrogenase assembly chaperone HypC/HupF		hypC	Hydrogenase maturation protein HypC		CDS	[NiFe] hydrogenase metallocenter assembly protein HypC			base_tigr	gs-sh	gs-sh	
hydrogenase expression/formation protein HypD		hypD	Hydrogenase maturation protein HypD		CDS	[NiFe] hydrogenase metallocenter assembly protein HypD			base_tigr	pfam-sh	pfam-sh	
hydrogenase expression/formation protein HypE		hypE	Hydrogenase maturation protein, carbamoyl dehydratase HypE		CDS	[NiFe] hydrogenase metallocenter assembly protein HypE			base_tigr	gs-sh	gs-sh	
formate hydrogenlyase transcriptional activator		fhlA	Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains		CDS	Formate hydrogenlyase transcriptional activator			gs-sh	lit-s	map	
nitrous oxide-stimulated promoter family protein			Nitrous oxide-stimulated promoter.		CDS	FIG00638716: hypothetical protein			lit-s	0	0	
DNA mismatch repair protein MutS		mutS	DNA mismatch repair protein MutS		CDS	DNA mismatch repair protein MutS			base_lit-s	base_lit-s	base_lit-s	
serine/threonine-protein phosphatase 2	3.1.3.16	pphB	Calcineurin-like phosphoesterase.	3.1.3.16	CDS	Serine/threonine protein phosphatase 2	3.1.3.16		base_ec	base_ec	base_ec	
deoR C terminal sensor domain protein			transcriptional regulator, DeoR family		CDS	Hypothetical transcriptional regulator ygbI			gs-sh	gs-sh	gs-sh	
NAD binding domain of 6-phosphogluconate dehydrogenase family protein			3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases	1.1.-	CDS	D-beta-hydroxybutyrate dehydrogenase	1.1.1.30		0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00641944: hypothetical protein			base_one HP	base_one HP	lit-s	
class II Aldolase and Adducin N-terminal domain protein			Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases		CDS	Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases			0	0	base_lit-s	
xylose isomerase-like TIM barrel family protein			Hydroxypyruvate isomerase		CDS	Hydroxypyruvate isomerase	5.3.1.22		0	0	base_lit-s	
inner membrane permease ygbN		ygbN	gluconate transporter		CDS	Gluconate permease			gs-sh	orth	orth	
RNA polymerase sigma factor RpoS		rpoS	RNA polymerase, sigma 38 subunit, RpoS		CDS	RNA polymerase sigma factor RpoS			gs-sh	base_lit-s	map	
murein hydrolase activator NlpD		nlpD	Membrane proteins related to metalloendopeptidases		CDS	Lipoprotein NlpD			gs-sh	gs-sh	gs-sh	
protein-L-isoaspartate O-methyltransferase	2.1.1.77	pcm	protein-L-isoaspartate(D-aspartate) O-methyltransferase	2.1.1.77	CDS	Protein-L-isoaspartate O-methyltransferase	2.1.1.77		base_tigr	base_ec	base_ec	
5'/3'-nucleotidase SurE	3.1.3.5	surE	5'-nucleotidase/3'-nucleotidase/exopolyphosphatase	3.1.3.5,3.1.3.5, 3.1.3.6, 3.6.1.11	CDS	5-nucleotidase SurE @ Exopolyphosphatase	3.1.3.5, 3.6.1.11		base_tigr	base_ec-d	base_ec-d	
tRNA pseudouridine synthase D	5.4.99.27	truD	tRNA pseudouridine synthase, TruD family	5.4.99.27	CDS	tRNA pseudouridine 13 synthase	4.2.1.-		base_ec	gs-sh	gs-sh	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	4.6.1.12	ispF	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	4.6.1.12	CDS	"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase"	4.6.1.12		base_ec	base_ec	base_ec	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2.7.7.60	ispD	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2.7.7.60	CDS	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2.7.7.60		base_lit-s	base_lit-s	base_lit-s	
cell division protein ftsB		ftsB	cell division protein FtsB		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			lit-s	gs-sh	gs-sh	
inner membrane protein ygbE		ygbE	Protein of unknown function (DUF3561).		CDS	Putative cytochrome oxidase subunit			gs-sh	orth	0	
adenylyl-sulfate kinase	2.7.1.25	cysC	adenylylsulfate kinase (EC 2.7.1.25)	2.7.1.25	CDS	Adenylylsulfate kinase	2.7.1.25		base_ec	base_ec	base_ec	
sulfate adenylyltransferase subunit 1	2.7.7.4	cysN	sulfate adenylyltransferase subunit 1	2.7.7.4	CDS	Sulfate adenylyltransferase subunit 1	2.7.7.4		base_lit-s	base_ec	base_ec	
sulfate adenylyltransferase, small subunit	2.7.7.4	cysD	sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)	2.7.7.4	CDS	Sulfate adenylyltransferase subunit 2	2.7.7.4		base_tigr	base_ec	base_ec	
M42 glutamyl aminopeptidase family protein			IAP aminopeptidase. Metallo peptidase. MEROPS family M28C	3.4.11.-	CDS	Alkaline phosphatase isozyme conversion protein precursor	3.4.11.-		0	0	0	
conserved hypothetical protein						FIG00639362: hypothetical protein			base_one HP	base_one HP	base_one miss	
CRISPR-associated endoribonuclease Cas2, subtype I-E/ECOLI		cas2	CRISPR-associated protein, Cas2 family		CDS	"CRISPR-associated protein, Cas2"			base_tigr	gs-sh	lit-s	
CRISPR-associated endonuclease Cas1	3.1.-.-	cas1	CRISPR-associated protein, Cas1 family		CDS	CRISPR-associated protein Cas1			gs-sh	gs-sh	lit-s	
CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI		cas6e	CRISPR-associated protein, Cse3 family		CDS	"CRISPR-associated protein, Cse3 family"			base_tigr	map	lit-s	
			CRISPR-associated protein, Cas5e family		CDS				base_one miss	base_both miss	base_one miss	
CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI		cas7	CRISPR-associated protein, Cse4 family		CDS	"CRISPR-associated protein, Cse4 family"			base_tigr	map	lit-s	
CRISPR type I-E/ECOLI-associated protein CasB/Cse2		casB	CRISPR-associated protein, Cse2 family		CDS	"CRISPR-associated protein, Cse2 family"			base_tigr	map	lit-s	
CRISPR type I-E/ECOLI-associated protein CasA/Cse1		casA	CRISPR-associated protein, Cse1 family		CDS	"CRISPR-associated protein, Cse1 family"			base_tigr	pfam-sh	lit-s	
CRISPR-associated endonuclease Cas3-HD	3.1.-.-		CRISPR-associated helicase, Cas3 family		CDS	"CRISPR-associated helicase Cas3, protein"			0	0	lit-s	
									base_both miss	base_both miss	base_both miss	
phosphoadenosine phosphosulfate reductase	1.8.4.8	cysH	phosphoadenylylsulfate reductase (thioredoxin) (EC 1.8.4.8)	1.8.4.8	CDS	Phosphoadenylyl-sulfate reductase [thioredoxin]	1.8.4.8		base_ec	base_ec	base_ec	
sulfite reductase (NADPH) hemoprotein, beta-component	1.8.1.2	cysI	sulfite reductase (NADPH) beta subunit (EC 1.8.1.2)	1.8.1.2	CDS	Sulfite reductase [NADPH] hemoprotein beta-component	1.8.1.2		base_tigr	base_ec	base_ec	
sulfite reductase [NADPH] flavoprotein, alpha-component	1.8.1.2		sulfite reductase (NADPH) alpha subunit (EC 1.8.1.2)	1.8.1.2	CDS	Sulfite reductase [NADPH] flavoprotein alpha-component	1.8.1.2		base_tigr	base_ec	base_ec	
queuosine biosynthesis protein QueD		queD	preQ(0) biosynthesis protein QueD	4.2.3.12	CDS	"Queuosine biosynthesis QueD, PTPS-I"			gs-sh	gs-sh	gs-sh	
FAD binding domain protein			Dehydrogenases (flavoproteins)	1.5.5.-	CDS	Probable electron transfer flavoprotein-quinone oxidoreductase YgcN	1.5.5.-		0	0	0	
conserved hypothetical protein			Ferredoxin-like protein		CDS	Ferredoxin-like protein YgcO			base_one HP	base_one HP	0	
conserved hypothetical protein			Glycerol-3-phosphate responsive antiterminator (mRNA-binding)		CDS	Glycerol uptake operon antiterminator regulatory protein			base_one HP	base_one HP	0	
electron transfer flavodomain protein			electron transfer flavoprotein alpha subunit apoprotein		CDS	Putative electron transfer flavoprotein subunit YgcQ			0	0	tf_idf	
electron transfer flavodomain protein			electron transfer flavoprotein beta subunit		CDS	Putative electron transfer flavoprotein subunit YgcR			0	0	tf_idf	
inner membrane metabolite transport protein ygcS		ygcS	Arabinose efflux permease		CDS	Inner membrane metabolite transport protein YgcS			gs-sh	lit-s	map	
FAD linked oxidase, C-terminal domain protein			FAD/FMN-containing dehydrogenases		CDS	Predicted FAD containing dehydrogenase			0	0	0	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	2-deoxy-D-gluconate 3-dehydrogenase	1.1.1.125		0	0	0	
inner membrane protein yqcE		yqcE	Nitrate/nitrite transporter		CDS	Inner membrane protein YqcE			gs-sh	lit-s	map	
carbohydrate kinase, FGGY family			Sugar (pentulose and hexulose) kinases		CDS	Uncharacterized sugar kinase YgcE	2.7.1.-		gs-sh	orth	map	
conserved hypothetical protein						FIG00639362: hypothetical protein			base_one HP	base_one HP	base_one miss	
conserved hypothetical protein			Organic radical activating enzymes		CDS	Queuosine Biosynthesis QueE Radical SAM			base_one HP	base_one HP	gs-sh	
repair family protein			Beta-propeller domains of methanol dehydrogenase type		CDS	Uncharacterized protein YgcG			0	0	0	
phosphopyruvate hydratase	4.2.1.11	eno	enolase (EC 4.2.1.11)	4.2.1.11	CDS	Enolase	4.2.1.11		base_tigr	base_ec	base_ec	
CTP synthase	6.3.4.2	pyrG	CTP synthase (EC 6.3.4.2)	6.3.4.2	CDS	CTP synthase	6.3.4.2		base_tigr	base_lit-s	base_ec	
nucleoside triphosphate pyrophosphohydrolase	3.6.1.8	mazG	MazG family protein	3.6.1.8	CDS	Nucleoside triphosphate pyrophosphohydrolase MazG	3.6.1.8		base_ec	base_ec	base_ec	
mRNA interferase MazF	3.1.-.-	mazF	Growth inhibitor	3.1.-	CDS	Programmed cell death toxin MazF			gs-sh	gs-sh	gs-sh	
antitoxin MazE		mazE	Growth regulator		CDS	Programmed cell death antitoxin MazE			gs-sh	0	0	
GTP pyrophosphokinase	2.7.6.5	relA	(p)ppGpp synthetase, RelA/SpoT family	2.7.6.5	CDS	COG0317: Guanosine polyphosphate pyrophosphohydrolases/synthetases( EC:2.7.6.5 )			base_ec	0	0	
23S rRNA (uracil-5-)-methyltransferase RumA	2.1.1.-	rumA	23S rRNA m(5)U-1939 methyltransferase (EC 2.1.1.190)	2.1.1.190	CDS	23S rRNA (Uracil-5-) -methyltransferase RumA	2.1.1.-		base_tigr	lit-s	gs-sh	
signal transduction histidine-protein kinase BarA	2.7.13.3	barA	Hpt sensor hybrid histidine kinase (EC 2.7.13.3)	2.7.13.3	CDS	BarA sensory histidine kinase (= VarS = GacS)			base_ec	0	0	
glucarate dehydratase	4.2.1.40	gudD	D-glucarate dehydratase (EC 4.2.1.40)	4.2.1.40	CDS	Glucarate dehydratase	4.2.1.40		base_tigr	base_ec	base_ec	
mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein			D-glucarate dehydratase	4.2.1.40	CDS	Glucarate dehydratase related protein YgcY			0	0	0	
putative glucarate transporter			D-galactonate transporter		CDS	D-glucarate permease			0	0	orth	
flavodoxin family protein			Flavodoxins		CDS	Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C)			0	0	0	
RNA pseudouridylate synthase family protein			tRNA pseudouridine synthase C	5.4.99.26,5.4.99.-	CDS	tRNA pseudouridine synthase C	4.2.1.70		0	0	base_lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C)			base_one HP	base_one HP	0	
									base_both miss	base_both miss	base_both miss	
protein syd		syd	Syd protein (SUKH-2).		CDS	Syd protein			gs-sh	lit-s	map	
queuine synthase	1.7.1.13	queF	7-cyano-7-deazaguanine reductase	1.7.1.13	CDS	NADPH-dependent 7-cyano-7-deazaguanine reductase	1.7.1.-		base_tigr	gs-sh	tf_idf	
putative lysine decarboxylase family protein			Predicted Rossmann fold nucleotide-binding protein		CDS	Decarboxylase family protein			0	0	orth	
serine transporter		sdaC	serine transporter		CDS	Serine transporter			base_lit-s	lit-s	lit-s	
L-serine ammonia-lyase	4.3.1.17		L-serine dehydratase, iron-sulfur-dependent, single chain form	4.3.1.17	CDS	L-serine dehydratase	4.3.1.17		base_tigr	base_ec	base_ec	
protein Xni		ygdG	5'-3' exonuclease (including N-terminal domain of PolI)		CDS	DNA polymerase I	2.7.7.7		gs-sh	0	0	
lactaldehyde reductase	1.1.1.77	fucO	lactaldehyde reductase	1.1.1.77	CDS	Lactaldehyde reductase	1.1.1.77		base_lit-s	base_ec	base_ec	
L-fuculose phosphate aldolase	4.1.2.17	fucA	L-fuculose 1-phosphate aldolase (EC 4.1.2.17)	4.1.2.17	CDS	L-fuculose phosphate aldolase	4.1.2.17		base_ec	base_lit-s	base_ec	
H+ symporter permease		fucP	L-fucose:H+ symporter permease		CDS	Fucose permease			base_tigr	gs-sh	orth	
L-fucose isomerase	5.3.1.25	fucI	L-fucose isomerase (EC 5.3.1.25)	5.3.1.25	CDS	L-fucose isomerase	5.3.1.25		base_tigr	base_lit-s	base_ec	
L-fuculokinase	2.7.1.51	fucK	L-fuculokinase (EC 2.7.1.51)	2.7.1.51	CDS	L-fuculokinase	2.7.1.51		base_tigr	base_lit-s	base_ec	
L-fucose mutarotase	5.1.3.n2	fucU	Fucose dissimilation pathway protein FucU	5.1.3.-	CDS	L-fucose mutarotase			gs-sh	base_lit-s	orth	
deoR C terminal sensor domain protein			transcriptional regulator, DeoR family		CDS	L-fucose operon activator			gs-sh	map	orth	
ribosomal RNA large subunit methyltransferase M	2.1.1.-	rlmM	Predicted SAM-dependent methyltransferase	2.1.1.186	CDS	LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Uncharacterized small membrane protein		CDS	COG2363			base_one HP	base_one HP	0	
glycine cleavage system transcriptional activator		gcvA	Transcriptional regulator		CDS	Glycine cleavage system transcriptional activator GcvA			gs-sh	gs-sh	map	
									base_both miss	base_both miss	base_both miss	
conserved hypothetical protein			Bacterial protein of unknown function (DUF903).		CDS	probable lipoprotein			base_one HP	base_one HP	0	
cysteine desulfurase, catalytic subunit CsdA	2.8.1.7	csdA	cysteine desulfurase, catalytic subunit CsdA	4.4.1.-	CDS	"Cysteine desulfurase CsdA-CsdE, main protein CsdA"	2.8.1.7		base_lit-s	base_ec	map	
cysteine desulfurase, sulfur acceptor subunit CsdE	2.8.1.7	csdE	cysteine desulfurase, sulfur acceptor subunit CsdE		CDS	"Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE"			base_lit-s	0	0	
thiF family protein			Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1		CDS	HesA/MoeB/ThiF family protein related to EC-YgdL			gs-sh	gs-sh	gs-sh	
membrane-bound lytic murein transglycosylase A	4.2.2.n1	mltA	Membrane-bound lytic murein transglycosylase	3.2.1.-	CDS	Membrane-bound lytic murein transglycosylase A precursor	3.2.1.-		gs-sh	gs-sh	tf_idf	
N-acetylmuramoyl-L-alanine amidase AmiC	3.5.1.28	amiC	N-acetylmuramoyl-L-alanine amidase	3.5.1.28	CDS	N-acetylmuramoyl-L-alanine amidase	3.5.1.28		base_ec	base_ec	base_lit-s	
amino-acid N-acetyltransferase	2.3.1.1	argA	N-acetylglutamate synthase (EC 2.3.1.1)	2.3.1.1	CDS	N-acetylglutamate synthase	2.3.1.1		base_tigr	base_ec	base_ec	
exodeoxyribonuclease V, alpha subunit	3.1.11.5	recD	DNA helicase/exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5)	3.1.11.5	CDS	Exodeoxyribonuclease V alpha chain	3.1.11.5		base_tigr	base_ec	base_ec	
exodeoxyribonuclease V, beta subunit	3.1.11.5	recB	DNA helicase/exodeoxyribonuclease V, beta subunit (EC 3.1.11.5)	3.1.11.5	CDS	Exodeoxyribonuclease V beta chain	3.1.11.5		base_tigr	base_ec	base_ec	
protease 3	3.4.24.55	ptrA	pitrilysin (EC:3.4.24.55). Metallo peptidase. MEROPS family M16A	3.4.24.55	CDS	Protease III precursor	3.4.24.55		base_ec	base_ec	base_ec	
exodeoxyribonuclease V, gamma subunit	3.1.11.5	recC	DNA helicase/exodeoxyribonuclease V, gamma subunit (EC 3.1.11.5)	3.1.11.5	CDS	Exodeoxyribonuclease V gamma chain	3.1.11.5		base_tigr	base_ec	base_ec	
prepilin-type N-terminal cleavage/methylation domain protein			prepilin-type N-terminal cleavage/methylation domain		CDS	FIG004136: Prepilin peptidase dependent protein C precursor			base_tigr	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2509).		CDS	FIG006270: hypothetical protein			base_one HP	base_one HP	lit-s	
prepilin-type N-terminal cleavage/methylation domain protein			prepilin-type N-terminal cleavage/methylation domain		CDS	FIG004819: Prepilin peptidase dependent protein B precursor			base_tigr	0	0	
prepilin-type N-terminal cleavage/methylation domain protein			prepilin-type N-terminal cleavage/methylation domain		CDS	Prepilin peptidase dependent protein A precursor			base_tigr	orth	map	
conserved hypothetical protein						FIG102772: hypothetical protein			base_one HP	base_one HP	base_one miss	
thymidylate synthase	2.1.1.45	thyA	thymidylate synthase (EC 2.1.1.45)	2.1.1.45	CDS	Thymidylate synthase	2.1.1.45		base_tigr	base_ec	base_ec	
prolipoprotein diacylglyceryl transferase	2.4.99.-	lgt	Prolipoprotein diacylglyceryl transferase	2.-	CDS	Prolipoprotein diacylglyceryl transferase	2.4.99.-		base_tigr	lit-s	base_lit-s	
phosphoenolpyruvate-protein phosphotransferase	2.7.3.9	ptsP	phosphoenolpyruvate-protein phosphotransferase	2.7.3.9	CDS	"FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated"			base_lit-s	0	0	
RNA pyrophosphohydrolase	3.6.1.-	rppH	NTP pyrophosphohydrolases including oxidative damage repair enzymes	3.6.1.-	CDS	Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase	3.6.1.-		gs-sh	0	0	
conserved hypothetical protein						FIG00644768: hypothetical protein			base_one HP	base_one HP	base_one miss	
DNA mismatch repair endonuclease MutH		mutH	DNA mismatch repair protein MutH		CDS	DNA mismatch repair endonuclease MutH			base_tigr	base_lit-s	pfam-sh	
conserved hypothetical protein			Membrane protein TerC, possibly involved in tellurium resistance		CDS	FIG003462: membrane protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Bacterial protein of unknown function (DUF903).		CDS	Hypothetical lipoprotein ygdR precursor			base_one HP	base_one HP	gs-sh	
protein tas		tas	Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)		CDS	"Oxidoreductase, aldo/keto reductase family"			gs-sh	0	0	
lysophospholipid transporter lplT		lplT	Major Facilitator Superfamily.		CDS	Lysophospholipid transporter LplT			gs-sh	lit-s	map	
bifunctional protein aas	6.2.1.20	aas	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	2.3.1.40, 6.2.1.20	CDS	2-acylglycerophosphoethanolamine acyltransferase / Acyl-[acyl-carrier-protein] synthetase	2.3.1.40, 6.2.1.20		base_ec-d	base_ec-d	base_ec	
bacterial regulatory s, lacI family protein			transcriptional regulator, LacI family		CDS	"Galactose operon repressor, GalR-LacI family of transcriptional regulators"			gs-sh	gs-sh	pfam-sh	
diaminopimelate decarboxylase	4.1.1.20	lysA	diaminopimelate decarboxylase	4.1.1.20	CDS	Diaminopimelate decarboxylase	4.1.1.20		base_lit-s	base_ec	base_ec	
conserved hypothetical protein			aspartate racemase		CDS	Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family			base_one HP	base_one HP	0	
transcriptional activator protein lysR		lysR	Transcriptional regulator		CDS	Transcriptional activator protein LysR			gs-sh	lit-s	gs-sh	
galactose-proton symporter		galP	MFS transporter, sugar porter (SP) family		CDS	Arabinose-proton symporter			gs-sh	0	0	
2-deoxy-D-gluconate 3-dehydrogenase	1.1.1.125	kduD	2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	1.1.1.125	CDS	2-deoxy-D-gluconate 3-dehydrogenase	1.1.1.125		base_tigr	base_lit-s	base_ec	
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase	5.3.1.17	kduI	4-deoxy-L-threo-5-hexulose uronate isomerase	5.3.1.17	CDS	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase	5.3.1.17		base_ec	base_lit-s	base_ec	
acetyl-CoA C-acetyltransferase family protein			acetyl-CoA acetyltransferase (EC 2.3.1.9)	2.3.1.9	CDS	Acetyl-CoA acetyltransferase	2.3.1.9		base_tigr	map	base_ec	
inner membrane transport protein YqeG		yqeG	Amino acid permeases		CDS	Serine transporter			gs-sh	orth	map	
bacterial regulatory s, luxR family protein			DNA-binding HTH domain-containing proteins		CDS	Uncharacterized protein YqeH			gs-sh	0	0	
transcriptional regulatory , C terminal family protein			DNA-binding winged-HTH domains		CDS	Putative sensory transducer			0	0	0	
putative predicted protein			hypothetical protein		CDS	YqeJ protein			base_one HP	0	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
tetratricopeptide repeat family protein			Tetratricopeptide repeat.		CDS	Type III secretion chaperone protein for YopD (SycD)			lit-s	0	0	
conserved hypothetical protein			DNA-binding winged-HTH domains		CDS	Putative invasion protein			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS				lit-s	base_one HP	base_one HP	
conserved hypothetical protein						FIG00640522: hypothetical protein			base_one HP	base_one HP	base_one miss	
transglycosylase SLT domain protein			Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)		CDS				0	base_one miss	base_one miss	
			two component transcriptional regulator, LuxR family		CDS				base_one miss	base_both miss	base_one miss	
response regulator			hypothetical protein		CDS	Hypothetical response regulatory protein ygeK			base_one HP	0	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	Putative uncharacterized protein ygeN			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638587: hypothetical protein			lit-s	base_one HP	base_one HP	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
putative lipoprotein			hypothetical protein		CDS	Uncharacterized protein YgeP			base_one HP	0	base_one HP	
lysM domain protein			Membrane proteins related to metalloendopeptidases		CDS	Uncharacterized lipoprotein YgeR precursor			gs-sh	0	0	
molybdopterin-binding domain of aldehyde dehydrogenase family protein			Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs	1.17.1.4	CDS	"Xanthine dehydrogenase, molybdenum binding subunit"	1.17.1.4		0	0	base_ec	
FAD binding domain in molybdopterin dehydrogenase family protein			Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs	1.17.1.4	CDS	"Xanthine dehydrogenase, FAD binding subunit"	1.17.1.4		0	0	base_ec	
2Fe-2S iron-sulfur cluster binding domain protein			Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs		CDS	Xanthine dehydrogenase iron-sulfur subunit	1.17.1.4		0	0	0	
bacterial regulatory , Fis family protein			Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains		CDS	Uncharacterized sigma-54-dependent transcriptional regulator YgeV			0	0	0	
conserved hypothetical protein			probable carbamoyltransferase YgeW		CDS	Aspartate/ornithine carbamoyltransferase family protein protein YgeW			base_one HP	base_one HP	0	
diaminopropionate ammonia-lyase	4.3.1.15	dpaL	diaminopropionate ammonia-lyase (EC 4.3.1.15)	4.3.1.15	CDS	Putative diaminopropionate ammonia-lyase	4.3.1.15		base_ec	base_ec	base_ec	
peptidase M20/M25/M40 family protein			putative selenium metabolism hydrolase		CDS	Putative deacetylase YgeY			0	0	0	
dihydropyrimidinase	3.5.2.2	hydA	dihydropyrimidinase (EC 3.5.2.2)	3.5.2.2	CDS	COG0044: Dihydroorotase and related cyclic amidohydrolases			base_tigr	0	0	
carbamate kinase	2.7.2.2	arcC	carbamate kinase	2.7.2.2	CDS	Carbamate kinase-like protein YqeA			base_lit-s	orth	orth	
conserved hypothetical protein			predicted molybdenum cofactor sulfurylase		CDS	"Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family / Selenium-dependent molybdenum hydroxylase system protein YqeB"			base_one HP	base_one HP	gs-sh	
putative selenium-dependent hydroxylase accessory protein YqeC			probable selenium-dependent hydroxylase accessory protein YqeC		CDS	Accessory protein YqeC in selenium-dependent molybdenum hydroxylase maturation			base_tigr	0	0	
molybdenum hydroxylase accessory protein, YgfJ family		ygfJ	molybdenum cofactor cytidylyltransferase	2.7.7.76	CDS	CTP:molybdopterin cytidylyltransferase			base_tigr	0	0	
putative selenate reductase, YgfK subunit			selenate reductase, Fe-S subunit	1.97.1.9	CDS	"Predicted oxidoreductase, Fe-S subunit"			base_tigr	0	0	
protein SsnA		ssnA	putative selenium metabolism protein SsnA		CDS	SsnA protein			gs-sh	lit-s	gs-sh	
FAD binding domain in molybdopterin dehydrogenase family protein			selenate reductase, FAD-binding subunit		CDS	Uncharacterized protein YgfM			0	0	orth	
molybdopterin-binding domain of aldehyde dehydrogenase family protein			selenate reductase, molybdenum-binding subunit apoprotein		CDS	Possible hypoxanthine oxidase XdhD	1.-.-.-		0	0	0	
uracil-xanthine permease family protein			uracil-xanthine permease		CDS	Putative purine permease YgfO			lit-s	map	orth	
guanine deaminase	3.5.4.3	guaD	guanine deaminase (EC 3.5.4.3)	3.5.4.3	CDS	Guanine deaminase	3.5.4.3		base_tigr	base_ec	base_ec	
putative permease yjcD			Permeases		CDS	Xanthine/uracil/thiamine/ascorbate permease family protein			gs-sh	0	0	
4Fe-4S binding domain protein			Fe-S-cluster-containing hydrogenase components 2		CDS	"Predicted oxidoreductase, Fe-S subunit"			0	0	0	
glutamate synthase, small subunit domain protein			glutamate synthase small subunit family protein, proteobacterial		CDS	Glutamate synthase [NADPH] small chain	1.4.1.13		base_tigr	0	0	
putative purine permease ygfU			xanthine permease		CDS	Putative permease			gs-sh	gs-sh	orth	
isopentenyl-diphosphate delta-isomerase	5.3.3.2	idi	isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2)	5.3.3.2	CDS	Isopentenyl-diphosphate delta-isomerase	5.3.3.2		base_tigr	base_ec	base_ec	
lysine--tRNA ligase	6.1.1.6	lysS	lysyl-tRNA synthetase, class II (EC 6.1.1.6)	6.1.1.6	CDS	Lysyl-tRNA synthetase (class II)	6.1.1.6		base_tigr	base_ec	base_ec	
peptide chain release factor 2		prfB	bacterial peptide chain release factor 2 (bRF-2)		CDS	Peptide chain release factor 2; programmed frameshift-containing			base_tigr	0	0	
conserved hypothetical protein						FIG00638342: hypothetical protein			base_one HP	base_one HP	base_one miss	
single-stranded-DNA-specific exonuclease RecJ	3.1.-.-	recJ	single-stranded-DNA-specific exonuclease RecJ	3.1.-	CDS	Single-stranded-DNA-specific exonuclease RecJ	3.1.-.-		base_lit-s	lit-s	lit-s	
DSBA-like thioredoxin domain protein			Thiol:disulfide interchange protein DsbC	5.3.4.1	CDS	Thiol:disulfide interchange protein DsbC			0	0	base_lit-s	
tyrosine recombinase XerD		xerD	tyrosine recombinase XerD		CDS	Tyrosine recombinase XerD			base_lit-s	lit-s	lit-s	
flavodoxin			flavodoxin, long chain		CDS	Flavodoxin 2			base_tigr	orth	map	
conserved hypothetical protein			Protein of unknown function (DUF1434).		CDS	FIG00622612: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	YgfY COG2938			base_one HP	base_one HP	0	
tRNA-modifying protein ygfZ		ygfZ	folate-binding protein YgfZ		CDS	Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress			gs-sh	0	0	
conserved hypothetical protein			channel protein, hemolysin III family		CDS	COG1272: Predicted membrane protein hemolysin III homolog			base_one HP	base_one HP	tf_idf	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Protein HI1394			base_one HP	base_one HP	0	
glycosyl hydrolase 1 family protein			Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	3.2.1.86	CDS	6-phospho-beta-glucosidase	3.2.1.86		0	0	base_ec	
conserved hypothetical protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	Putative oxidoreductase			base_one HP	base_one HP	0	
glycine dehydrogenase	1.4.4.2	gcvP	glycine dehydrogenase (decarboxylating) alpha subunit/glycine dehydrogenase (decarboxylating) beta subunit	1.4.4.2,1.4.4.2, 1.4.4.2	CDS	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein)	1.4.4.2		base_tigr	base_ec	base_ec-d	
glycine cleavage system H protein		gcvH	glycine cleavage system H protein		CDS	Glycine cleavage system H protein			base_lit-s	lit-s	lit-s	
glycine cleavage system T protein	2.1.2.10	gcvT	glycine cleavage system T protein	2.1.2.10	CDS	Aminomethyltransferase (glycine cleavage system T protein)	2.1.2.10		base_lit-s	base_ec	base_ec	
ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein	1.14.13.-		2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	1.14.13.-	CDS	"2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase"	1.14.13.-		base_tigr	map	lit-s	
2-polyprenyl-6-methoxyphenol 4-hydroxylase	1.14.13.-	ubiH	2-octaprenyl-6-methoxyphenol hydroxylase/2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	1.14.13.-,1.14.13.-, 1.14.13.-	CDS	2-octaprenyl-6-methoxyphenol hydroxylase	1.14.13.-		gs-sh	gs-sh	tf_idf	
xaa-Pro aminopeptidase	3.4.11.9	pepP	aminopeptidase P (EC:3.4.11.9). Metallo peptidase. MEROPS family M24B	3.4.11.9	CDS	Xaa-Pro aminopeptidase	3.4.11.9		base_ec	base_ec	base_ec	
conserved hypothetical protein			yecA family protein		CDS	UPF0149 exported protein YgfB			base_one HP	base_one HP	0	
cell division ZapA family protein			cell division protein ZapA		CDS	Z-ring-associated protein ZapA			lit-s	pfam-sh	pfam-sh	
									base_both miss	base_both miss	base_both miss	
5-formyltetrahydrofolate cyclo-ligase	6.3.3.2		5,10-methenyltetrahydrofolate synthetase	6.3.3.2	CDS	5-formyltetrahydrofolate cyclo-ligase	6.3.3.2		base_tigr	base_lit-s	base_ec	
									base_both miss	base_both miss	base_both miss	
D-3-phosphoglycerate dehydrogenase	1.1.1.95	serA	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	1.1.1.95	CDS	D-3-phosphoglycerate dehydrogenase	1.1.1.95		base_ec	base_lit-s	base_ec	
ribose 5-phosphate isomerase A	5.3.1.6	rpiA	ribose-5-phosphate isomerase (EC 5.3.1.6)	5.3.1.6	CDS	Ribose 5-phosphate isomerase A	5.3.1.6		base_tigr	base_ec	base_ec	
lysR substrate binding domain protein			LysR substrate binding domain.		CDS	FIG00639909: hypothetical protein			lit-s	0	0	
chromosome initiation inhibitor		iciA	transcriptional regulator, ArgP family		CDS	Chromosome initiation inhibitor			gs-sh	lit-s	map	
methylmalonyl-CoA mutase N-terminal domain protein	5.4.99.-		methylmalonyl-CoA mutase C-terminal domain/methylmalonyl-CoA mutase N-terminal domain	5.4.99.2	CDS	Methylmalonyl-CoA mutase	5.4.99.2		tf_idf	lit-s	base_ec	
LAO/AO transport system ATPase	2.7.-.-		LAO/AO transport system ATPase	2.7.-	CDS	putative periplasmic protein kinase ArgK and related GTPases of G3E family			base_lit-s	orth	gs-sh	
enoyl-CoA hydratase/isomerase family protein			methylmalonyl-CoA decarboxylase, homohexamer (EC 4.1.1.41)	4.1.1.41	CDS	Methylmalonyl-CoA decarboxylase	4.1.1.41		map	orth	base_ec	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	COG0583: Transcriptional regulator			gs-sh	gs-sh	lit-s	
acetyl-CoA hydrolase/transferase family protein			succinate CoA transferases		CDS	Propionyl-CoA:succinyl-CoA transferase			0	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Protein of unknown function DUF541			base_one HP	base_one HP	lit-s	
arginine exporter protein ArgO		argO	L-lysine exporter		CDS	"Transporter, LysE family"			gs-sh	orth	map	
small-conductance mechanosensitive channel		mscS	Small-conductance mechanosensitive channel		CDS	Protein involved in stability of MscS mechanosensitive channel			lit-s	gs-sh	gs-sh	
fructose-bisphosphate aldolase, class II	4.1.2.13	fbaA	fructose-bisphosphate aldolase (EC 4.1.2.13)	4.1.2.13	CDS	Fructose-bisphosphate aldolase class II	4.1.2.13		base_ec	base_ec	base_ec	
phosphoglycerate kinase	2.7.2.3	pgk	phosphoglycerate kinase (EC 2.7.2.3)	2.7.2.3	CDS	Phosphoglycerate kinase	2.7.2.3		base_ec	base_ec	base_ec	
erythrose-4-phosphate dehydrogenase	1.2.1.72	epd	erythrose 4-phosphate dehydrogenase (EC 1.2.1.72)	1.2.1.72	CDS	D-erythrose-4-phosphate dehydrogenase	1.2.1.72		base_ec	base_ec	base_ec	
conserved hypothetical protein			Panthothenate kinase		CDS	Uridine kinase family protein YggC homolog			base_one HP	base_one HP	0	
putative transcriptional regulator			Transcriptional regulator		CDS	Putative transcriptional regulator			lit-s	lit-s	lit-s	
fructose-1,6-bisphosphatase, class II	3.1.3.11	glpX	fructose-1,6-bisphosphatase, class II		CDS	"Fructose-1,6-bisphosphatase, GlpX type"	3.1.3.11		base_lit-s	base_ec	map	
zinc-binding dehydrogenase family protein			Threonine dehydrogenase and related Zn-dependent dehydrogenases		CDS	Putative oxidoreductase linked to yggC			0	0	gs-sh	
PTS system mannitol-specific cryptic EIICB component	2.7.1.69	cmtA	PTS system D-mannitol-specific IIB component, Fru family (TC 4.A.2.1.5)/PTS system D-mannitol-specific IIC component, Fru family (TC 4.A.2.1.5)		CDS	"COG2213: Phosphotransferase system, mannitol-specific IIBC component"			gs-sh	0	0	
mannitol-specific cryptic phosphotransferase enzyme IIA component	2.7.1.-	cmtB	PTS system IIA component, Fru family (TC 4.A.2)		CDS	"PTS system, mannitol-specific enzyme II component, cryptic"			gs-sh	orth	map	
transketolase	2.2.1.1	tkt	transketolase (EC 2.2.1.1)	2.2.1.1	CDS	Transketolase	2.2.1.1		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Zn-dependent protease with chaperone function	3.4.24.-	CDS	Putative metalloprotease yggG	3.4.24.-		base_one HP	base_one HP	gs-sh	
agmatinase	3.5.3.11	speB	agmatinase (EC 3.5.3.11)	3.5.3.11	CDS	Agmatinase	3.5.3.11		base_tigr	base_ec	base_ec	
arginine decarboxylase	4.1.1.19	speA	arginine decarboxylase (EC 4.1.1.19)	4.1.1.19	CDS	Biosynthetic arginine decarboxylase	4.1.1.19		base_tigr	base_ec	base_ec	
			Protein of unknown function (DUF2684).		CDS				base_one miss	base_both miss	base_one miss	
methionine adenosyltransferase	2.5.1.6	metK	methionine adenosyltransferase (EC 2.5.1.6)	2.5.1.6	CDS	S-adenosylmethionine synthetase	2.5.1.6		base_tigr	base_ec	base_ec	
galactose-proton symporter		galP	MFS transporter, sugar porter (SP) family		CDS	Arabinose-proton symporter			gs-sh	0	0	
sprT-like family protein			Uncharacterized protein conserved in bacteria		CDS	Protein sprT			gs-sh	gs-sh	gs-sh	
endonuclease-1	3.1.21.1	endA	Endonuclease I	3.1.21.1	CDS	endonuclease I precursor( EC:3.1.21.1 )			base_ec	0	0	
ribosomal RNA small subunit methyltransferase E	2.1.1.193	rsmE	16S rRNA m(3)U-1498 methyltransferase (EC 2.1.1.193)	2.1.1.193	CDS	Ribosomal RNA small subunit methyltransferase E	2.1.1.-		base_ec	lit-s	map	
glutathione synthase	6.3.2.3	gshB	glutathione synthase (EC 6.3.2.3)	6.3.2.3	CDS	Glutathione synthetase	6.3.2.3		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Putative transcriptional regulator		CDS	UPF0301 protein YqgE			base_one HP	base_one HP	0	
putative Holliday junction resolvase			RNAse H-fold protein YqgF	3.1.-	CDS	Putative Holliday junction resolvase YggF			0	tf_idf	0	
conserved hypothetical protein			pilus retraction protein PilT		CDS	Twitching motility protein PilT			base_one HP	base_one HP	gs-sh	
conserved hypothetical protein			pyridoxal phosphate enzyme, YggS family		CDS	"Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC"			base_one HP	base_one HP	0	
YGGT family protein			Predicted integral membrane protein		CDS	"Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock)"			orth	0	0	
conserved hypothetical protein			TIGR00251 family protein		CDS	UPF0235 protein VC0458			base_one HP	base_one HP	0	
non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	3.6.1.-	rdgB	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	3.6.1.19	CDS	"Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific)"	3.6.1.15		base_lit-s	0	base_ec-d	
radical SAM superfamily protein			coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22)	1.3.99.22	CDS	"Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB"			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF1202).		CDS	Putative alpha helix chain			base_one HP	base_one HP	0	
L-asparaginase 2	3.5.1.1	ansB	L-asparaginases, type II	3.5.1.1	CDS	L-asparaginase	3.5.1.1		base_ec	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF2884).		CDS	FIG004016: Uncharacterized protein YggN			base_one HP	base_one HP	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG002060: uncharacterized protein YggL			base_one HP	base_one HP	0	
tRNA (guanine-N(7)-)-methyltransferase	2.1.1.33	trmB	tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)	2.1.1.33	CDS	tRNA (guanine46-N7-)-methyltransferase	2.1.1.33		base_tigr	base_ec	base_ec	
A/G-specific adenine glycosylase	3.2.2.-	mutY	A/G-specific DNA-adenine glycosylase (EC 3.2.2.-)	3.2.2.-	CDS	A/G-specific adenine glycosylase	3.2.2.-		base_tigr	base_lit-s	map	
putative Fe(2+)-trafficking protein			Fe-S cluster protector protein		CDS	FIG001341: Probable Fe(2+)-trafficking protein YggX			map	tf_idf	gs-sh	
conserved hypothetical protein			Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	3.2.1.-	CDS	Membrane-bound lytic murein transglycosylase C precursor	3.2.1.-		base_one HP	base_one HP	0	
nucleoside permease nupG		nupG	nucleoside transporter		CDS	Nucleoside permease NupG			gs-sh	lit-s	orth	
ornithine decarboxylase, constitutive	4.1.1.17	speC	Arginine/lysine/ornithine decarboxylases	4.1.1.17	CDS	Ornithine decarboxylase	4.1.1.17		base_ec	base_ec	base_ec	
conserved hypothetical protein			Uncharacterized membrane protein, possible Na+ channel or pump		CDS	Putative inner membrane protein YqgA			base_one HP	base_one HP	0	
type II secretion system (T2SS), M family protein			Type II secretory pathway, component PulM		CDS	General secretion pathway protein M			0	0	orth	
type II secretion system protein L		gspL	type II secretion system protein L (GspL)		CDS	General secretion pathway protein L			base_tigr	tf_idf	map	
type II secretion system protein C		gspC	type II secretion system protein C (GspC)		CDS	General secretion pathway protein C			base_tigr	orth	tf_idf	
putative lipoprotein			hypothetical protein		CDS	Hypothetical lipoprotein yghG precursor			base_one HP	gs-sh	base_one HP	
leader peptidase pppA		pppA	Type II secretory pathway, prepilin signal peptidase PulO and related peptidases	2.1.1.-, 3.4.23.43	CDS	Leader peptidase (Prepilin peptidase) / N-methyltransferase	3.4.23.43, 2.1.1.-		gs-sh	0	0	
conserved hypothetical protein			Peptidase M60-like family./Domain of unknown function (DUF4092).		CDS	Accessory colonization factor AcfD precursor			base_one HP	base_one HP	0	
conserved hypothetical protein						FIG00641808: hypothetical protein			base_one HP	base_one HP	base_one miss	
glycolate permease glcA		glcA	L-lactate transport		CDS	Glycolate permease			gs-sh	gs-sh	orth	
									base_both miss	base_both miss	base_both miss	
malate synthase G	2.3.3.9	glcB	malate synthase (EC 2.3.3.9)	2.3.3.9	CDS	Malate synthase G	2.3.3.9		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Uncharacterized protein, possibly involved in utilization of glycolate and propanediol		CDS	Hypothetical protein GlcG in glycolate utilization operon			base_one HP	base_one HP	0	
4Fe-4S binding domain protein			Fe-S oxidoreductase		CDS	"Glycolate dehydrogenase, iron-sulfur subunit GlcF"	1.1.99.14		0	0	0	
FAD binding domain protein			FAD/FMN-containing dehydrogenases		CDS	"Glycolate dehydrogenase, FAD-binding subunit GlcE"	1.1.99.14		0	0	0	
glycolate oxidase, subunit GlcD		glcD	glycolate oxidase, subunit GlcD	1.1.3.15	CDS	"Glycolate dehydrogenase, subunit GlcD"	1.1.99.14		base_lit-s	gs-sh	base_ec-d	
bacterial regulatory s, gntR family protein			transcriptional regulator, GntR family		CDS	Glycolate utilization operon transcriptional activator GlcC			gs-sh	0	0	
putative dNA-binding transcriptional regulator domain protein			hypothetical protein		CDS	FIG010505: hypothetical protein			base_one HP	0	base_one HP	
transposase DDE domain protein			Transposase and inactivated derivatives, IS5 family		CDS	Mobile element protein			0	0	0	
inner membrane protein yghQ		yghQ	Membrane protein involved in the export of O-antigen and teichoic acid		CDS	"Inner membrane protein YghQ, probably involved in polysaccharide biosynthesis"			gs-sh	0	0	
thymidylate kinase family protein			Thymidylate kinase		CDS	"Conserved protein YghR, with nucleoside triphosphate hydrolase domain"			lit-s	0	0	
molybdopterin guanine dinucleotide synthesis B family protein			hypothetical protein		CDS	Conserved ATP-binding protein YghS			base_one HP	0	base_one HP	
conserved hypothetical protein			Thymidylate kinase		CDS	"Conserved protein YghT, with nucleoside triphosphate hydrolase domain"			base_one HP	base_one HP	0	
low-affinity inorganic phosphate transporter 1		pitA	Phosphate/sulphate permeases		CDS	Low-affinity inorganic phosphate transporter			gs-sh	gs-sh	map	
bifunctional glutathionylspermidine synthetase/amidase	3.5.1.78	gsp	Glutathionylspermidine synthase	3.5.1.78, 6.3.1.8	CDS	Glutathionylspermidine synthase / Glutathionylspermidine amidohydrolase	6.3.1.8, 3.5.1.78		base_ec-d	base_ec-d	base_ec-d	
glutathione S-transferase, C-terminal domain protein			Glutathione S-transferase		CDS	Uncharacterized GST-like protein yghU associated with glutathionylspermidine synthetase/amidase			lit-s	gs-sh	gs-sh	
hydrogenase assembly chaperone HypC/HupF		hypC	Hydrogenase 2 accessory protein HybG		CDS	[NiFe] hydrogenase metallocenter assembly protein HybG			base_tigr	0	0	
hydrogenase nickel insertion protein HypA		hypA	hydrogenase nickel insertion protein HypA		CDS	[NiFe] hydrogenase nickel incorporation protein HybF			base_lit-s	gs-sh	gs-sh	
hydrogenase-2 operon protein hybE		hybE	Tat proofreading chaperone HybE		CDS	Hydrogenase-2 operon protein hybE			gs-sh	lit-s	gs-sh	
hydrogenase expression/formation protein	3.4.23.-	hybD	Hydrogenase 2 maturation peptidase. Aspartic peptidase. MEROPS family A31	3.4.24.-	CDS	Hydrogenase maturation protease	3.4.24.-		gs-sh	gs-sh	map	
hydrogenase-2 large chain	1.12.99.6	hybC	[NiFe]-hydrogenase II apoprotein, large subunit	1.12.99.6	CDS	Uptake hydrogenase large subunit	1.12.99.6		base_ec	base_ec	base_ec	
polysulphide reductase, NrfD family protein			[NiFe]-hydrogenase II apocytochrome b subunit		CDS	Ni/Fe-hydrogenase 2 B-type cytochrome subunit			gs-sh	0	0	
tat (twin-arginine translocation) pathway signal sequence domain protein			[NiFe]-hydrogenase II apoprotein, ferredoxin-type subunit		CDS	Hydrogenase-2 operon protein hybA precursor			base_tigr	map	gs-sh	
hydrogenase-2 small chain	1.12.99.6	hybO	hydrogenase (NiFe) small subunit (hydA)	1.12.99.6	CDS	Uptake hydrogenase small subunit precursor	1.12.99.6		base_ec	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF2623).		CDS	FIG00638753: hypothetical protein			base_one HP	base_one HP	lit-s	
prolyl oligopeptidase family protein			Dienelactone hydrolase and related enzymes	3.1.1.45	CDS	Dienelactone hydrolase family			0	0	lit-s	
dienelactone hydrolase family protein			Dienelactone hydrolase and related enzymes		CDS	COG0412: Dienelactone hydrolase and related enzymes			lit-s	lit-s	lit-s	
aldo/keto reductase family protein			Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)		CDS	Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)			0	0	base_lit-s	
conserved hypothetical protein			TIGR00645 family protein		CDS	Putative membrane protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	Putative oxidoreductase			base_one HP	base_one HP	0	
tonB system transport protein ExbD		exbD	outer membrane transport energization protein ExbD (TC 2.C.1.1.1)		CDS	Biopolymer transport protein ExbD/TolR			pfam-sh	pfam-sh	pfam-sh	
tonB-system energizer ExbB		exbB	outer membrane transport energization protein ExbB (TC 2.C.1.1.1)		CDS	MotA/TolQ/ExbB proton channel family protein			base_tigr	gs-sh	gs-sh	
cystathionine beta-lyase	4.4.1.8	metC	cystathionine beta-lyase, bacterial	4.4.1.8	CDS	Cystathionine beta-lyase	4.4.1.8		base_tigr	base_ec	base_ec	
inner membrane protein YghB		yghB	Uncharacterized membrane-associated protein		CDS	DedA family inner membrane protein YghB			gs-sh	gs-sh	gs-sh	
bacterial regulatory helix-turn-helix s, AraC family protein			transcriptional regulator, AraC family		CDS	"Transcriptional regulator YqhC, positively regulates YqhD and DkgA"			pfam-sh	0	0	
alcohol dehydrogenase YqhD	1.1.1.-	yqhD	Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family	1.1.-	CDS	NADPH-dependent broad range aldehyde dehydrogenase YqhD			gs-sh	0	0	
2,5-diketo-D-gluconic acid reductase A	1.1.1.274	dkgA	Aldo/keto reductases, related to diketogulonate reductase	1.1.1.274	CDS	"Methylglyoxal reductase, acetol producing / 2,5-diketo-D-gluconate reductase A"	1.1.1.-, 1.1.1.274		base_ec	0	0	
conserved hypothetical protein			Protein of unknown function (DUF3828)./Lumazine-binding domain.		CDS	Uncharacterized protein yqhG precursor			base_one HP	base_one HP	gs-sh	
major outer membrane lipoprotein Lpp		lpp	Murein lipoprotein		CDS	FIG00638009: hypothetical protein			gs-sh	0	0	
radical SAM superfamily protein			uncharacterized radical SAM protein YgiQ		CDS	UPF0313 protein ygiQ			0	0	gs-sh	
protein SufI		sufI	cell division protein SufI		CDS	Putative cell division protein precursor			gs-sh	orth	map	
1-acyl-sn-glycerol-3-phosphate acyltransferase		plsC	1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	2.3.1.51	CDS	1-acyl-sn-glycerol-3-phosphate acyltransferase	2.3.1.51		lit-s	base_lit-s	base_ec	
DNA topoisomerase IV, A subunit	5.99.1.-	parC	DNA topoisomerase IV subunit A	5.99.1.-,5.99.1.3	CDS	Topoisomerase IV subunit A	5.99.1.-		base_tigr	gs-sh	orth	
putative binding protein ygiS			ABC-type oligopeptide transport system, periplasmic component		CDS	"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)"			gs-sh	gs-sh	gs-sh	
antitoxin MqsA		mqsA	putative zinc finger/helix-turn-helix protein, YgiT family		CDS	Antitoxin YgiT			gs-sh	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
gyrI-like small molecule binding domain protein			DNA gyrase inhibitor		CDS	Uncharacterized protein ygiV			gs-sh	gs-sh	gs-sh	
protein ygiW		ygiW	TIGR00156 family protein		CDS	Protein ygiW precursor			gs-sh	gs-sh	gs-sh	
response regulator			Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	Two-component system response regulator QseB			0	0	0	
sensor protein qseC	2.7.13.3	qseC	Signal transduction histidine kinase	2.7.13.3	CDS	Sensory histidine kinase QseC			base_ec	0	0	
flavodoxin-like fold family protein			Putative NADPH-quinone reductase (modulator of drug activity B)		CDS	Modulator of drug activity B			0	0	0	
putative quinol monooxygenase ygiN			Uncharacterized conserved protein		CDS	FIG00896075: hypothetical protein			gs-sh	0	lit-s	
DNA topoisomerase IV, B subunit	5.99.1.-	parE	DNA topoisomerase IV subunit B	5.99.1.-,5.99.1.3	CDS	Topoisomerase IV subunit B	5.99.1.-		base_tigr	gs-sh	orth	
conserved hypothetical protein			Predicted esterase		CDS	"Putative esterase, FIGfam005057"			base_one HP	base_one HP	lit-s	
calcineurin-like phosphoesterase family protein			Predicted phosphohydrolases		CDS	"3',5'-cyclic-nucleotide phosphodiesterase"	3.1.4.17		0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Putative cytoplasmic protein			base_one HP	base_one HP	0	
ADP-ribose pyrophosphatase	3.6.1.13	nudF	nudix-type nucleoside diphosphatase, YffH/AdpP family	3.6.1.13	CDS	ADP-ribose pyrophosphatase	3.6.1.13		base_ec	base_lit-s	base_ec	
outer membrane protein tolC		tolC	outer membrane protein tolC (1.B.17.1.1)		CDS	"Type I secretion outer membrane protein, TolC precursor"			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Predicted integral membrane protein		CDS	Possible lipoprotein			base_one HP	base_one HP	0	
glutathionylspermidine synthase preATP-grasp family protein			Glutathionylspermidine synthase		CDS	"Similarity with glutathionylspermidine synthase, group 1"	6.3.1.8		0	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Uncharacterized protein ygiD			base_one HP	base_one HP	gs-sh	
zinc transporter ZupT		zupT	Predicted divalent heavy-metal cations transporter		CDS	Zinc transporter ZupT			gs-sh	lit-s	map	
conserved hypothetical protein			Protein of unknown function (DUF4051).		CDS	FIG00638054: hypothetical protein			base_one HP	base_one HP	lit-s	
3,4-dihydroxy-2-butanone 4-phosphate synthase	4.1.99.12	ribB	3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	4.1.99.12	CDS	"3,4-dihydroxy-2-butanone 4-phosphate synthase"	4.1.99.12		base_ec	base_ec	base_ec	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG01200701: hypothetical protein			base_one HP	base_one HP	lit-s	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	Uncharacterized fimbrial-like protein ygiL precursor			0	0	gs-sh	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
type VII secretion system (T7SS), usher family protein			P pilus assembly protein, porin PapC		CDS	Uncharacterized outer membrane usher protein yqiG precursor			0	0	gs-sh	
gram-negative pili assembly chaperone, C-terminal domain protein			P pilus assembly protein, chaperone PapD		CDS	Hypothetical fimbrial chaperone yqiH			0	0	gs-sh	
fimbrial family protein			Fimbrial protein.		CDS	FIG00639456: hypothetical protein			lit-s	0	0	
glycogen synthesis protein glgS		glgS	Glycogen synthesis protein.		CDS	glycogen synthesis protein GlgS			gs-sh	lit-s	tf_idf	
inner membrane protein yqiJ		yqiJ	Protein of unknown function (DUF1449).		CDS	FIG00637968: hypothetical protein			gs-sh	0	lit-s	
inner membrane protein yqiK		yqiK	Uncharacterized protein conserved in bacteria		CDS	Inner membrane protein YqiK			gs-sh	lit-s	0	
bifunctional protein RfaE, domain I	2.7.1.-	rfaE	D-alpha,beta-D-heptose 7-phosphate 1-kinase/D-beta-D-heptose 1-phosphate adenylyltransferase	2.7.7.70, 2.7.1.167,2.7.1.167, 2.7.7.70	CDS	ADP-heptose synthase / D-glycero-beta-D-manno-heptose 7-phosphate kinase	2.7.-.-		gs-sh	0	0	
glnD PII-uridylyltransferase family protein			Glutamine synthetase adenylyltransferase	2.7.7.42	CDS	Glutamate-ammonia-ligase adenylyltransferase	2.7.7.42		gs-sh	map	base_ec	
CYTH domain protein			Uncharacterized conserved protein		CDS	Adenylate cyclase	4.6.1.1		0	0	0	
						FIG00642543: hypothetical protein			base_both miss	base_one miss	base_one miss	
bacterial SH3 domain protein			SH3 domain protein		CDS	COG3103: SH3 domain protein			lit-s	lit-s	lit-s	
multifunctional CCA protein	3.1.3.-	cca	tRNA nucleotidyltransferase/poly(A) polymerase	2.7.7.72, 3.1.4.-, 3.1.3.-	CDS	tRNA nucleotidyltransferase	2.7.7.21, 2.7.7.25		gs-sh	gs-sh	gs-sh	
undecaprenyl-diphosphatase UppP	3.6.1.27	uppP	undecaprenyl-diphosphatase UppP	3.6.1.27	CDS	Undecaprenyl-diphosphatase	3.6.1.27		base_lit-s	base_ec	base_ec	
dihydroneopterin aldolase	4.1.2.25	folB	dihydroneopterin aldolase	4.1.2.25	CDS	Dihydroneopterin aldolase	4.1.2.25		base_lit-s	base_ec	base_ec	
acyl-phosphate glycerol 3-phosphate acyltransferase	2.3.1.-	plsY	acyl-phosphate glycerol-3-phosphate acyltransferase	2.3.1.15	CDS	Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY			base_tigr	0	0	
HTH-type transcriptional regulator DmlR		dmlR	transcriptional regulator, LysR family		CDS	LysR family transcriptional regulator YgiP			gs-sh	gs-sh	gs-sh	
L(+)-tartrate dehydratase subunit alpha	4.2.1.32	ttdA	hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region	4.2.1.32	CDS	L(+)-tartrate dehydratase alpha subunit	4.2.1.32		base_ec	base_ec	base_ec	
L(+)-tartrate dehydratase subunit beta	4.2.1.32	ttdB	hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region	4.2.1.32	CDS	L(+)-tartrate dehydratase beta subunit	4.2.1.32		base_ec	base_ec	base_ec	
L-tartrate/succinate antiporter		ttdT	anion transporter		CDS	Citrate Succinate antiporter (TC 2.A.47.3.2)			gs-sh	0	0	
putative tRNA threonylcarbamoyladenosine biosynthesis protein Gcp			O-sialoglycoprotein endopeptidase (EC 3.4.24.57)	3.4.24.57	CDS	"TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA"			gs-sh	gs-sh	gs-sh	
ribosomal protein S21		rpsU	SSU ribosomal protein S21P		CDS	SSU ribosomal protein S21p			base_tigr	map	lit-s	
DNA primase	2.7.7.-	dnaG	DNA primase (EC 2.7.7.-)	2.7.7.-	CDS	DNA primase	2.7.7.-		lit-s	base_lit-s	lit-s	
RNA polymerase sigma factor rpoD		rpoD	RNA polymerase, sigma 70 subunit, RpoD		CDS	RNA polymerase sigma factor RpoD			gs-sh	lit-s	gs-sh	
G/U mismatch-specific DNA glycosylase	3.2.2.28	mug	G/U mismatch-specific uracil-DNA glycosylase (EC 3.2.2.-)	3.2.2.-	CDS	G:T/U mismatch-specific uracil/thymine DNA-glycosylase			gs-sh	0	0	
siderophore-interacting FAD-binding domain protein			Siderophore-interacting protein		CDS	iron-chelator utilization protein			0	0	orth	
transcriptional regulator PadR-like family protein			transcriptional regulator, PadR family		CDS	"Transcriptional regulator, PadR family"			pfam-sh	pfam-sh	lit-s	
aerotaxis receptor		aer	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor		CDS	Aerotaxis sensor receptor protein			gs-sh	gs-sh	map	
putrescine aminotransferase	2.6.1.82	ygjG	diamine aminotransferase apoenzyme	2.6.1.82,2.6.1.29	CDS	Putrescine aminotransferase	2.6.1.82		base_tigr	base_ec	base_ec-d	
putative tRNA binding domain protein			EMAP domain		CDS	tRNA-binding protein YgjH			gs-sh	gs-sh	gs-sh	
periplasmic binding s and sugar binding domain of LacI family protein			transcriptional regulator, LacI family		CDS	Evolved beta-D-galactosidase transcriptional repressor			pfam-sh	0	0	
evolved beta-galactosidase subunit alpha	3.2.1.23	ebgA	Beta-galactosidase/beta-glucuronidase	3.2.1.23	CDS	"Evolved beta-D-galactosidase, alpha subunit"			base_ec	0	0	
conserved hypothetical protein			Beta-galactosidase, beta subunit		CDS	"Evolved beta-D-galactosidase, beta subunit"			base_one HP	base_one HP	orth	
inner membrane transporter ygjI		ygjI	amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	Putative oxidoreductase			gs-sh	gs-sh	map	
conserved hypothetical protein			hypothetical protein		CDS	FIG00639150: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Glycogen debranching enzyme		CDS	Putative isomerase			base_one HP	base_one HP	0	
2,4-dienoyl-CoA reductase [NADPH]	1.3.1.34	fadH	2,4-dienoyl-CoA reductase (EC 1.3.1.34)	1.3.1.34	CDS	"2,4-dienoyl-CoA reductase [NADPH]"	1.3.1.34		base_ec	base_ec	base_ec	
antitoxin HigA		higA	Predicted transcription regulator containing HTH domain		CDS	Putative cytoplasmic protein			gs-sh	0	0	
mRNA interferase HigB	3.1.-.-	higB	Uncharacterized protein conserved in bacteria		CDS	FIG00639506: hypothetical protein			gs-sh	0	lit-s	
ribosomal RNA large subunit methyltransferase G	2.1.1.174	rlmG	16S RNA G1207 methylase RsmC	2.1.1.174	CDS	23S rRNA (guanine-N-2-) -methyltransferase rlmG	2.1.1.-		base_ec	gs-sh	gs-sh	
conserved hypothetical protein			Predicted metal-dependent hydrolase		CDS	COG1451: Predicted metal-dependent hydrolase			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Uncharacterized membrane protein		CDS	SanA protein			base_one HP	base_one HP	0	
oxidoreductase , NAD-binding Rossmann fold family protein			Predicted dehydrogenases and related proteins		CDS	Possible oxidoreductase			0	0	0	
integral membrane , TerC family protein			integral membrane protein, TerC family		CDS	Integral membrane protein TerC			base_tigr	lit-s	lit-s	
sodium:dicarboxylate symporter family protein			Na+/serine symporter		CDS	Sodium:dicarboxylate symporter			0	lit-s	0	
inner membrane protein ygjV		ygjV	Bacterial inner membrane protein.		CDS	Inner membrane protein ygjV			gs-sh	lit-s	gs-sh	
altronate hydrolase		uxaA	D-altronate dehydratase (EC 4.2.1.7)	4.2.1.7	CDS	Altronate hydrolase	4.2.1.7		gs-sh	lit-s	base_ec	
glucuronate isomerase family protein			D-glucuronate isomerase (EC 5.3.1.12)	5.3.1.12	CDS	Uronate isomerase	5.3.1.12		0	0	base_ec	
hexuronate transporter		exuT	D-galactonate transporter		CDS	Hexuronate transporter			gs-sh	lit-s	map	
bacterial regulatory s, gntR family protein			transcriptional regulator, GntR family		CDS	Hexuronate utilization operon transcriptional repressor ExuR			gs-sh	0	0	
inner membrane protein YqjA		yqjA	Uncharacterized membrane-associated protein		CDS	DedA family inner membrane protein YqjA			gs-sh	gs-sh	gs-sh	
secD export N-terminal TM region family protein			SecD export protein N-terminal TM region.		CDS	Uncharacterized protein YqjB			lit-s	0	0	
protein yqjC		yqjC	Valyl-tRNA synthetase		CDS	Periplasmic protein YqjC			gs-sh	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Uncharacterized membrane protein YqjD			base_one HP	base_one HP	0	
inner membrane protein yqjE		yqjE	Predicted membrane protein		CDS	Inner membrane protein YqjE			gs-sh	lit-s	map	
yqjK-like family protein			YqjK-like protein.		CDS	Inner membrane protein YqjK			lit-s	map	pfam-sh	
inner membrane protein yqjF		yqjF	Predicted membrane protein		CDS	Inner membrane protein YqjF			gs-sh	lit-s	map	
glutathione S-transferase, C-terminal domain protein			Predicted glutathione S-transferase		CDS	"Glutathione S-transferase, omega"	2.5.1.18		lit-s	0	0	
inner membrane protein yhaH		yhaH	Predicted membrane protein		CDS	hypothetical protein			gs-sh	base_one HP	base_one HP	
inner membrane protein yhaI		yhaI	Predicted membrane protein		CDS	Inner membrane protein YhaI			gs-sh	lit-s	map	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	LysR-family transcriptional regulator YhaJ			gs-sh	gs-sh	gs-sh	
pirin-like protein yhaK		yhaK	Pirin-related protein		CDS	Pirin-like protein YhaK			gs-sh	lit-s	orth	
conserved hypothetical protein			hypothetical protein		CDS	Uncharacterized protein YhaL			lit-s	base_one HP	base_one HP	
serine dehydratase alpha chain family protein			Uncharacterized conserved protein		CDS	Inner membrane protein			0	0	0	
inner membrane transport protein YhaO		yhaO	Amino acid permeases		CDS	Serine transporter			gs-sh	orth	map	
L-serine ammonia-lyase	4.3.1.17		L-serine dehydratase, iron-sulfur-dependent, single chain form	4.3.1.17	CDS	L-serine dehydratase	4.3.1.17		base_tigr	base_ec	base_ec	
protein tdcF		tdcF	endoribonuclease L-PSP, putative		CDS	Hypothetical protein TdcF in cluster with anaerobic degradation of L-threonine to propionate			gs-sh	gs-sh	gs-sh	
formate acetyltransferase	2.3.1.54	pflB	keto acid formate lyase	2.3.1.54,2.3.1.-	CDS	2-ketobutyrate formate-lyase / Pyruvate formate-lyase	2.3.1.-, 2.3.1.54		base_tigr	0	0	
acetate kinase	2.7.2.1	ackA	propanoate kinase/acetate kinase	2.7.2.15,2.7.2.-, 2.7.2.1	CDS	Acetate kinase @ Propionate kinase	2.7.2.1, 2.7.2.15		base_tigr	base_ec-d	0	
serine transporter		sdaC	serine transporter		CDS	"L-threonine transporter, anaerobically inducible"			base_lit-s	0	0	
threonine ammonia-lyase	4.3.1.19	ilvA	L-threonine ammonia-lyase (EC 4.3.1.19)	4.3.1.19	CDS	"Threonine dehydratase, catabolic"	4.3.1.19		base_tigr	base_ec	base_ec	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	Threonine catabolic operon transcriptional activator TdcA			gs-sh	0	0	
conserved hypothetical protein			hypothetical protein		CDS	"orf, hypothetical protein"			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638045: hypothetical protein			lit-s	base_one HP	base_one HP	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
									base_both miss	base_both miss	base_both miss	
glycerate kinase 2	2.7.1.31	garK	glycerate kinase	2.7.1.31	CDS	Glycerate-2-kinase	2.7.1.165		base_ec	base_ec-d	base_ec-d	
2-hydroxy-3-oxopropionate reductase	1.1.1.60		tartronate semialdehyde reductase (EC 1.1.1.60)	1.1.1.60	CDS	2-hydroxy-3-oxopropionate reductase	1.1.1.60		base_tigr	base_lit-s	base_ec	
2-dehydro-3-deoxyglucarate aldolase	4.1.2.20	garL	5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20)	4.1.2.20	CDS	2-dehydro-3-deoxyglucarate aldolase	4.1.2.20		base_tigr	base_lit-s	base_ec	
putative galactarate transporter			D-galactonate transporter		CDS	D-galactarate permease @ D-glucarate permease			0	0	0	
galactarate dehydratase	4.2.1.42	garD	galactarate dehydratase (EC 4.2.1.42)	4.2.1.42	CDS	D-galactarate dehydratase	4.2.1.42		base_tigr	base_ec	base_ec	
antitoxin PrlF		sohA	transcriptional regulator, AbrB family		CDS	HtrA suppressor protein			gs-sh	gs-sh	gs-sh	
toxin YhaV	3.1.-.-	yhaV	Toxin with endonuclease activity YhaV.		CDS	Uncharacterized protein yhaV			gs-sh	gs-sh	gs-sh	
deoR-like helix-turn-helix domain protein			transcriptional regulator, DeoR family		CDS	Transcriptional repressor of aga operon			gs-sh	0	0	
D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	4.1.2.40		tagatose-bisphosphate aldolase noncatalytic subunit	2.7.1.144	CDS	Tagatose-6-phosphate kinase AgaZ	2.7.1.144		base_tigr	base_ec-d	base_ec	
PTS system, mannose/fructose/sorbose , IIB component family protein	2.7.1.69		PTS system N-acetylgalactosamine-specific EIIB component, Man family (TC 4.A.6.1.4)	2.7.1.69	CDS	"PTS system, N-acetylgalactosamine-specific IIB component"	2.7.1.69		base_tigr	base_ec	base_ec	
PTS system sorbose-specific iic component family protein			Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC		CDS	"PTS system, N-acetylgalactosamine-specific IIC component"	2.7.1.69		0	0	0	
amidohydrolase family protein			N-acetylglucosamine-6-phosphate deacetylase	3.5.1.25	CDS	N-acetylgalactosamine-6-phosphate deacetylase	3.5.1.25		0	0	base_ec	
putative tagatose-6-phosphate ketose/aldose isomerase			galactosamine 6-phosphate isomerase AgaS	5.-	CDS	Galactosamine-6-phosphate isomerase	5.3.1.-		0	0	0	
class II aldolase, tagatose bisphosphate family	4.1.2.-		tagatose-bisphosphate aldolase catalytic subunit	4.1.2.40	CDS	"Tagatose 1,6-bisphosphate aldolase"	4.1.2.40		orth	map	base_ec	
galactosamine-specific PTS system enzyme IIB component		agaB	PTS system D-galactosamine-specific EIIB component, Man family (TC 4.A.6.1.5)	2.7.1.69	CDS	"PTS system, galactosamine-specific IIB component"	2.7.1.69		gs-sh	lit-s	base_ec	
PTS system, mannose/fructose/sorbose , IIC component family protein			PTS system D-galactosamine-specific EIIC component, Man family (TC 4.A.6.1.5)		CDS	"PTS system, galactosamine-specific IIC component"	2.7.1.69		base_tigr	0	0	
PTS system, mannose/fructose/sorbose , IID component family protein			PTS system D-galactosamine-specific EIID component, Man family (TC 4.A.6.1.5)		CDS	"PTS system, galactosamine-specific IID component"	2.7.1.69		base_tigr	tf_idf	map	
glucosamine-6-phosphate isomerases/6-phosphogluconolactonase family protein			galactosamine 6-phosphate isomerase AgaI	5.3.1.-	CDS	Galactosamine-6-phosphate isomerase (galactosamine-6-phosphate deaminase)	5.3.1.-		0	0	0	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	Putative fimbrial-like protein			0	0	0	
gram-negative pili assembly chaperone, C-terminal domain protein			P pilus assembly protein, chaperone PapD		CDS	Chaperone protein fimC precursor			0	0	gs-sh	
type VII secretion system (T7SS), usher family protein			P pilus assembly protein, porin PapC		CDS	type 1 fimbriae anchoring protein FimD			0	0	gs-sh	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	FIG085450: fimbrial protein			0	lit-s	0	
ribosomal RNA small subunit methyltransferase I	2.1.1.198	rsmI	probable S-adenosylmethionine-dependent methyltransferase, YraL family	2.1.1.198	CDS	rRNA small subunit methyltransferase I			base_ec	gs-sh	gs-sh	
penicillin-binding protein activator LpoA		lpoA	Putative lipoprotein		CDS	LppC putative lipoprotein			gs-sh	0	0	
conserved hypothetical protein			TIGR00252 family protein		CDS	Predicted endonuclease distantly related to archaeal Holliday junction resolvase			base_one HP	base_one HP	0	
SIS domain protein			DnaA-interacting protein DiaA		CDS	Phosphoheptose isomerase	5.3.1.-		0	0	0	
BON domain protein			Predicted periplasmic or secreted lipoprotein		CDS	21 kDa hemolysin precursor			0	0	0	
putative permease family protein			Predicted permeases		CDS	FIG006303: protein yraQ			map	gs-sh	gs-sh	
NAD dependent epimerase/dehydratase family protein			Predicted nucleoside-diphosphate-sugar epimerases		CDS	Oxidoreductase	1.1.1.-		0	0	orth	
putative uPF0306 protein yhbP			Uncharacterized protein conserved in bacteria		CDS	FIG01219785: hypothetical protein			gs-sh	0	lit-s	
general stress protein 18	3.2.-.-	yfkM	intracellular protease, PfpI family	3.2.-	CDS	General stress protein 18			gs-sh	lit-s	map	
acetyltransferase family protein			Predicted acetyltransferase	2.3.1.-	CDS	FIG002208: Acetyltransferase	2.3.1.-		lit-s	lit-s	lit-s	
GIY-YIG catalytic domain protein			Predicted endonuclease containing a URI domain		CDS	FIG137864: putative endonuclease containing a URI domain			0	0	lit-s	
conserved hypothetical protein			Putative lipid carrier protein		CDS	FIG138517: Putative lipid carrier protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Collagenase and related proteases	3.4.-	CDS	FIG139552: Putative protease			base_one HP	base_one HP	tf_idf	
peptidase U32 family protein			Collagenase and related proteases		CDS	FIG139928: Putative protease			0	0	0	
luciferase oxidoreductase, group 1 family protein	1.-.-.-		luciferase family oxidoreductase, group 1		CDS	Luciferase-like monooxygenase	1.14.-.-		base_tigr	0	0	
tryptophan-specific transport protein		mtr	aromatic amino acid transport protein		CDS	Tryptophan-specific transport protein			gs-sh	lit-s	map	
cold-shock DEAD box protein A	3.6.4.13	deaD	ATP-dependent RNA helicase CsdA	3.6.4.13,5.99.1.-	CDS	Cold-shock DEAD-box protein A			gs-sh	pfam-sh	map	
lipoprotein nlpI		nlpI	Lipoprotein NlpI, contains TPR repeats		CDS	Lipoprotein nlpI precursor			gs-sh	gs-sh	gs-sh	
polyribonucleotide nucleotidyltransferase	2.7.7.8	pnp	polyribonucleotide nucleotidyltransferase	2.7.7.8	CDS	Polyribonucleotide nucleotidyltransferase	2.7.7.8		base_lit-s	base_ec	base_ec	
									base_both miss	base_both miss	base_both miss	
ribosomal protein S15		rpsO	SSU ribosomal protein S15P		CDS	SSU ribosomal protein S15p (S13e)			base_tigr	0	0	
tRNA pseudouridine(55) synthase	5.4.99.25	truB	tRNA pseudouridine synthase B	5.4.99.25,4.2.1.70	CDS	tRNA pseudouridine synthase B	4.2.1.70		base_tigr	base_ec-d	base_lit-s	
ribosome-binding factor A		rbfA	ribosome-binding factor A		CDS	Ribosome-binding factor A			base_lit-s	lit-s	lit-s	
translation initiation factor IF-2		infB	bacterial translation initiation factor 2 (bIF-2)		CDS	Translation initiation factor 2			gs-sh	0	0	
transcription elongation protein nusA		nusA	NusA antitermination factor		CDS	Transcription termination protein NusA			gs-sh	gs-sh	pfam-sh	
ribosome maturation factor rimP		rimP	Uncharacterized protein conserved in bacteria		CDS	FIG000325: clustered with transcription termination protein NusA			gs-sh	0	lit-s	
argininosuccinate synthase	6.3.4.5	argG	argininosuccinate synthase (EC 6.3.4.5)	6.3.4.5	CDS	Argininosuccinate synthase	6.3.4.5		base_tigr	base_ec	base_ec	
putative phosphoethanolamine transferase yhbX			Predicted membrane-associated, metal-dependent hydrolase		CDS	Outer-membrane protein yhbX precursor			gs-sh	gs-sh	gs-sh	
preprotein translocase, SecG subunit		secG	protein translocase subunit secG		CDS	Preprotein translocase subunit SecG (TC 3.A.5.1.1)			base_tigr	lit-s	gs-sh	
phosphoglucosamine mutase	5.4.2.10	glmM	phosphoglucosamine mutase (EC 5.4.2.10)	5.4.2.10	CDS	Phosphoglucosamine mutase	5.4.2.10		base_tigr	base_ec	base_ec	
dihydropteroate synthase	2.5.1.15	folP	Dihydropteroate synthase (EC 2.5.1.15)	2.5.1.15	CDS	Dihydropteroate synthase	2.5.1.15		base_tigr	base_ec	base_ec	
ATP-dependent zinc metalloprotease FtsH	3.4.24.-	ftsH	membrane protease FtsH catalytic subunit (EC 3.4.24.-)	3.4.24.-	CDS	Cell division protein FtsH	3.4.24.-		gs-sh	gs-sh	gs-sh	
ribosomal RNA large subunit methyltransferase J	2.1.1.166	rrmJ	23S rRNA Um-2552 2'-O-methyltransferase (EC 2.1.1.166)	2.1.1.166	CDS	Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E ## LSU rRNA Um2552	2.1.1.-		base_tigr	gs-sh	gs-sh	
RNA-binding protein YhbY		yhbY	putative RNA-binding protein, YhbY family		CDS	FIG004454: RNA binding protein			lit-s	0	0	
transcription elongation factor greA		greA	transcription elongation factor GreA		CDS	Transcription elongation factor GreA			lit-s	lit-s	lit-s	
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	3.4.16.4	dacB	D-Ala-D-Ala peptidase C. Serine peptidase. MEROPS family S13	3.4.16.4, 3.4.21.-	CDS	D-alanyl-D-alanine carboxypeptidase	3.4.16.4		base_tigr	base_ec	map	
obg family GTPase CgtA		cgtA	Obg family GTPase CgtA		CDS	GTP-binding protein Obg			lit-s	0	0	
conserved hypothetical protein			Predicted permeases		CDS	Permease of the drug/metabolite transporter (DMT) superfamily			base_one HP	base_one HP	0	
ribosomal protein L27		rpmA	LSU ribosomal protein L27P		CDS	LSU ribosomal protein L27p			base_tigr	map	lit-s	
ribosomal protein L21		rplU	LSU ribosomal protein L21P		CDS	LSU ribosomal protein L21p			base_tigr	map	lit-s	
octaprenyl-diphosphate synthase	2.5.1.90	ispB	Geranylgeranyl pyrophosphate synthase	2.5.1.90	CDS	COG0142: Geranylgeranyl pyrophosphate synthase			base_ec	gs-sh	lit-s	
winged helix-turn-helix DNA-binding family protein			transcriptional regulator, Nlp family		CDS	Ner-like regulatory protein			0	0	0	
UDP-N-acetylglucosamine 1-carboxyvinyltransferase	2.5.1.7	murA	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	2.5.1.7	CDS	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	2.5.1.7		base_tigr	base_lit-s	base_ec	
bolA-like family protein			Predicted transcriptional regulator, BolA superfamily		CDS	YrbA protein			gs-sh	0	0	
putative phospholipid ABC transporter-binding protein mlaB			Predicted NTP binding protein (contains STAS domain)		CDS	Uncharacterized protein YrbB			gs-sh	0	0	
putative phospholipid-binding protein mlaC			ABC-type transport system involved in resistance to organic solvents, auxiliary component		CDS	"Uncharacterized ABC transporter, auxiliary component YrbC"			gs-sh	0	0	
putative phospholipid ABC transporter-binding protein mlaD			ABC-type transport system involved in resistance to organic solvents, periplasmic component		CDS	"Uncharacterized ABC transporter, periplasmic component YrbD"			gs-sh	0	0	
putative phospholipid ABC transporter permease protein mlaE			conserved hypothetical integral membrane protein		CDS	"Uncharacterized ABC transporter, permease component YrbE"			gs-sh	0	0	
putative phospholipid import ATP-binding protein MlaF			ABC-type transport system involved in resistance to organic solvents, ATPase component		CDS	"Uncharacterized ABC transporter, ATP-binding protein YrbF"			0	0	0	
inner membrane protein yrbG		yrbG	K+-dependent Na+/Ca+ exchanger related-protein		CDS	"Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter"			gs-sh	0	0	
arabinose 5-phosphate isomerase KdsD	5.3.1.13	kdsD	KpsF/GutQ family protein	5.3.1.13	CDS	Arabinose 5-phosphate isomerase	5.3.1.13		base_ec	base_ec	base_ec	
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC	3.1.3.45	kdsC	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family	3.1.3.45	CDS	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	3.1.3.45		base_ec	base_ec	base_ec	
lipopolysaccharide export system protein lptC		lptC	Uncharacterized protein conserved in bacteria		CDS	Uncharacterized protein YrbK clustered with lipopolysaccharide transporters			gs-sh	0	0	
lipopolysaccharide transport periplasmic protein LptA		lptA	lipopolysaccharide transport periplasmic protein LptA		CDS	"LptA, protein essential for LPS transport across the periplasm"			base_lit-s	0	0	
lipopolysaccharide export system ATP-binding protein LptB	3.6.3.-	lptB	ABC-type (unclassified) transport system, ATPase component	3.6.3.-	CDS	"Lipopolysaccharide ABC transporter, ATP-binding protein LptB"			gs-sh	0	0	
RNA polymerase sigma-54 factor		rpoN	RNA polymerase, sigma 54 subunit, RpoN/SigL		CDS	RNA polymerase sigma-54 factor RpoN			base_tigr	gs-sh	gs-sh	
ribosomal subunit interface protein		raiA	ribosomal subunit interface protein		CDS	Ribosome hibernation protein YhbH			base_lit-s	gs-sh	gs-sh	
PTS IIA-like nitrogen-regulatory protein PtsN		ptsN	PTS IIA-like nitrogen-regulatory protein PtsN	2.7.1.69	CDS	PTS IIA-like nitrogen-regulatory protein PtsN			base_lit-s	base_lit-s	base_lit-s	
conserved hypothetical protein			Predicted P-loop-containing kinase		CDS	FIG000506: Predicted P-loop-containing kinase			base_one HP	base_one HP	lit-s	
phosphocarrier protein NPr	2.7.11.-	ptsO	HPr-like nitrogen-regulatory protein NPr		CDS	"Phosphocarrier protein, nitrogen regulation associated"			gs-sh	0	0	
monofunctional biosynthetic peptidoglycan transglycosylase	2.4.2.-	mtgA	monofunctional biosynthetic peptidoglycan transglycosylase	2.4.1.-	CDS	Monofunctional biosynthetic peptidoglycan transglycosylase	2.4.2.-		base_lit-s	lit-s	lit-s	
phoP regulatory network YrbL family protein			PhoP regulatory network protein YrbL.		CDS	Putative uncharacterized protein YrbL			lit-s	0	0	
enhancing lycopene biosynthesis protein 2		elbB	Uncharacterized protein involved in an early stage of isoprenoid biosynthesis		CDS	Sigma cross-reacting protein 27A			gs-sh	orth	orth	
aerobic respiration control sensor protein ArcB	2.7.13.3	arcB	PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3)	2.7.13.3	CDS	Aerobic respiration control sensor protein arcB	2.7.3.-		base_ec	lit-s	gs-sh	
radical SAM superfamily protein			radical SAM protein, TIGR01212 family		CDS	COG1242: Predicted Fe-S oxidoreductase			lit-s	0	0	
glutamate synthase [NADPH] large chain	1.4.1.13	gltB	glutamate synthase (NADPH) large subunit	1.4.1.14, 1.4.1.13,1.4.1.13	CDS	Glutamate synthase [NADPH] large chain	1.4.1.13		base_ec-d	base_ec	base_ec-d	
glutamate synthase [NADPH] small chain	1.4.1.13	gltD	glutamate synthase (NADPH) small subunit	1.4.1.14, 1.4.1.13,1.4.1.13	CDS	Glutamate synthase [NADPH] small chain	1.4.1.13		base_ec-d	base_ec	base_ec-d	
conserved hypothetical protein			Protein of unknown function (DUF1120).		CDS	Beta-fimbriae probable major subunit			base_one HP	base_one HP	0	
conserved hypothetical protein			P pilus assembly protein, chaperone PapD		CDS	Beta-fimbriae chaperone protein			base_one HP	base_one HP	0	
type VII secretion system (T7SS), usher family protein			P pilus assembly protein, porin PapC		CDS	Beta-fimbriae usher protein			0	0	0	
secF domain protein			hypothetical protein		CDS	"PTS system, mannitol-specific IIABC component (EIIABC-Mtl) (Mannitol- permease IIABC component) (Phosphotransferase enzyme II, ABC component)"	2.7.1.69		base_one HP	0	base_one HP	
transposase DDE domain protein			Transposase and inactivated derivatives, IS5 family		CDS	Mobile element protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	Uncharacterized protein yhcE			lit-s	base_one HP	base_one HP	
fimbrial family protein			Protein of unknown function (DUF1120).		CDS	Beta-fimbriae probable major subunit			0	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Putative uncharacterized protein YhcG			base_one HP	base_one HP	0	
conserved hypothetical protein			uncharacterized protein, YhcH/YjgK/YiaL family		CDS	Putative sugar isomerase involved in processing of exogenous sialic acid			base_one HP	base_one HP	0	
ROK family protein			N-acetylmannosamine kinase (EC 2.7.1.60)	2.7.1.60	CDS	N-acetylmannosamine kinase	2.7.1.60		0	0	base_ec	
putative N-acetylmannosamine-6-phosphate 2-epimerase			Putative N-acetylmannosamine-6-phosphate epimerase	5.1.3.9	CDS	N-acetylmannosamine-6-phosphate 2-epimerase	5.1.3.9		map	lit-s	base_ec	
putative sialic acid transporter			putative sialic acid transporter		CDS	Sialic acid transporter (permease) NanT			base_lit-s	0	0	
N-acetylneuraminate lyase	4.1.3.3	nanA	N-acetylneuraminate lyase	4.1.3.3	CDS	N-acetylneuraminate lyase	4.1.3.3		base_lit-s	base_lit-s	base_lit-s	
bacterial regulatory s, gntR family protein			transcriptional regulator, GntR family		CDS	Transcriptional regulator NanR			gs-sh	map	orth	
putative cryptic C4-dicarboxylate transporter DcuD			c4-dicarboxylate anaerobic carrier family protein		CDS	Putative cryptic C4-dicarboxylate transporter DcuD			0	lit-s	0	
stringent starvation protein B		sspB	Stringent starvation protein B		CDS	ClpXP protease specificity-enhancing factor / Stringent starvation protein B			lit-s	0	0	
glutathione S-transferase, C-terminal domain protein			Glutathione S-transferase		CDS	Stringent starvation protein A			lit-s	map	orth	
30S ribosomal protein S9		rpsI	SSU ribosomal protein S9P		CDS	SSU ribosomal protein S9p (S16e)			gs-sh	0	0	
ribosomal protein L13		rplM	LSU ribosomal protein L13P		CDS	LSU ribosomal protein L13p (L13Ae)			base_tigr	0	0	
conserved hypothetical protein			Predicted ATPase		CDS	"ATPase, AFG1 family"			base_one HP	base_one HP	0	
putative cytochrome d ubiquinol oxidase subunit 3			Uncharacterized protein conserved in bacteria		CDS	Putative cytochrome d ubiquinol oxidase subunit III (Cytochrome bd-I oxidase subunit III)	1.10.3.-		0	0	0	
protease degQ	3.4.21.-	degQ	DegQ peptidase. Serine peptidase. MEROPS family S01B	3.4.21.-	CDS	"Outer membrane stress sensor protease DegQ, serine protease"			gs-sh	gs-sh	pfam-sh	
periplasmic serine peptidase DegS	3.4.21.-	degS	DegS peptidase. Serine peptidase. MEROPS family S01B	3.4.21.-	CDS	Outer membrane stress sensor protease DegS			base_tigr	pfam-sh	pfam-sh	
malate dehydrogenase, NAD-dependent	1.1.1.37	mdh	malate dehydrogenase (NAD) (EC 1.1.1.37)	1.1.1.37	CDS	Malate dehydrogenase	1.1.1.37		base_tigr	base_ec	base_ec	
arginine repressor		argR	transcriptional regulator, ArgR family		CDS	"Arginine pathway regulatory protein ArgR, repressor of arg regulon"			base_tigr	gs-sh	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF1471).		CDS	probable exported protein YPO3518			base_one HP	base_one HP	0	
conserved hypothetical protein			Barstar, RNAse (barnase) inhibitor		CDS	probable ribonuclease inhibitor YPO3690			base_one HP	base_one HP	0	
p-hydroxybenzoic acid efflux pump subunit AaeB		aaeB	Predicted membrane protein		CDS	FUSARIC ACID RESISTANCE PROTEIN FUSB / FUSARIC ACID RESISTANCE PROTEIN FUSC			gs-sh	0	0	
efflux transporter, RND family, MFP subunit			RND family efflux transporter, MFP subunit		CDS	Fusaric acid resistance protein fusE			base_tigr	map	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF1656).		CDS	probable membrane protein YPO3684			base_one HP	base_one HP	0	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	Putative transcriptional regulator LYSR-type			gs-sh	0	0	
modulator of DNA gyrase family protein			microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62		CDS	"TldD protein, part of TldE/TldD proteolytic complex"			0	0	gs-sh	
conserved hypothetical protein			TIGR02099 family protein		CDS	FIG005080: Possible exported protein			base_one HP	base_one HP	0	
ribonuclease G	3.1.26.-	rng	RNAse G	3.1.26.-,3.1.4.-	CDS	Cytoplasmic axial filament protein CafA and Ribonuclease G	3.1.4.-		gs-sh	gs-sh	gs-sh	
septum formation protein Maf		maf	MAF protein		CDS	Septum formation protein Maf			base_tigr	lit-s	map	
rod shape-determining protein MreD		mreD	rod shape-determining protein MreD		CDS	Rod shape-determining protein MreD			base_lit-s	lit-s	lit-s	
rod shape-determining protein MreC		mreC	rod shape-determining protein MreC		CDS	Rod shape-determining protein MreC			base_lit-s	lit-s	lit-s	
rod shape-determining protein mreB		mreB	rod shape-determining protein MreB		CDS	Rod shape-determining protein MreB			lit-s	lit-s	lit-s	
RNase E specificity factor CsrD		csrD	diguanylate cyclase/phosphodiesterase		CDS	Putative lipoprotein			gs-sh	map	orth	
putative quinone oxidoreductase YhdH			putative quinone oxidoreductase, YhdH/YhfP family		CDS	"YhdH, a putative quinone oxidoreductase"			orth	0	0	
conserved hypothetical protein						FIG00639877: hypothetical protein			base_one HP	base_one HP	base_one miss	
acetyl-CoA carboxylase, biotin carboxyl carrier protein		accB	biotin carboxyl carrier protein		CDS	Biotin carboxyl carrier protein of acetyl-CoA carboxylase			base_tigr	lit-s	orth	
acetyl-CoA carboxylase, biotin carboxylase subunit	6.3.4.14	accC	acetyl-CoA carboxylase, biotin carboxylase subunit	6.4.1.2, 6.3.4.14	CDS	Biotin carboxylase of acetyl-CoA carboxylase	6.3.4.14		base_lit-s	base_ec	base_ec-d	
conserved hypothetical protein			Predicted membrane protein		CDS	FIG003021: Membrane protein			base_one HP	base_one HP	lit-s	
sodium/pantothenate symporter		panF	sodium/pantothenate symporter		CDS	Pantothenate:Na+ symporter (TC 2.A.21.1.1)			base_lit-s	0	0	
ribosomal protein L11 methyltransferase	2.1.1.-	prmA	[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC 2.1.1.-)	2.1.1.-	CDS	Ribosomal protein L11 methyltransferase	2.1.1.-		base_tigr	lit-s	map	
tRNA-dihydrouridine synthase B	1.-.-.-	dusB	tRNA-U20-dihydrouridine synthase	1.-	CDS	tRNA dihydrouridine synthase B	1.-.-.-		gs-sh	gs-sh	gs-sh	
DNA-binding protein fis		fis	DNA-binding protein Fis		CDS	DNA-binding protein Fis			lit-s	lit-s	base_lit-s	
DNA adenine methyltransferase YhdJ	2.1.1.72	yhdJ	DNA modification methylase	2.1.1.72	CDS	Adenine-specific methyltransferase	2.1.1.72		base_ec	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF2556).		CDS	Putative periplasmic protein			base_one HP	base_one HP	0	
putative acrEF/envCD operon repressor			transcriptional regulator, TetR family		CDS	"Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family"			orth	map	pfam-sh	
acriflavine resistance protein A		acrA	RND family efflux transporter, MFP subunit		CDS	Acriflavine resistance protein E (AcrE)			gs-sh	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
RND transporter, hydrophobe/amphiphile efflux-1 family protein			The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family		CDS	"RND efflux system, inner membrane transporter CmeB"			base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	probable lipoprotein			lit-s	base_one HP	base_one HP	
putative membrane protein			hypothetical protein		CDS	FIG00642917: hypothetical protein			base_one HP	0	base_one HP	
bacterial extracellular solute-binding s, 3 family protein			amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)		CDS	Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4)			0	0	0	
amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein			amino acid ABC transporter membrane protein 1, PAAT family (TC 3.A.1.3.-)		CDS	Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)			base_tigr	0	0	
inner membrane amino-acid ABC transporter permease protein yhdY		yhdY	amino acid ABC transporter membrane protein 2, PAAT family (TC 3.A.1.3.-)		CDS	Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4)			gs-sh	0	0	
conserved hypothetical protein			amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-)	3.6.3.-	CDS	"ABC-type polar amino acid transport system, ATPase component"			base_one HP	base_one HP	0	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
conserved hypothetical protein			Protein of unknown function (DUF1488).		CDS	FIG034389 (not subsystem-based): hypothetical protein			base_one HP	base_one HP	0	
protein YrdA		yrdA	Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily		CDS	"carbonic anhydrase, family 3"			gs-sh	orth	orth	
shikimate dehydrogenase	1.1.1.25	aroE	shikimate dehydrogenase (EC 1.1.1.25)	1.1.1.25	CDS	Shikimate 5-dehydrogenase I alpha	1.1.1.25		base_ec	base_ec	base_ec	
tRNA threonylcarbamoyladenosine biosynthesis protein RimN		rimN	translation factor SUA5		CDS	TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA			gs-sh	gs-sh	gs-sh	
			Zn-finger domain associated with topoisomerase type I		CDS				base_one miss	base_both miss	base_one miss	
						FIG00640137: hypothetical protein			base_both miss	base_one miss	base_one miss	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Protein of unknown function Smg			base_one HP	base_one HP	0	
DNA protecting protein DprA		dprA	DNA protecting protein DprA		CDS	Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake			base_lit-s	0	0	
peptide deformylase	3.5.1.88	def	peptide deformylase (EC 3.5.1.88)	3.5.1.88	CDS	Peptide deformylase	3.5.1.88		base_tigr	base_ec	base_ec	
methionyl-tRNA formyltransferase	2.1.2.9	fmt	methionyl-tRNA formyltransferase (EC 2.1.2.9)	2.1.2.9	CDS	Methionyl-tRNA formyltransferase	2.1.2.9		base_tigr	base_ec	base_ec	
ribosomal RNA small subunit methyltransferase B	2.1.1.-	sun	16S rRNA m(5)C-967 methyltransferase (EC 2.1.1.176)	2.1.1.176	CDS	16S rRNA (cytosine(967)-C(5))-methyltransferase ## SSU rRNA m5C967	2.1.1.176		base_tigr	gs-sh	base_ec	
trk system potassium uptake protein trkA		trkA	K+ transport systems, NAD-binding component		CDS	Trk system potassium uptake protein TrkA			gs-sh	lit-s	gs-sh	
			Uncharacterized protein conserved in bacteria		CDS				base_one miss	base_both miss	base_one miss	
large conductance mechanosensitive channel protein		mscL	large conductance mechanosensitive channel protein		CDS	Large-conductance mechanosensitive channel			base_lit-s	gs-sh	orth	
zn(II)-responsive transcriptional regulator		zntR	Zn(II)-responsive transcriptional regulator		CDS	HTH-type transcriptional regulator zntR			base_tigr	gs-sh	gs-sh	
conserved hypothetical protein			Domain of unknown function (DUF1992).		CDS	FIG004614: Putative cytoplasmic protein			base_one HP	base_one HP	0	
ribosomal protein L17		rplQ	LSU ribosomal protein L17P		CDS	LSU ribosomal protein L17p			base_tigr	map	lit-s	
DNA-directed RNA polymerase, alpha subunit	2.7.7.6	rpoA	DNA-directed RNA polymerase subunit alpha (EC 2.7.7.6)	2.7.7.6	CDS	DNA-directed RNA polymerase alpha subunit	2.7.7.6		base_tigr	base_ec	base_ec	
ribosomal protein S4		rpsD	SSU ribosomal protein S4P		CDS	SSU ribosomal protein S4p (S9e)			base_tigr	0	0	
30S ribosomal protein S11		rpsK	SSU ribosomal protein S11P		CDS	SSU ribosomal protein S11p (S14e)			base_tigr	0	0	
30S ribosomal protein S13		rpsM	SSU ribosomal protein S13P		CDS	SSU ribosomal protein S13p (S18e)			base_tigr	0	0	
preprotein translocase, SecY subunit		secY	protein translocase subunit secY/sec61 alpha		CDS	Preprotein translocase secY subunit (TC 3.A.5.1.1)			base_tigr	lit-s	gs-sh	
ribosomal protein L15		rplO	LSU ribosomal protein L15P		CDS	LSU ribosomal protein L15p (L27Ae)			base_tigr	0	0	
ribosomal protein L30		rpmD	LSU ribosomal protein L30P		CDS	LSU ribosomal protein L30p (L7e)			base_tigr	0	0	
ribosomal protein S5		rpsE	SSU ribosomal protein S5P		CDS	SSU ribosomal protein S5p (S2e)			base_tigr	0	0	
ribosomal protein L18		rplR	LSU ribosomal protein L18P		CDS	LSU ribosomal protein L18p (L5e)			base_tigr	0	0	
ribosomal protein L6		rplF	LSU ribosomal protein L6P		CDS	LSU ribosomal protein L6p (L9e)			base_tigr	0	0	
30S ribosomal protein S8		rpsH	Ribosomal protein S8		CDS	SSU ribosomal protein S8p (S15Ae)			gs-sh	0	0	
ribosomal S14p/S29e family protein			SSU ribosomal protein S14P		CDS	"SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent"			0	0	0	
50S ribosomal protein L5		rplE	LSU ribosomal protein L5P		CDS	LSU ribosomal protein L5p (L11e)			gs-sh	0	0	
ribosomal protein L24		rplX	LSU ribosomal protein L24P		CDS	LSU ribosomal protein L24p (L26e)			base_tigr	0	0	
ribosomal protein L14		rplN	LSU ribosomal protein L14P		CDS	LSU ribosomal protein L14p (L23e)			base_tigr	0	0	
30S ribosomal protein S17		rpsQ	SSU ribosomal protein S17P		CDS	SSU ribosomal protein S17p (S11e)			base_tigr	0	0	
ribosomal protein L29		rpmC	LSU ribosomal protein L29P		CDS	LSU ribosomal protein L29p (L35e)			base_tigr	0	0	
ribosomal protein L16		rplP	LSU ribosomal protein L16P		CDS	LSU ribosomal protein L16p (L10e)			base_tigr	0	0	
ribosomal protein S3		rpsC	SSU ribosomal protein S3P		CDS	SSU ribosomal protein S3p (S3e)			base_tigr	0	0	
ribosomal protein L22		rplV	LSU ribosomal protein L22P		CDS	LSU ribosomal protein L22p (L17e)			base_tigr	0	0	
30S ribosomal protein S19		rpsS	SSU ribosomal protein S19P		CDS	SSU ribosomal protein S19p (S15e)			gs-sh	0	0	
ribosomal protein L2		rplB	LSU ribosomal protein L2P		CDS	LSU ribosomal protein L2p (L8e)			base_tigr	0	0	
50S ribosomal protein L23		rplW	LSU ribosomal protein L23P		CDS	LSU ribosomal protein L23p (L23Ae)			gs-sh	0	0	
50S ribosomal protein L4		rplD	LSU ribosomal protein L4P		CDS	LSU ribosomal protein L4p (L1e)			base_tigr	0	0	
50S ribosomal protein L3		rplC	LSU ribosomal protein L3P		CDS	LSU ribosomal protein L3p (L3e)			base_tigr	0	0	
ribosomal protein S10		rpsJ	SSU ribosomal protein S10P		CDS	SSU ribosomal protein S10p (S20e)			base_tigr	0	0	
protein pioO		pioO	type II secretion system protein B		CDS	PioO protein			gs-sh	lit-s	map	
putative general secretion pathway protein A			type II secretion system protein A		CDS	General secretion pathway protein A			0	lit-s	0	
type II secretion system protein C		gspC	type II secretion system protein C (GspC)		CDS	General secretion pathway protein C			base_tigr	0	0	
type II secretion system protein D		gspD	type II secretion system protein D (GspD)		CDS	General secretion pathway protein D			base_tigr	orth	tf_idf	
type II secretion system protein E		gspE	general secretory pathway protein E		CDS	General secretion pathway protein E			base_tigr	tf_idf	orth	
type II secretion system protein F		gspF	type II secretion system protein F (GspF)		CDS	General secretion pathway protein F			base_tigr	orth	tf_idf	
type II secretion system protein G		gspG	type II secretion system protein G (GspG)		CDS	General secretion pathway protein G			gs-sh	orth	map	
type II secretion system protein H		gspH	type II secretion system protein H (GspH)		CDS	General secretion pathway protein H			gs-sh	0	0	
type II secretion system protein I		gspI	type II secretion system protein I (GspI)		CDS	General secretion pathway protein I			gs-sh	0	0	
prepilin-type N-terminal cleavage/methylation domain protein			type II secretion system protein J (GspJ)		CDS	General secretion pathway protein J			0	0	0	
type II secretion system (T2SS), K family protein			type II secretion system protein K (GspK)		CDS	General secretion pathway protein K			0	0	0	
type II secretion system protein L		gspL	type II secretion system protein L (GspL)		CDS	General secretion pathway protein L			base_tigr	0	0	
type II secretion system (T2SS), M family protein			type II secretion system protein M (GspM)		CDS	General secretion pathway protein M			0	0	0	
type 4 prepilin-like proteins leader peptide-processing enzyme	2.1.1.-	hofD	type 4 prepilin peptidase 1 (EC:3.4.23.43). Aspartic peptidase. MEROPS family A24A	3.4.23.43, 2.1.1.-	CDS	Leader peptidase HopD			gs-sh	0	0	
bacterioferritin		bfr	bacterioferritin		CDS	Bacterioferritin			base_lit-s	lit-s	lit-s	
bacterioferritin-associated ferredoxin		bfd	Bacterioferritin-associated ferredoxin		CDS	Bacterioferritin-associated ferredoxin			lit-s	lit-s	base_lit-s	
putative bifunctional chitinase/lysozyme			Carbohydrate binding domain.	3.2.1.14, 3.2.1.17	CDS	Chitinase	3.2.1.14		0	0	base_ec-d	
translation elongation factor Tu		tuf	translation elongation factor TU		CDS	Translation elongation factor Tu			lit-s	lit-s	lit-s	
translation elongation factor G		fusA	translation elongation factor 2 (EF-2/EF-G)		CDS	Translation elongation factor G			gs-sh	lit-s	map	
ribosomal protein S7		rpsG	SSU ribosomal protein S7P		CDS	SSU ribosomal protein S7p (S5e)			base_tigr	0	0	
ribosomal protein S12		rpsL	SSU ribosomal protein S12P		CDS	SSU ribosomal protein S12p (S23e)			base_tigr	0	0	
sulfur relay protein TusB/DsrH	2.8.-.-	dsrH	sulfur relay protein TusB/DsrH		CDS	tRNA 5-methylaminomethyl-2-thiouridine synthase TusB			base_lit-s	gs-sh	gs-sh	
sulfur relay protein TusC/DsrF		tusC	sulfur relay protein TusC/DsrF		CDS	tRNA 5-methylaminomethyl-2-thiouridine synthase TusC			base_lit-s	gs-sh	gs-sh	
sulfurtransferase TusD	2.8.1.-	tusD	sulfur relay protein TusD/DsrE	2.8.1.-	CDS	tRNA 5-methylaminomethyl-2-thiouridine synthase TusD			gs-sh	gs-sh	gs-sh	
sensory box protein			Uncharacterized protein conserved in bacteria		CDS	YheO-like PAS domain			0	0	0	
FKBP-type peptidyl-prolyl cis-trans isomerase fkpA	5.2.1.8	fkpA	FKBP-type peptidyl-prolyl cis-trans isomerases 1	5.2.1.8	CDS	FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor	5.2.1.8		base_ec	base_ec	base_ec	
slyX family protein			Uncharacterized protein conserved in bacteria		CDS	Protein slyX			gs-sh	lit-s	gs-sh	
FKBP-type peptidyl-prolyl cis-trans isomerase slyD	5.2.1.8	slyD	FKBP-type peptidyl prolyl cis-trans isomerase/Apo-metallochaperone SlyD	5.2.1.8	CDS	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD	5.2.1.8		base_ec	base_ec	base_ec	
conserved hypothetical protein			conserved hypothetical metal-binding protein		CDS	"Putative cytoplasmic protein ,probably associated with Glutathione-regulated potassium-efflux"			base_one HP	base_one HP	0	
glutathione-regulated potassium-efflux system protein kefB		kefB	Kef-type potassium/proton antiporter, CPA2 family (TC 2.A.37.1)		CDS	Glutathione-regulated potassium-efflux system protein KefB			gs-sh	lit-s	gs-sh	
flavodoxin-like fold family protein			Kef-type potassium/proton antiporter accessory protein, CPA2 family (TC 2.A.37.1)		CDS	Glutathione-regulated potassium-efflux system ancillary protein KefG			0	0	0	
conserved hypothetical protein			ATPase components of ABC transporters with duplicated ATPase domains		CDS	Glutathione-regulated potassium-efflux system ATP-binding protein			base_one HP	base_one HP	0	
alpha/beta hydrolase fold family protein			Predicted hydrolase of the alpha/beta-hydrolase fold		CDS	"Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase"			0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG01199774: hypothetical protein			base_one HP	base_one HP	lit-s	
phosphoribulokinase / Uridine kinase family protein			Phosphoribulokinase	2.7.1.19	CDS	"Phosphoribulokinase homolog, function unknown"	2.7.1.19		0	0	base_ec	
protein yhfA		yhfA	Predicted redox protein, regulator of disulfide bond formation		CDS	OsmC/Ohr family protein			gs-sh	orth	map	
bacterial regulatory s, crp family protein			cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases		CDS	Cyclic AMP receptor protein			0	0	0	
integral membrane , YccS/YhfK family protein			integral membrane protein, YccS/YhfK family		CDS	FIG00638035: hypothetical protein			base_tigr	0	0	
acetylornithine/succinyldiaminopimelate aminotransferase	2.6.1.17	argD	acetylornithine and succinylornithine transaminases/succinylornithine transaminase family	2.6.1.11, 2.6.1.17	CDS	"Acetylornithine aminotransferase / N-succinyl-L,L-diaminopimelate aminotransferase"	2.6.1.11, 2.6.1.17		base_ec-d	base_ec-d	base_ec	
para-aminobenzoate synthase glutamine amidotransferase component II	2.6.1.85	pabA	aminodeoxychorismate synthase, glutamine amidotransferase subunit	2.6.1.85	CDS	"Para-aminobenzoate synthase, amidotransferase component # PabAb"	2.6.1.85		base_ec	base_ec	base_ec	
putative adenosine monophosphate-protein transferase fic			Protein involved in cell division		CDS	Cell filamentation protein fic			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2559).		CDS	FIG01045643: hypothetical protein			base_one HP	base_one HP	lit-s	
peptidyl-prolyl cis-trans isomerase A	5.2.1.8	ppiA	Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	5.2.1.8	CDS	Peptidyl-prolyl cis-trans isomerase PpiA precursor	5.2.1.8		base_ec	base_ec	base_ec	
protein tsgA		tsgA	Major Facilitator Superfamily.		CDS	TsgA protein homolog			gs-sh	lit-s	map	
nitrite reductase [NAD(P)H], large subunit	1.7.1.4	nirB	assimilatory nitrite reductase (NAD(P)H) large subunit precursor (EC 1.7.1.4)	1.7.1.4	CDS	Nitrite reductase [NAD(P)H] large subunit	1.7.1.4		base_tigr	base_ec	base_ec	
nitrite reductase [NAD(P)H] small subunit	1.7.1.4	nirD	assimilatory nitrite reductase (NAD(P)H) small subunit (EC 1.7.1.4)	1.7.1.4	CDS	Nitrite reductase [NAD(P)H] small subunit	1.7.1.4		base_ec	base_ec	base_ec	
putative nitrite transporter			formate/nitrite transporter		CDS	Nitrite transporter NirC			orth	tf_idf	map	
siroheme synthase	4.99.1.4	cysG	uroporphyrinogen-III C-methyltransferase/precorrin-2 dehydrogenase	1.3.1.76, 2.1.1.107, 4.99.1.4,2.1.1.107, 1.3.1.76	CDS	Siroheme synthase / Precorrin-2 oxidase / Sirohydrochlorin ferrochelatase / Uroporphyrinogen-III methyltransferase	1.3.1.76, 4.99.1.4, 2.1.1.107		base_ec-d	base_ec-d	base_ec-d	
conserved hypothetical protein			Protein of unknown function (DUF4223).		CDS	putative outer membrane lipoprotein			base_one HP	base_one HP	0	
amino acid permease family protein			fructoselysine transporter, APC superfamily (TC 2.A.3)		CDS	"Fructoselysine transporter FrlA, cationic amino acid permease"			0	0	0	
SIS domain protein			Predicted phosphosugar isomerases		CDS	Fructoselysine 6-phosphate deglycase	3.5.-.-		0	0	0	
xylose isomerase-like TIM barrel family protein			Sugar phosphate isomerases/epimerases		CDS	Fructoselysine 3-epimerase			0	0	0	
pfkB carbohydrate kinase family protein			Sugar kinases, ribokinase family	2.7.1.-	CDS	Fructoselysine kinase	2.7.1.-		gs-sh	0	0	
HTH-type transcriptional regulator frlR		frlR	transcriptional regulator, GntR family		CDS	Transcriptional regulator of fructoselysine utilization operon FrlR			gs-sh	0	0	
aminotransferase class-V family protein			Aminotransferase class I and II.		CDS	Aspartate aminotransferase family			0	0	0	
conserved hypothetical protein			Signal transduction histidine kinase, glucose-6-phosphate specific		CDS	FIG006427: Putative transport system permease protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain		CDS	FIG128630: Hypothetical protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Predicted metal-dependent hydrolase with the TIM-barrel fold		CDS	Phosphotriesterase like protein			base_one HP	base_one HP	0	
type I phosphodiesterase / nucleotide pyrophosphatase family protein			Phosphopentomutase		CDS	Phosphopentomutase like	5.4.2.7		0	0	lit-s	
alanine racemase, N-terminal domain protein			Predicted amino acid racemase		CDS	Protein containing an Alanine Racemase Domain			0	lit-s	0	
PRD domain protein			PRD domain.		CDS	Protein containing PTS-regulatory domain			lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	Hypothetical protein YhfZ			lit-s	base_one HP	base_one HP	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
tryptophan--tRNA ligase	6.1.1.2	trpS	tryptophanyl-tRNA synthetase (EC 6.1.1.2)	6.1.1.2	CDS	Tryptophanyl-tRNA synthetase	6.1.1.2		base_tigr	base_ec	base_ec	
phosphoglycolate phosphatase, bacterial	3.1.3.18	gph	phosphoglycolate phosphatase	3.1.3.18	CDS	Phosphoglycolate phosphatase	3.1.3.18		base_ec	base_ec	base_ec	
ribulose-phosphate 3-epimerase	5.1.3.1	rpe	ribulose-5-phosphate 3-epimerase (EC 5.1.3.1)	5.1.3.1	CDS	Ribulose-phosphate 3-epimerase	5.1.3.1		base_tigr	base_ec	base_ec	
DNA adenine methylase	2.1.1.72	dam	DNA adenine methylase Dam	2.1.1.72	CDS	Methyl-directed repair DNA adenine methylase	2.1.1.72		base_ec	base_ec	base_ec	
protein damX		damX	Uncharacterized protein conserved in bacteria		CDS	"DamX, an inner membrane protein involved in bile resistance"			gs-sh	0	0	
3-dehydroquinate synthase	4.2.3.4	aroB	3-dehydroquinate synthase (EC 4.2.3.4)	4.2.3.4	CDS	3-dehydroquinate synthase	4.2.3.4		base_tigr	base_lit-s	base_ec	
shikimate kinase 1	2.7.1.71	aroK	shikimate kinase (EC 2.7.1.71)	2.7.1.71	CDS	Shikimate kinase I	2.7.1.71		base_ec	base_ec	base_ec	
type IV pilus secretin PilQ family protein		pilQ	type IV pilus secretin (or competence protein) PilQ		CDS	Type IV pilus biogenesis protein PilQ			base_tigr	gs-sh	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF2531).		CDS	Type IV pilus biogenesis protein PilP			base_one HP	base_one HP	gs-sh	
putative protein involved in utilization of DNA as a carbon source			hypothetical protein		CDS	Type IV pilus biogenesis protein PilO			base_one HP	0	base_one HP	
fimbrial assembly family protein			Tfp pilus assembly protein PilN		CDS	Type IV pilus biogenesis protein PilN			0	0	pfam-sh	
conserved hypothetical protein			hypothetical protein		CDS	Type IV pilus biogenesis protein PilM			lit-s	base_one HP	base_one HP	
penicillin-binding protein 1A	3.4.-.-	mrcA	penicillin-binding protein, 1A family	2.4.1.-, 3.4.-	CDS	Multimodular transpeptidase-transglycosylase	2.4.1.129, 3.4.-.-		lit-s	gs-sh	map	
ADP compounds hydrolase nudE	3.6.1.-	nudE	NTP pyrophosphohydrolases including oxidative damage repair enzymes	3.6.1.-	CDS	ADP compounds hydrolase NudE	3.6.1.-		gs-sh	lit-s	map	
conserved hypothetical protein			Intracellular growth attenuator protein IgaA.		CDS	IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system			base_one HP	base_one HP	0	
HAD hydrolase, IA, variant 3 family protein			haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED		CDS	FIG001957: putative hydrolase			base_tigr	0	0	
heat shock protein 15		hslR	heat shock protein Hsp15		CDS	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)			gs-sh	0	0	
33 kDa chaperonin		hslO	Disulfide bond chaperones of the HSP33 family		CDS	33 kDa chaperonin (Heat shock protein 33) (HSP33)			gs-sh	tf_idf	pfam-sh	
conserved hypothetical protein			Predicted membrane-associated, metal-dependent hydrolase		CDS	Putative transport protein			base_one HP	base_one HP	0	
phosphoenolpyruvate carboxykinase	4.1.1.49	pckA	phosphoenolpyruvate carboxykinase (ATP)	4.1.1.49	CDS	Phosphoenolpyruvate carboxykinase [ATP]	4.1.1.49		base_tigr	base_ec	base_ec	
osmolarity sensor protein envZ	2.7.13.3	envZ	Signal transduction histidine kinase	2.7.13.3	CDS	Osmolarity sensory histidine kinase EnvZ			base_ec	0	0	
transcriptional regulatory protein ompR		ompR	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	Two-component system response regulator OmpR			gs-sh	gs-sh	gs-sh	
transcription elongation factor GreB		greB	transcription elongation factor GreB		CDS	Transcription elongation factor GreB			base_lit-s	lit-s	lit-s	
protein yhgF		yhgF	Transcriptional accessory protein		CDS	Transcription accessory protein (S1 RNA-binding domain)			gs-sh	0	0	
ferrous iron transport protein A		feoA	Fe2+ transport system protein A		CDS	Ferrous iron transport protein A			gs-sh	lit-s	orth	
ferrous iron transport protein B		feoB	ferrous iron transporter FeoB		CDS	Ferrous iron transport protein B			gs-sh	lit-s	map	
ferrous iron transport protein C		feoC	Predicted transcriptional regulators		CDS	Ferrous iron-sensisng transcriptional regulator FeoC			gs-sh	0	0	
conserved hypothetical family protein			conserved hypothetical protein (putative transposase or invertase)		CDS	"Putative transposase, YhgA family protein"			base_tigr	0	0	
pimelyl-[acyl-carrier protein] methyl ester esterase		bioH	carboxylesterase BioH (pimeloyl-CoA synthesis)	3.1.1.85	CDS	Biotin synthesis protein BioH			base_tigr	0	0	
comF family protein			comF family protein		CDS	"Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy"			base_lit-s	0	0	
fe/S biogenesis protein nfuA		nfuA	IscR-regulated protein YhgI		CDS	NfuA Fe-S protein maturation			gs-sh	0	0	
high-affinity gluconate transporter		gntT	gluconate permease GntT (TC 2.A.8.1.4)		CDS	High-affinity gluconate transporter GntT			gs-sh	gs-sh	gs-sh	
4-alpha-glucanotransferase	2.4.1.25	malQ	4-alpha-glucanotransferase	2.4.1.25	CDS	4-alpha-glucanotransferase (amylomaltase)	2.4.1.25		base_lit-s	base_ec	base_ec	
maltodextrin phosphorylase	2.4.1.1	malP	glycogen/starch/alpha-glucan phosphorylases	2.4.1.1	CDS	Maltodextrin phosphorylase	2.4.1.1		base_ec	base_ec	base_ec	
HTH-type transcriptional regulator malT		malT	ATP-dependent transcriptional regulator		CDS	"Transcriptional activator of maltose regulon, MalT"			gs-sh	gs-sh	gs-sh	
RNA 3'-phosphate cyclase	6.5.1.4	rtcA	RNA 3'-phosphate cyclase	6.5.1.4	CDS	RNA 3'-terminal phosphate cyclase	6.5.1.4		base_lit-s	base_ec	base_ec	
RNA-splicing ligase RtcB	6.5.1.-	rtcB	Uncharacterized conserved protein	6.5.1.3	CDS	"RNA-2',3'-PO4:RNA-5'-OH ligase"			gs-sh	0	0	
glycerol-3-phosphate regulon repressor		glpR	transcriptional regulator, DeoR family		CDS	"Glycerol-3-phosphate regulon repressor, DeoR family"			gs-sh	gs-sh	gs-sh	
sigma-54 interaction domain protein			Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain		CDS	Transcriptional regulatory protein RtcR			0	0	0	
rhomboid family protease GlpG	3.4.21.105	glpG	Uncharacterized membrane protein (homolog of Drosophila rhomboid)		CDS	GlpG protein (membrane protein of glp regulon)			gs-sh	gs-sh	gs-sh	
thiosulfate sulfurtransferase glpE	2.8.1.1	glpE	thiosulfate sulfurtransferase (EC 2.8.1.1)	2.8.1.1	CDS	Thiosulfate sulfurtransferase GlpE	2.8.1.1		base_ec	base_ec	base_ec	
aerobic glycerol-3-phosphate dehydrogenase	1.1.5.3	glpD	homodimeric glycerol 3-phosphate dehydrogenase (quinone) (EC 1.1.5.3)	1.1.5.3	CDS	Aerobic glycerol-3-phosphate dehydrogenase	1.1.5.3		base_ec	base_ec	base_ec	
putative transmembrane protein			hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
glycogen/starch/alpha-glucan phosphorylases family protein	2.4.1.1	glgP	glycogen/starch/alpha-glucan phosphorylases	2.4.1.1	CDS	Glycogen phosphorylase	2.4.1.1		base_tigr	base_ec	base_ec	
glycogen synthase	2.4.1.21	glgA	glycogen synthase (ADP-glucose)	2.4.1.21	CDS	"Glycogen synthase, ADP-glucose transglucosylase"	2.4.1.21		base_ec	base_ec	base_ec	
glucose-1-phosphate adenylyltransferase	2.7.7.27	glgC	glucose-1-phosphate adenylyltransferase	2.7.7.27	CDS	Glucose-1-phosphate adenylyltransferase	2.7.7.27		base_lit-s	base_ec	base_ec	
glycogen debranching enzyme GlgX	3.2.1.-	glgX	glycogen debranching enzyme GlgX	3.2.1.-	CDS	Glycogen debranching enzyme	3.2.1.-		base_lit-s	0	0	
1,4-alpha-glucan branching enzyme	2.4.1.18	glgB	alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase	2.4.1.18	CDS	"1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type"	2.4.1.18		base_tigr	base_ec	base_ec	
aspartate-semialdehyde dehydrogenase	1.2.1.11	asd	aspartate semialdehyde dehydrogenase (EC 1.2.1.11)	1.2.1.11	CDS	Aspartate-semialdehyde dehydrogenase	1.2.1.11		base_tigr	base_ec	base_ec	
conserved hypothetical protein			membrane protein, MarC family		CDS	Multiple antibiotic resistance protein marC			base_one HP	base_one HP	gs-sh	
low-affinity gluconate transporter		gntU	gluconate transporter		CDS	Low-affinity gluconate/H+ symporter GntU			gs-sh	0	0	
thermoresistant gluconokinase	2.7.1.12	gntK	carbohydrate kinase, thermoresistant glucokinase family	2.7.1.12	CDS	Gluconokinase	2.7.1.12		base_ec	base_ec	base_ec	
HTH-type transcriptional regulator gntR		gntR	transcriptional regulator, LacI family		CDS	Gluconate utilization system Gnt-I transcriptional repressor			gs-sh	gs-sh	orth	
putative quercetin 2,3-dioxygenase yhhW			Pirin-related protein		CDS	"Qercetin 2,3-dioxygenase"			gs-sh	0	0	
conserved hypothetical protein			Predicted dehydrogenases and related proteins		CDS	Putative oxidoreductase			base_one HP	base_one HP	0	
acetyltransferase family protein			Acetyltransferases, including N-acetylases of ribosomal proteins	2.3.1.-	CDS	Putative acetyltransferase			0	lit-s	0	
type VI secretion system effector, Hcp1 family protein			type VI secretion system effector, Hcp1 family		CDS	hypothetical protein			base_tigr	base_one HP	base_one HP	
putative conserved protein			hypothetical protein		CDS	Hypothetical protein yrhA			base_one HP	0	base_one HP	
			Transposase and inactivated derivatives		CDS				base_one miss	base_both miss	base_one miss	
putative transposase			Transposase and inactivated derivatives, IS1 family		CDS	Mobile element protein			0	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	Hypothetical protein yrhB			lit-s	base_one HP	base_one HP	
gamma-glutamyltransferase	2.3.2.2	ggt	gamma-glutamyltransferase 1 (EC:2.3.2.2). Threonine peptidase. MEROPS family T03	2.3.2.2	CDS	Gamma-glutamyltranspeptidase	2.3.2.2		base_tigr	base_ec	base_ec	
glycerophosphoryl diester phosphodiesterase	3.1.4.46	ugpQ	Glycerophosphoryl diester phosphodiesterase	3.1.4.46	CDS	Glycerophosphoryl diester phosphodiesterase	3.1.4.46		base_ec	base_ec	base_lit-s	
conserved hypothetical protein			Protein of unknown function (DUF2756).		CDS	FIG00638953: hypothetical protein			base_one HP	base_one HP	lit-s	
sn-glycerol-3-phosphate import ATP-binding protein UgpC	3.6.3.20	ugpC	glycerol 3-phosphate ABC transporter ATP-binding protein	3.6.3.20	CDS	"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)"			base_ec	0	0	
binding--dependent transport system inner membrane component family protein			glycerol 3-phosphate ABC transporter membrane protein		CDS	"Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3)"			0	0	0	
binding--dependent transport system inner membrane component family protein			glycerol 3-phosphate ABC transporter membrane protein		CDS	"Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)"			0	0	0	
bacterial extracellular solute-binding family protein			glycerol 3-phosphate-binding protein		CDS	"Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)"			0	0	0	
high-affinity branched-chain amino acid transport ATP-binding protein LivF		livF	L-leucine ABC transporter ATP-binding protein/L-isoleucine ABC transporter ATP-binding protein/L-valine ABC transporter ATP-binding protein		CDS	Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)			gs-sh	gs-sh	gs-sh	
ABC transporter family protein			L-leucine ABC transporter ATP-binding protein/L-isoleucine ABC transporter ATP-binding protein/L-valine ABC transporter ATP-binding protein		CDS	Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)			0	0	gs-sh	
branched-chain amino acid transport system / permease component family protein			L-leucine ABC transporter membrane protein/L-isoleucine ABC transporter membrane protein/L-valine ABC transporter membrane protein		CDS	Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)			map	tf_idf	gs-sh	
high-affinity branched-chain amino acid transport system permease protein livH		livH	L-leucine ABC transporter membrane protein/L-isoleucine ABC transporter membrane protein/L-valine ABC transporter membrane protein		CDS	High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)			gs-sh	lit-s	gs-sh	
leucine-specific-binding protein		livK	L-leucine-binding protein		CDS	"High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1)"			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Acetyltransferase (GNAT) domain.		CDS	probable acetyltransferase YPO3809			base_one HP	base_one HP	0	
leu/Ile/Val/Thr-binding protein		livJ	L-leucine-binding protein/L-isoleucine-binding protein/L-valine-binding protein		CDS	"Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1)"			gs-sh	0	0	
alternative sigma factor RpoH		rpoH	RNA polymerase, sigma 32 subunit, RpoH		CDS	RNA polymerase sigma factor RpoH			gs-sh	gs-sh	map	
putative protein insertion permease FtsX			cell division protein FtsX		CDS	Cell division protein FtsX			base_tigr	pfam-sh	lit-s	
cell division ATP-binding protein FtsE		ftsE	cell division ATP-binding protein FtsE		CDS	"Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1)"			base_lit-s	gs-sh	gs-sh	
signal recognition particle-docking protein FtsY		ftsY	signal recognition particle-docking protein FtsY		CDS	Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)			base_lit-s	gs-sh	gs-sh	
RNA methyltransferase, RsmD family	2.1.1.-		16S rRNA m(2)G-966 methyltransferase	2.1.1.171,2.1.1.52	CDS	putative methylase YhhF( EC:2.1.1.- )			base_tigr	0	0	
conserved hypothetical protein			Predicted membrane protein		CDS	Putative inner membrane protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Protein of unknown function (DUF2500).		CDS	Putative receptor			base_one HP	base_one HP	0	
yhhN-like family protein			Predicted membrane protein		CDS	probable enzyme yhhN			gs-sh	gs-sh	gs-sh	
cadmium-translocating P-type ATPase	3.6.3.3	cadA	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	3.6.3.3, 3.6.3.5	CDS	"Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase"	3.6.3.3, 3.6.3.5, 3.6.3.4		base_ec-d	base_ec-d	base_ec-d	
sulfurtransferase TusA	2.8.1.-	tusA	Predicted redox protein, regulator of disulfide bond formation	2.8.1.-	CDS	tRNA 5-methylaminomethyl-2-thiouridine synthase TusA			gs-sh	gs-sh	gs-sh	
inner membrane protein yhhQ		yhhQ	conserved hypothetical integral membrane protein		CDS	Putative preQ0 transporter			gs-sh	0	0	
protein dcrB		dcrB	Domain of unknown function (DUF1795).		CDS	DcrB protein precursor			gs-sh	0	0	
conserved hypothetical protein			Arabinose efflux permease		CDS	"Transporter, putative"			base_one HP	base_one HP	0	
conserved hypothetical protein			Predicted permease		CDS	Putative PerM family permease			base_one HP	base_one HP	gs-sh	
4'-phosphopantetheinyl transferase superfamily protein			Phosphopantetheinyl transferase	2.7.8.-	CDS	4'-phosphopantetheinyl transferase	2.7.8.-		0	lit-s	0	
nickel ABC transporter, nickel/metallophore periplasmic binding protein		nikA	nickel ABC transporter, nickel/metallophore periplasmic binding protein		CDS	"Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)"			base_lit-s	tf_idf	tf_idf	
nickel ABC transporter, permease subunit NikB	3.6.3.24	nikB	nickel ABC transporter, permease subunit NikB		CDS	Nickel transport system permease protein NikB (TC 3.A.1.5.3)			base_lit-s	gs-sh	tf_idf	
nickel ABC transporter, permease subunit NikC	3.6.3.24	nikC	nickel ABC transporter, permease subunit NikC		CDS	Nickel transport system permease protein NikC (TC 3.A.1.5.3)			base_lit-s	gs-sh	tf_idf	
nickel import ATP-binding protein NikD		nikD	nickel import ATP-binding protein NikD	3.6.3.24	CDS	Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)			base_lit-s	tf_idf	tf_idf	
nickel import ATP-binding protein NikE	3.6.3.24	nikE	nickel import ATP-binding protein NikE	3.6.3.24	CDS	Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)			base_lit-s	tf_idf	tf_idf	
nickel-responsive transcriptional regulator NikR		nikR	transcriptional regulator, CopG family		CDS	Nickel responsive regulator NikR			base_tigr	pfam-sh	gs-sh	
RHS repeat-associated core domain protein			RHS repeat-associated core domain		CDS	core protein			lit-s	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
H repeat-associated protein yhhI		yhhI	Transposase		CDS	Mobile element protein			gs-sh	0	0	
inner membrane transport permease yhhJ		yhhJ	ABC-type multidrug transport system, permease component		CDS	Putative transporter			gs-sh	gs-sh	orth	
heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	ABC-type multidrug transport system, ATPase component		CDS	"ABC-type multidrug transport system, permease component"			gs-sh	0	0	
efflux transporter, RND family, MFP subunit			hemolysin A secretion protein HlyD ( 8.A.1.3.1 )		CDS	Putative membrane protein			0	0	0	
conserved hypothetical protein			Domain of unknown function (DUF4049).		CDS	FIG00637996: hypothetical protein			base_one HP	base_one HP	lit-s	
			Domain of unknown function (DUF4049).		CDS				base_one miss	base_both miss	base_one miss	
conserved hypothetical protein			Domain of unknown function (DUF4049).		CDS	FIG00638558: hypothetical protein			base_one HP	base_one HP	lit-s	
inner membrane protein yhiM		yhiM	Protein of unknown function (DUF2776).		CDS	FIG00638244: hypothetical protein			gs-sh	0	lit-s	
flavo, HI0933 family protein			flavoprotein, HI0933 family		CDS	NAD(FAD)-utilizing dehydrogenases			base_tigr	0	0	
low-affinity inorganic phosphate transporter 1		pitA	Phosphate/sulphate permeases		CDS	Low-affinity inorganic phosphate transporter			gs-sh	gs-sh	map	
universal stress B family protein			Universal stress protein B (UspB).		CDS	Universal stress protein B			tf_idf	lit-s	tf_idf	
universal stress protein A		uspA	Universal stress protein UspA and related nucleotide-binding proteins		CDS	Universal stress protein A			gs-sh	lit-s	orth	
dipeptide and tripeptide permease B		dtpB	amino acid/peptide transporter (Peptide:H+ symporter), bacterial		CDS	Di/tripeptide permease DtpB			gs-sh	0	0	
SAM-dependent methyltransferase family protein			Putative SAM-dependent methyltransferase.		CDS	hypothetical protein			lit-s	base_one HP	base_one HP	
oligopeptidase A	3.4.24.70	prlC	oligopeptidase A (EC:3.4.24.70). Metallo peptidase. MEROPS family M03A	3.4.24.70	CDS	Oligopeptidase A	3.4.24.70		base_ec	base_ec	base_ec	
conserved hypothetical protein			Protein involved in catabolism of external DNA		CDS	Protein involved in catabolism of external DNA			base_one HP	base_one HP	base_lit-s	
glutathione-disulfide reductase	1.8.1.7	gor	NADPH-glutathione reductase (EC 1.8.1.7)	1.8.1.7	CDS	Glutathione reductase	1.8.1.7		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638311: hypothetical protein			lit-s	base_one HP	base_one HP	
bacterial regulatory , arsR family protein			transcriptional regulator, ArsR family		CDS	Arsenical resistance operon repressor			gs-sh	gs-sh	orth	
arsenical pump membrane protein		arsB	arsenite efflux membrane protein ArsB (TC 3.A.4.1.1; TC 2.A.45.1.1)		CDS	Arsenic efflux pump protein			gs-sh	gs-sh	map	
arsenate reductase	1.20.4.1	arsC	arsenate reductase (glutaredoxin)	1.20.4.1	CDS	Arsenate reductase	1.20.4.1		base_tigr	base_ec	base_ec	
putative predicted protein			hypothetical protein		CDS	FIG00638514: hypothetical protein			base_one HP	lit-s	base_one HP	
transposase DDE domain protein			Transposase and inactivated derivatives, IS5 family		CDS	Mobile element protein			0	0	0	
						FIG00641106: hypothetical protein			base_both miss	base_one miss	base_one miss	
outer membrane protein slp		slp	outer membrane lipoprotein, Slp family		CDS	Starvation lipoprotein Slp			gs-sh	0	0	
bacterial regulatory s, luxR family protein			Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	"Transcriptional regulator, ArsR family"			gs-sh	gs-sh	gs-sh	
mgtC family protein			Uncharacterized membrane protein		CDS	"Mg(2+) transport ATPase protein C / Putative membrane transporter ATPase,YhiD"			gs-sh	0	0	
protein hdeB		hdeB	HdeA/HdeB family.		CDS	Chaperone HdeB			gs-sh	0	0	
chaperone-like protein hdeA		hdeA	HdeA/HdeB family.		CDS	Chaperone HdeA			gs-sh	map	pfam-sh	
protein hdeD		hdeD	Uncharacterized conserved protein		CDS	"Membrane transporter HdeD, H-NS repressed"			gs-sh	0	0	
transcriptional regulator gadE		gadE	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	Transcriptional activator GadE			gs-sh	tf_idf	map	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
multidrug resistance protein mdtE		mdtE	RND family efflux transporter, MFP subunit		CDS	Multidrug resistance protein MdtE			gs-sh	lit-s	orth	
multidrug resistance protein MdtF		mdtF	The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family		CDS	"RND efflux system, inner membrane transporter CmeB"			gs-sh	0	0	
HTH-type transcriptional regulator gadW		gadW	transcriptional regulator, AraC family		CDS	HTH-type transcriptional regulator gadW			gs-sh	base_lit-s	gs-sh	
HTH-type transcriptional regulator gadX		gadX	transcriptional regulator, AraC family		CDS	HTH-type transcriptional regulator gadX			gs-sh	base_lit-s	gs-sh	
glutamate decarboxylase	4.1.1.15		glutamate decarboxylase (EC 4.1.1.15)	4.1.1.15	CDS	Glutamate decarboxylase	4.1.1.15		base_tigr	base_ec	base_ec	
cytochrome c family protein			Cytochrome c peroxidase	1.11.1.5	CDS	Cytochrome c551 peroxidase	1.11.1.5		tf_idf	tf_idf	base_ec	
trehalase family protein			Neutral trehalase	3.2.1.28	CDS	Cytoplasmic trehalase	3.2.1.28		map	tf_idf	base_ec	
putative HTH-type transcriptional regulator yhjB			Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	Putative regulator			gs-sh	gs-sh	map	
conserved hypothetical protein			transcriptional regulator, LysR family		CDS	LysR family transcriptional regulator YhjC			base_one HP	base_one HP	gs-sh	
inner membrane protein YhjD		yhjD	ribonuclease, putative		CDS	Inner membrane protein YhjD			gs-sh	lit-s	map	
inner membrane metabolite transport protein yhjE		yhjE	metabolite-proton symporter		CDS	Inner membrane metabolite transport protein YhjE			gs-sh	lit-s	orth	
asmA family protein			Uncharacterized protein involved in outer membrane biogenesis		CDS	Uncharacterized protein YhjG			gs-sh	orth	map	
cyclic di-GMP phosphodiesterase YhjH	3.1.4.52	yhjH	FOG: EAL domain		CDS	GGDEF/EAL domain protein YhjH			gs-sh	0	0	
pfkB carbohydrate kinase family protein			2-keto-3-deoxygluconate kinase (EC 2.7.1.45)	2.7.1.45	CDS	2-dehydro-3-deoxygluconate kinase	2.7.1.45		gs-sh	map	base_ec	
protein yhjJ		yhjJ	Predicted Zn-dependent peptidases		CDS	"Protein YhjJ, putative peptidase"			gs-sh	0	0	
aerobic C4-dicarboxylate transport protein		dctA	Na+/H+-dicarboxylate symporters		CDS	"Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate"			gs-sh	0	0	
putative predicted protein						hypothetical protein			base_one miss	base_one HP	base_one HP	
protein YhjK		yhjK	diguanylate cyclase/phosphodiesterase		CDS	Protein yhjK			gs-sh	lit-s	gs-sh	
cellulose synthase operon protein C		bcsC	Flp pilus assembly protein TadD, contains TPR repeats		CDS	Cellulose synthase operon protein C			gs-sh	lit-s	map	
endoglucanase	3.2.1.4	bcsZ	Cellulase family 8 (EC 3.2.1.4)	3.2.1.4	CDS	Endoglucanase precursor	3.2.1.4		base_ec	base_ec	base_ec	
cyclic di-GMP-binding protein		bcsB	Bacterial cellulose synthase subunit.		CDS	Cyclic di-GMP binding protein precursor			gs-sh	0	0	
cellulose synthase catalytic subunit [UDP-forming]	2.4.1.12	bcsA	cellulose synthase catalytic subunit (UDP-forming)	2.4.1.12	CDS	Cellulose synthase catalytic subunit [UDP-forming]	2.4.1.12		base_ec	base_ec	base_ec	
cellulose synthase operon protein YhjQ		yhjQ	cell division protein YhjQ		CDS	"Cellulose synthase, putative"			base_tigr	orth	orth	
conserved hypothetical protein			Protein of unknown function (DUF2629).		CDS	FIG004405: Putative cytoplasmic protein			base_one HP	base_one HP	0	
cellulose biosynthesis protein BcsE		bcsE	cellulose biosynthesis protein BcsE		CDS	FIG005274: hypothetical protein			base_lit-s	0	0	
celllulose biosynthesis operon protein BcsF/YhjT		bcsF	celllulose biosynthesis operon protein BcsF/YhjT		CDS	FIG005119: putative inner membrane protein			base_lit-s	0	0	
conserved hypothetical protein			cellulose synthase operon protein YhjU		CDS	FIG002337: predicted inner membrane protein			base_one HP	base_one HP	0	
toxin Ldr, type I toxin-antitoxin system family protein			Toxin Ldr, type I toxin-antitoxin system.		CDS	corresponds to STY4175 from Accession AL513382: Salmonella typhi CT18			lit-s	0	0	
inner membrane transport protein YhjV		yhjV	Amino acid permeases		CDS	Serine transporter			gs-sh	orth	map	
oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein			oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain		CDS	Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2)			base_tigr	map	gs-sh	
oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein			oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain		CDS	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)			base_tigr	map	gs-sh	
dipeptide transport system permease protein dppC		dppC	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)			gs-sh	lit-s	gs-sh	
binding--dependent transport system inner membrane component family protein			ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)			0	0	gs-sh	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
bacterial extracellular solute-binding s, 5 Middle family protein			ABC-type dipeptide transport system, periplasmic component		CDS	"Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)"			0	0	0	
conserved hypothetical protein						FIG00638870: hypothetical protein			base_one HP	base_one HP	base_one miss	
phosphoethanolamine transferase eptB	2.7.-.-	eptB	Predicted membrane-associated, metal-dependent hydrolase		CDS	Phosphoethanolamine transferase specific for the outer Kdo residue of lipopolysaccharide			gs-sh	0	0	
inner membrane protein yhjX		yhjX	Oxalate/Formate Antiporter		CDS	Putative resistance protein			gs-sh	orth	orth	
outer membrane autotransporter barrel domain protein			outer membrane autotransporter barrel domain		CDS	Putative lipase			base_tigr	0	0	
DNA-3-methyladenine glycosylase 1	3.2.2.20	tag	DNA-3-methyladenine glycosylase I (EC 3.2.2.20)	3.2.2.20	CDS	DNA-3-methyladenine glycosylase	3.2.2.20		base_ec	base_ec	base_ec	
molybdopterin guanine dinucleotide-containing S/N-oxide reductases family protein			molybdopterin guanine dinucleotide-containing S/N-oxide reductases	1.-	CDS	Biotin sulfoxide reductase / Free methionine-(S)-sulfoxide reductase	1.-.-.-		base_tigr	0	0	
acetyltransferase family protein			N-acetylglutamate synthase and related acetyltransferases	2.3.1.-	CDS	Acetyltransferase	2.3.1.-		0	lit-s	0	
inner membrane lipoprotein yiaD		yiaD	Outer membrane protein and related peptidoglycan-associated (lipo)proteins		CDS	Outer membrane protein A precursor			gs-sh	0	0	
glyoxylate/hydroxypyruvate reductase B	1.1.1.215	ghrB	Lactate dehydrogenase and related dehydrogenases	1.1.1.215	CDS	"2-ketoaldonate reductase, broad specificity"	1.1.1.215, 1.1.1.-		base_ec	0	0	
conserved hypothetical protein			Protein of unknown function (DUF3053).		CDS	probable exported protein YPO4070			base_one HP	base_one HP	0	
helix-turn-helix family protein			Predicted transcriptional regulator		CDS	FIG00638451: hypothetical protein			0	0	0	
cold shock protein CspA		cspA	cold-shock DNA-binding protein family		CDS	Cold shock protein CspA			gs-sh	lit-s	orth	
									base_both miss	base_both miss	base_both miss	
protein HokA		hokA	Hok/gef family.		CDS	putative membrane permeability altering protein			gs-sh	orth	map	
helix-turn-helix domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
glycyl-tRNA synthetase beta subunit	6.1.1.14	glyS	glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	6.1.1.14	CDS	Glycyl-tRNA synthetase beta chain	6.1.1.14		base_ec	base_ec	base_ec	
glycyl-tRNA synthetase alpha subunit	6.1.1.14	glyQ	glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	6.1.1.14	CDS	Glycyl-tRNA synthetase alpha chain	6.1.1.14		base_ec	base_ec	base_ec	
ysaB-like lipofamily protein			YsaB-like lipoprotein.		CDS	Uncharacterized lipoprotein YsaB precursor			gs-sh	map	pfam-sh	
inner membrane protein YiaH		yiaH	Uncharacterized protein conserved in bacteria		CDS	Inner membrane protein YiaH			gs-sh	lit-s	0	
inner membrane protein yiaA		yiaA	Predicted membrane protein		CDS	Inner membrane protein YiaA			gs-sh	lit-s	map	
inner membrane protein yiaB		yiaB	Predicted membrane protein		CDS	Inner membrane protein YiaB			gs-sh	lit-s	map	
xylulokinase	2.7.1.17	xylB	xylulokinase (EC 2.7.1.17)	2.7.1.17	CDS	Xylulose kinase	2.7.1.17		base_tigr	base_ec	base_ec	
xylose isomerase	5.3.1.5	xylA	D-xylose isomerase (EC 5.3.1.5)	5.3.1.5	CDS	Xylose isomerase	5.3.1.5		base_tigr	base_ec	base_ec	
D-xylose ABC transporter, D-xylose-binding protein		xylF	xylose-binding protein		CDS	"Xylose ABC transporter, periplasmic xylose-binding protein XylF"			base_tigr	0	0	
heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	xylose ABC transporter ATP-binding protein	3.6.3.17	CDS	D-xylose transport ATP-binding protein XylG			base_ec-d	0	0	
branched-chain amino acid transport system / permease component family protein			xylose ABC transporter membrane protein		CDS	"Xylose ABC transporter, permease protein XylH"			0	0	0	
bacterial regulatory helix-turn-helix s, AraC family protein			transcriptional regulator, AraC family		CDS	Xylose activator XylR (AraC family)			pfam-sh	gs-sh	gs-sh	
mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein			Uncharacterized FlgJ-related protein		CDS	BAX protein			0	0	orth	
alpha-amylase	3.2.1.1	malS	Glycosidases	3.2.1.1	CDS	Periplasmic alpha-amylase	3.2.1.1		base_ec	base_ec	base_ec	
aminotransferase class I and II family protein			valine-pyruvate aminotransferase apoenzyme (EC 2.6.1.66)	2.6.1.66	CDS	Valine--pyruvate aminotransferase	2.6.1.66		0	0	base_ec	
electron transport protein hydN		hydN	Fe-S-cluster-containing hydrogenase components 2		CDS	Putative electron transport protein YsaA			gs-sh	0	0	
HTH-type transcriptional regulator yiaJ		yiaJ	transcriptional regulator, IclR family		CDS	"Transcriptional regulator, IclR family"			gs-sh	gs-sh	lit-s	
2,3-diketo-L-gulonate reductase	1.1.1.130	dlgD	2,3-diketo-L-gulonate reductase (EC 1.1.1.130)	1.1.1.130	CDS	3-dehydro-L-gulonate 2-dehydrogenase	1.1.1.130		base_ec	base_ec	base_ec	
conserved hypothetical protein			uncharacterized protein, YhcH/YjgK/YiaL family		CDS	Putative sugar isomerase involved in processing of exogenous sialic acid			base_one HP	base_one HP	0	
2,3-diketo-L-gulonate TRAP transporter small permease protein yiaM		yiaM	TRAP-type C4-dicarboxylate transport system, small permease component		CDS	"2,3-diketo-L-gulonate TRAP transporter small permease protein yiaM"			gs-sh	lit-s	gs-sh	
TRAP transporter, DctM subunit			TRAP transporter, DctM subunit		CDS	"2,3-diketo-L-gulonate TRAP transporter large permease protein yiaN"			base_lit-s	gs-sh	gs-sh	
2,3-diketo-L-gulonate-binding periplasmic protein yiaO		yiaO	tripartite ATP-independent periplasmic transporter solute receptor, DctP family		CDS	"2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor"			gs-sh	gs-sh	gs-sh	
L-xylulose/3-keto-L-gulonate kinase	2.7.1.53	lyx	3-keto-L-gulonate kinase/L-xylulose kinase	2.7.1.53,2.7.1.-, 2.7.1.53	CDS	L-xylulose/3-keto-L-gulonate kinase	2.7.1.-		gs-sh	base_lit-s	map	
3-keto-L-gulonate-6-phosphate decarboxylase sgbH	4.1.1.85	sgbH	3-keto-L-gulonate 6-phosphate decarboxylase (EC 4.1.1.85)	4.1.1.85	CDS	3-keto-L-gulonate 6-phosphate decarboxylase homolog			base_ec	orth	lit-s	
xylose isomerase-like TIM barrel family protein			L-xylulose 5-phosphate 3-epimerase	5.-,5.1.3.22	CDS	L-xylulose 5-phosphate 3-epimerase homolog	5.1.3.-		0	0	lit-s	
L-ribulose-5-phosphate 4-epimerase	5.1.3.4	araD	L-ribulose 5-phosphate 4-epimerase (EC 5.1.3.4)	5.1.3.4	CDS	L-ribulose-5-phosphate 4-epimerase	5.1.3.4		base_tigr	base_lit-s	base_ec	
mltA-interacting MipA family protein			Outer membrane protein V		CDS	Putative outer membrane protein yiaT precursor			gs-sh	gs-sh	gs-sh	
inner membrane protein yiaV		yiaV	Multidrug resistance efflux pump		CDS	Multidrug resistance protein A			gs-sh	0	0	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	LysR family transcriptional regulator YiaU			gs-sh	gs-sh	gs-sh	
inner membrane protein yiaW		yiaW	Protein of unknown function (DUF3302).		CDS	GTPase	3.6.1.-		gs-sh	orth	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638635: hypothetical protein			lit-s	base_one HP	base_one HP	
aldehyde dehydrogenase B	1.2.1.-	aldB	NAD-dependent aldehyde dehydrogenases	1.2.1.-	CDS	Aldehyde dehydrogenase B	1.2.1.22		gs-sh	lit-s	map	
iron-containing alcohol dehydrogenase family protein			Alcohol dehydrogenase, class IV	1.1.1.1	CDS	Alcohol dehydrogenase	1.1.1.1		tf_idf	tf_idf	base_ec	
selenocysteine-specific translation elongation factor		selB	selenocysteine-specific translation elongation factor SelB		CDS	Selenocysteine-specific translation elongation factor			gs-sh	lit-s	orth	
L-seryl-tRNA selenium transferase	2.9.1.1	selA	L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1)	2.9.1.1	CDS	L-seryl-tRNA(Sec) selenium transferase	2.9.1.1		base_tigr	base_ec	base_ec	
glutathione S-transferase, C-terminal domain protein			Glutathione S-transferase		CDS	Uncharacterized GST-like protein yibF			lit-s	gs-sh	gs-sh	
RHS repeat-associated core domain protein			RHS repeat-associated core domain		CDS	core protein			lit-s	0	0	
protein yibA		yibA	FOG: HEAT repeat		CDS	"orf, hypothetical protein"			gs-sh	0	0	
RHS repeat-associated core domain protein			RHS repeat-associated core domain		CDS	core protein			base_tigr	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
inner membrane protein yibH		yibH	Multidrug resistance efflux pump		CDS	Multidrug resistance protein A			gs-sh	0	0	
inner membrane protein yiaW		yiaW	Protein of unknown function (DUF3302).		CDS	GTPase	3.6.1.-		gs-sh	0	0	
PTS system mannitol-specific EIICBA component	2.7.1.-	mtlA	PTS system D-mannitol-specific IIA component, Fru family (TC 4.A.2.1.2)/PTS system D-mannitol-specific IIB component, Fru family (TC 4.A.2.1.2)/PTS system D-mannitol-specific IIC component, Fru family (TC 4.A.2.1.2)		CDS	"PTS system, mannitol-specific IIC component / PTS system, mannitol-specific IIB component / PTS system, mannitol-specific IIA component"	2.7.1.69, 2.7.1.69, 2.7.1.69		gs-sh	tf_idf	map	
mannitol-1-phosphate 5-dehydrogenase	1.1.1.17	mtlD	D-mannitol 1-phosphate 5-dehydrogenase (EC 1.1.1.17)	1.1.1.17	CDS	Mannitol-1-phosphate 5-dehydrogenase	1.1.1.17		base_ec	base_ec	base_ec	
mannitol operon repressor		mtlR	mannitol repressor, MtlR		CDS	Mannitol operon repressor			gs-sh	lit-s	map	
conserved hypothetical protein			hypothetical protein		CDS	Putative cytoplasmic protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			NAD/FAD-utilizing enzyme apparently involved in cell division		CDS	FIG01045660: hypothetical protein			base_one HP	base_one HP	0	
L-lactate permease		lldP	L-lactate transport		CDS	L-lactate permease			gs-sh	base_lit-s	orth	
bacterial regulatory s, gntR family protein			transcriptional regulator, GntR family		CDS	"Lactate-responsive regulator LldR in Enterobacteria, GntR family"			gs-sh	gs-sh	pfam-sh	
L-lactate dehydrogenase [cytochrome]	1.1.2.3	lldD	L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases	1.1.2.3	CDS	L-lactate dehydrogenase	1.1.2.3		base_ec	base_ec	base_ec	
tRNA (cytidine(34)-2'-O)-methyltransferase	2.1.1.207	trmL	rRNA methylase, putative, group 2	2.1.1.207	CDS	tRNA (cytidine(34)-2'-O)-methyltransferase ## TrmL	2.1.1.207		base_tigr	base_ec	base_ec	
serine O-acetyltransferase	2.3.1.30	cysE	serine O-acetyltransferase (EC 2.3.1.30)	2.3.1.30	CDS	Serine acetyltransferase	2.3.1.30		base_tigr	base_ec	base_ec	
NAD-dependent glycerol-3-phosphate dehydrogenase family protein			glycerol 3-phosphate dehydrogenase (NAD(P)+) (EC 1.1.1.94)	1.1.1.94	CDS	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	1.1.1.94		0	0	base_ec	
protein-export chaperone SecB		secB	protein translocase subunit secB		CDS	"Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state)"			base_tigr	pfam-sh	map	
glutaredoxin 3		grxC	Glutaredoxin, GrxC family		CDS	Glutaredoxin 3 (Grx3)			base_tigr	0	0	
rhodanese-like domain protein			Rhodanese-related sulfurtransferase		CDS	FIG136845: Rhodanese-related sulfurtransferase			orth	map	lit-s	
2,3-bisphosphoglycerate-independent phosphoglycerate mutase	5.4.2.1	gpmI	phosphoglycerate mutase (EC 5.4.2.1)	5.4.2.1	CDS	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase"	5.4.2.1		base_tigr	base_ec	base_ec	
murein hydrolase activator EnvC		envC	Membrane-bound metallopeptidase		CDS	Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP			gs-sh	0	0	
glycosyl transferase 2 family protein			Glycosyltransferases involved in cell wall biogenesis		CDS	"Beta-1,3-galactosyltransferase / Beta-1,4-galactosyltransferase"			0	0	0	
divergent polysaccharide deacetylase family protein			Uncharacterized protein conserved in bacteria		CDS	"Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase"			0	0	0	
L-threonine 3-dehydrogenase	1.1.1.103	tdh	L-threonine 3-dehydrogenase (EC 1.1.1.103)	1.1.1.103	CDS	L-threonine 3-dehydrogenase	1.1.1.103		base_ec	base_lit-s	base_ec	
2-amino-3-ketobutyrate coenzyme A ligase	2.3.1.29	kbl	2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	2.3.1.29	CDS	2-amino-3-ketobutyrate coenzyme A ligase	2.3.1.29		base_ec	base_lit-s	base_ec	
conserved hypothetical protein			conserved hypothetical protein HtrL		CDS	Involved in lipopolysaccharide biosynthesis			base_one HP	base_one HP	0	
ADP-glyceromanno-heptose 6-epimerase	5.1.3.20	rfaD	ADP-glyceromanno-heptose 6-epimerase precursor (EC 5.1.3.20)	5.1.3.20	CDS	ADP-L-glycero-D-manno-heptose-6-epimerase	5.1.3.20		base_tigr	base_ec	base_ec	
lipopolysaccharide heptosyltransferase II	2.4.-.-	rfaF	lipopolysaccharide heptosyltransferase II	2.4.-	CDS	ADP-heptose--lipooligosaccharide heptosyltransferase II	2.4.1.-		base_lit-s	gs-sh	tf_idf	
lipopolysaccharide heptosyltransferase I	2.4.-.-	rfaC	lipopolysaccharide heptosyltransferase I	2.4.-	CDS	Lipopolysaccharide heptosyltransferase I	2.4.1.-		base_lit-s	lit-s	lit-s	
O-antigen ligase		rfaL	Lipid A core - O-antigen ligase and related enzymes	6.-	CDS	O-antigen ligase			gs-sh	base_lit-s	map	
glycosyltransferase 9 family protein			ADP-heptose:LPS heptosyltransferase	2.4.-	CDS	"Lipopolysaccharide 1,2-N-acetylglucosaminetransferase"	2.4.1.56		0	0	0	
conserved hypothetical protein			hypothetical protein	2.-	CDS	Lipopolysaccharide core biosynthesis protein RfaZ			lit-s	base_one HP	base_one HP	
lipopolysaccharide core heptose(II) kinase rfaY	2.7.1.-	rfaY	Predicted unusual protein kinase	2.7.1.-	CDS	Lipopolysaccharide core biosynthesis protein RfaY			gs-sh	orth	map	
lipopolysaccharide 1,2-glucosyltransferase	2.4.1.58	rfaJ	Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases	2.4.1.-	CDS	"lipopolysaccharide 1,2-glucosyltransferase( EC:2.4.1.58 )"			gs-sh	0	0	
glycosyl transferase 8 C-terminal family protein			Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases	2.4.1.-	CDS	"UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO"	2.4.1.-		0	0	0	
lipopolysaccharide 1,6-galactosyltransferase	2.4.1.-	rfaB	Glycosyltransferase	2.4.1.-	CDS	"Lipopolysaccharide 1,6-galactosyltransferase"	2.4.1.-		gs-sh	lit-s	map	
lipopolysaccharide core biosynthesis protein rfaS		rfaS	hypothetical protein	2.4.1.-	CDS	Lipopolysaccharide core biosynthesis protein RfaS			base_one HP	lit-s	base_one HP	
lipopolysaccharide core heptose(I) kinase rfaP	2.7.1.-	rfaP	Lipopolysaccharide kinase (Kdo/WaaP) family.	2.7.1.-	CDS	"Lipopolysaccharide core biosynthesis protein WaaP, heptosyl-I-kinase"	2.7.-.-		gs-sh	tf_idf	map	
lipopolysaccharide core biosynthesis protein rfaG	2.4.-.-	rfaG	Glycosyltransferase	2.4.1.-	CDS	"UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG"	2.4.1.-		gs-sh	0	0	
putative lipopolysaccharide heptosyltransferase III			lipopolysaccharide heptosyltransferase III, putative	2.4.-	CDS	Lipopolysaccharide heptosyltransferase III	2.4.1.-		base_tigr	lit-s	lit-s	
glycosyl transferases group 1 family protein			3-deoxy-D-manno-octulosonic-acid transferase	2.4.99.13, 2.4.99.12, 2.4.99.15, 2.4.99.14	CDS	3-deoxy-D-manno-octulosonic-acid transferase	2.-.-.-		0	0	base_lit-s	
pantetheine-phosphate adenylyltransferase	2.7.7.3	coaD	Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	2.7.7.3	CDS	Phosphopantetheine adenylyltransferase	2.7.7.3		base_ec	base_ec	base_ec	
formamidopyrimidine-DNA glycosylase	3.2.2.23	mutM	formamidopyrimidine-DNA glycosylase (fpg)	4.2.99.18, 3.2.2.23	CDS	Formamidopyrimidine-DNA glycosylase	3.2.2.23		base_tigr	base_ec	base_ec-d	
ribosomal protein L33		rpmG	LSU ribosomal protein L33P		CDS	"LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent"			base_tigr	0	0	
ribosomal protein L28		rpmB	LSU ribosomal protein L28P		CDS	LSU ribosomal protein L28p			base_tigr	map	lit-s	
DNA repair RadC family protein			DNA replication and repair protein RadC		CDS	DNA repair protein RadC			base_tigr	lit-s	pfam-sh	
phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase	4.1.1.36	coaBC	Phosphopantothenate-cysteine ligase/Phosphopantothenoylcysteine decarboxylase	4.1.1.36, 6.3.2.5,6.3.2.5, 4.1.1.36	CDS	Phosphopantothenoylcysteine decarboxylase / Phosphopantothenoylcysteine synthetase	4.1.1.36, 6.3.2.5		base_tigr	base_ec-d	base_ec-d	
deoxyuridine 5'-triphosphate nucleotidohydrolase	3.6.1.23	dut	deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)	3.6.1.23	CDS	Deoxyuridine 5'-triphosphate nucleotidohydrolase	3.6.1.23		base_ec	base_ec	base_ec	
HTH-type protein slmA		slmA	transcriptional regulator, TetR family/cell division inhibitor SlmA		CDS	"Transcriptional regulator SlmA, TetR family"			gs-sh	gs-sh	pfam-sh	
orotate phosphoribosyltransferase	2.4.2.10	pyrE	orotate phosphoribosyltransferase (EC 2.4.2.10)	2.4.2.10	CDS	Orotate phosphoribosyltransferase	2.4.2.10		base_ec	base_ec	base_ec	
ribonuclease PH	2.7.7.56	rph	RNAse PH (EC 2.7.7.56)	2.7.7.56	CDS	Ribonuclease PH	2.7.7.56		base_tigr	base_ec	base_ec	
conserved hypothetical protein			TIGR00255 family protein		CDS	Protein YicC			base_one HP	base_one HP	0	
putative dNA-damage-inducible protein D			hypothetical protein		CDS	DNA-damage-inducible protein D			base_one HP	lit-s	base_one HP	
DNA ligase B	6.5.1.2	ligB	NAD-dependent DNA ligase (contains BRCT domain type II)	6.5.1.2	CDS	"DNA ligase, LigB"	6.5.1.2		base_ec	base_ec	base_ec	
conserved hypothetical protein			Predicted membrane protein		CDS	Putative inner membrane protein			base_one HP	base_one HP	0	
guanylate kinase	2.7.4.8	gmk	guanylate kinase (EC 2.7.4.8)	2.7.4.8	CDS	Guanylate kinase	2.7.4.8		base_tigr	base_ec	base_ec	
DNA-directed RNA polymerase, omega subunit	2.7.7.6	rpoZ	DNA-directed RNA polymerase subunit omega (EC 2.7.7.6)	2.7.7.6	CDS	DNA-directed RNA polymerase omega subunit	2.7.7.6		base_tigr	base_ec	base_ec	
bifunctional (p)ppGpp synthase/hydrolase SpoT	3.1.7.2	spoT	(p)ppGpp synthetase, RelA/SpoT family	3.1.7.2	CDS	"GTP pyrophosphokinase, (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase"	2.7.6.5, 3.1.7.2		base_ec	base_ec-d	base_ec-d	
tRNA guanosine-2'-O-methyltransferase	2.1.1.34	trmH	rRNA methylases	2.1.1.34	CDS	tRNA (guanosine(18)-2'-O)-methyltransferase	2.1.1.34		base_ec	base_ec	base_ec	
ATP-dependent DNA helicase RecG	3.6.4.12	recG	ATP-dependent DNA helicase RecG	3.6.4.12,3.6.1.-	CDS	ATP-dependent DNA helicase RecG	3.6.1.-		base_lit-s	base_lit-s	base_lit-s	
sodium/glutamate symporter		gltS	sodium--glutamate symport carrier (gltS)		CDS	Sodium/glutamate symport protein			base_tigr	tf_idf	map	
uracil-xanthine permease family protein			uracil-xanthine permease		CDS	Xanthine permease			lit-s	0	0	
conserved hypothetical protein			AsmA family.		CDS	Putative exported protein			base_one HP	base_one HP	0	
alpha-xylosidase	3.2.1.-	yicI	Alpha-glucosidases, family 31 of glycosyl hydrolases		CDS	Alpha-xylosidase	3.2.1.-		gs-sh	lit-s	orth	
inner membrane symporter yicJ		yicJ	sugar (Glycoside-Pentoside-Hexuronide) transporter		CDS	Xyloside transporter XynT			gs-sh	gs-sh	map	
sugar efflux transporter C		setC	sugar efflux transporter		CDS	Sugar efflux transporter B			gs-sh	tf_idf	tf_idf	
conserved hypothetical protein			Carboxylate/Amino Acid/Amine Transporter		CDS	FIG00638098: hypothetical protein			base_one HP	base_one HP	0	
lipoprotein 28		nlpA	lipoprotein, YaeC family		CDS	Methionine ABC transporter substrate-binding protein			gs-sh	0	0	
conserved hypothetical protein			hypothetical protein		CDS	probable secreted protein STY4010			lit-s	base_one HP	base_one HP	
purine ribonucleoside efflux pump nepI		nepI	Arabinose efflux permease		CDS	Putative transport protein			gs-sh	0	0	
conserved hypothetical protein			Protein of unknown function (DUF1198).		CDS	probable membrane protein YPO2654			base_one HP	base_one HP	0	
putative permease yicO			Permeases		CDS	Xanthine/uracil/thiamine/ascorbate permease family protein			gs-sh	0	0	
adenine deaminase	3.5.4.2	ade	Adenine deaminase (EC 3.5.4.2)	3.5.4.2	CDS	Adenine deaminase	3.5.4.2		base_tigr	base_ec	base_ec	
hexose phosphate transport protein		uhpT	phosphoglycerate transporter family protein		CDS	Hexose phosphate transport protein UhpT			gs-sh	tf_idf	map	
regulatory protein uhpC		uhpC	phosphoglycerate transporter family protein		CDS	Hexose phosphate uptake regulatory protein UhpC			gs-sh	gs-sh	gs-sh	
histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein			Signal transduction histidine kinase, glucose-6-phosphate specific		CDS	"Sensor histidine protein kinase UhpB, glucose-6-phosphate specific"	2.7.13.3		0	0	0	
transcriptional regulatory protein uhpA		uhpA	two component transcriptional regulator, LuxR family		CDS	Transcriptional regulatory protein UhpA			gs-sh	lit-s	orth	
acetolactate synthase isozyme 1 small subunit	2.2.1.6	ilvN	acetolactate synthase, small subunit (EC 2.2.1.6)	2.2.1.6	CDS	Acetolactate synthase small subunit	2.2.1.6		base_ec	base_ec	base_ec	
acetolactate synthase, large subunit, biosynthetic type	2.2.1.6	ilvB	acetolactate synthase, large subunit (EC 2.2.1.6)	2.2.1.6	CDS	Acetolactate synthase large subunit	2.2.1.6		base_tigr	base_ec	base_ec	
multidrug resistance protein D		emrD	Multidrug resistance protein		CDS	Multidrug resistance protein D			gs-sh	lit-s	tf_idf	
putative dNA-binding transcriptional regulator			hypothetical protein		CDS	Putative transcriptional regulator			base_one HP	0	base_one HP	
inner membrane protein yidG		yidG	Domain of unknown function (DUF202).		CDS	Putative inner membrane protein			gs-sh	orth	0	
conserved hypothetical protein			Predicted membrane protein		CDS	Putative inner membrane protein			base_one HP	base_one HP	orth	
inner membrane protein yidI		yidI	hypothetical protein		CDS	FIG00638952: hypothetical protein			base_one HP	0	base_one HP	
sulfatase family protein			Arylsulfatase A and related enzymes		CDS	Choline-sulfatase	3.1.6.6		0	0	0	
conserved hypothetical protein			transporter, SSS family		CDS	Sodium-Choline Symporter			base_one HP	base_one HP	0	
family 4 glycosyl hydrolase C-terminal domain protein			Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases		CDS	Maltose-6'-phosphate glucosidase	3.2.1.122		0	0	0	
bacterial regulatory helix-turn-helix s, AraC family protein			transcriptional regulator, AraC family		CDS	Hypothetical transcriptional regulator yidL			pfam-sh	gs-sh	gs-sh	
6-phospho-alpha-glucosidase	3.2.1.122	aglB	Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases	3.2.1.122	CDS	Maltose-6'-phosphate glucosidase	3.2.1.122		base_ec	base_ec	base_ec	
PTS system, glucose-like IIB component domain protein	2.7.1.69		PTS system, glucose-like IIB component		CDS	"PTS system, maltose and glucose-specific IIC component / PTS system, maltose and glucose-specific IIB component"	2.7.1.69, 2.7.1.69		base_tigr	base_ec-d	0	
PTS system, alpha-glucoside-specific IIBC component domain protein	2.7.1.69		PTS system glucose/alpha-glucoside-specific IIB component, Glc family (TC 4.A.1.1.10)/PTS system glucose/alpha-glucoside-specific IIC component, Glc family (TC 4.A.1.1.10)		CDS	"PTS system, maltose and glucose-specific IIC component / PTS system, maltose and glucose-specific IIB component"	2.7.1.69, 2.7.1.69		0	base_ec-d	0	
aspT/YidE/YbjL antiporter duplication domain protein			Predicted permease		CDS	Mediator of hyperadherence YidE			base_tigr	0	0	
conserved hypothetical protein			transcriptional regulator, GntR family		CDS	HTH-type transcriptional regulator YidP			base_one HP	base_one HP	0	
small heat shock protein ibpB		ibpB	Molecular chaperone (small heat shock protein)		CDS	16 kDa heat shock protein B			gs-sh	0	0	
small heat shock protein ibpA		ibpA	Molecular chaperone (small heat shock protein)		CDS	16 kDa heat shock protein A			gs-sh	orth	tf_idf	
conserved hypothetical protein			Predicted periplasmic lipoprotein		CDS	Outer membrane lipoprotein YidQ			base_one HP	base_one HP	0	
conserved hypothetical protein			Periplasmic component of the Tol biopolymer transport system		CDS	Uncharacterized protein YidR			base_one HP	base_one HP	0	
D-galactonate transporter		dgoT	phosphoglycerate transporter family protein/D-galactonate transporter		CDS	D-galactonate transporter			gs-sh	base_lit-s	map	
FAD binding domain protein			Dehydrogenases (flavoproteins)		CDS	Uncharacterized protein YidS			0	0	0	
D-galactonate dehydratase	4.2.1.6	dgoD	L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily	4.2.1.6	CDS	Galactonate dehydratase	4.2.1.6		base_ec	base_ec	base_ec	
2-dehydro-3-deoxy-6-phosphogalactonate aldolase	4.1.2.21	dgoA	2-keto-3-deoxy-phosphogalactonate aldolase (EC 4.1.2.21)	4.1.2.21	CDS	2-dehydro-3-deoxyphosphogalactonate aldolase	4.1.2.21		base_ec	base_ec	base_ec	
2-oxo-3-deoxygalactonate kinase		dgoK	2-keto-3-deoxy-galactonokinase	2.7.1.58	CDS	2-dehydro-3-deoxygalactonokinase	2.7.1.58		gs-sh	gs-sh	base_ec	
bacterial regulatory s, gntR family protein			transcriptional regulator, GntR family		CDS	D-Galactonate repressor DgoR			gs-sh	0	0	
conserved hypothetical protein			hypothetical protein		CDS	Putative replicase			lit-s	base_one HP	base_one HP	
phosphatase YidA	3.1.3.-	yidA	HAD-superfamily hydrolase, subfamily IIB		CDS	Phosphatase YidA			gs-sh	lit-s	map	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00638813: hypothetical protein			base_one HP	base_one HP	lit-s	
DNA gyrase, B subunit	5.99.1.3	gyrB	DNA gyrase subunit B (EC 5.99.1.3)	5.99.1.3	CDS	DNA gyrase subunit B	5.99.1.3		base_tigr	base_ec	base_ec	
DNA replication and repair protein recF		recF	DNA replication and repair protein RecF		CDS	DNA recombination and repair protein RecF			lit-s	gs-sh	gs-sh	
DNA polymerase III, beta subunit	2.7.7.7	dnaN	DNA polymerase III, beta subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III beta subunit	2.7.7.7		base_tigr	base_ec	base_ec	
chromosomal replication initiator protein DnaA		dnaA	chromosomal replication initiator protein DnaA		CDS	Chromosomal replication initiator protein DnaA			base_lit-s	lit-s	lit-s	
ribonuclease P protein component	3.1.26.5	rnpA	ribonuclease P protein component (EC 3.1.26.5)	3.1.26.5	CDS	Ribonuclease P protein component	3.1.26.5		base_tigr	base_ec	base_ec	
inner membrane protein oxaA		oxaA	protein translocase subunit yidC		CDS	"Inner membrane protein translocase component YidC, long form"			gs-sh	gs-sh	gs-sh	
tRNA modification GTPase TrmE	3.6.-.-	trmE	tRNA modification GTPase trmE	3.6.-	CDS	GTPase and tRNA-U34 5-formylation enzyme TrmE			lit-s	pfam-sh	gs-sh	
tryptophanase	4.1.99.1	tnaA	tryptophanase (EC 4.1.99.1)	4.1.99.1	CDS	Tryptophanase	4.1.99.1		base_tigr	base_ec	base_ec	
low affinity tryptophan permease		tnaB	aromatic amino acid transport protein		CDS	Tryptophan-specific transport protein			gs-sh	orth	map	
multidrug resistance protein mdtL		mdtL	Arabinose efflux permease		CDS	Putative transport protein			gs-sh	0	0	
HTH-type transcriptional regulator yidZ		yidZ	Transcriptional regulator		CDS	Putative LysR-family transcriptional regulator YidZ			gs-sh	gs-sh	gs-sh	
putative phosphopantetheinyl transferase			Phosphopantetheinyl transferase		CDS	FIG004212: hypothetical protein			lit-s	0	0	
NADPH-dependent FMN reductase family protein			Predicted flavoprotein		CDS	Putative oxidoreductase			0	0	0	
putative adenine permease PurP			Permeases		CDS	Xanthine/uracil/thiamine/ascorbate permease family protein			0	0	0	
HAD hydrolase, IA, variant 1 family protein			haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED		CDS	Putative phosphatase YieH			0	0	0	
inner membrane protein CbrB		cbrB	hypothetical protein		CDS	FIG00638032: hypothetical protein			base_one HP	0	base_one HP	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00638764: hypothetical protein			base_one HP	base_one HP	lit-s	
glucosamine-6-phosphate isomerases/6-phosphogluconolactonase family protein			6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase		CDS	hypothetical protein			0	base_one HP	base_one HP	
conserved hypothetical protein			Enterochelin esterase and related enzymes		CDS	"Endo-1,4-beta-xylanase A precursor"	3.2.1.8		base_one HP	base_one HP	0	
cryptic outer membrane porin BglH		bglH	Maltoporin (phage lambda and maltose receptor)		CDS	"Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein)"			gs-sh	0	0	
cellulase family protein			Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	3.2.1.86	CDS	6-phospho-beta-glucosidase	3.2.1.86		0	0	base_ec	
PTS system beta-glucoside-specific EIIBCA component	2.7.1.-	bglF	PTS system beta-glucoside-specific IIA component, Glc family (TC 4.A.1.2.2)/PTS system beta-glucoside-specific IIB component, Glc family (TC 4.A.1.2.2)/PTS system beta-glucoside-specific IIC component, Glc family (TC 4.A.1.2.2)		CDS	"PTS system, beta-glucoside-specific IIB component / PTS system, beta-glucoside-specific IIC component / PTS system, beta-glucoside-specific IIA component"	2.7.1.69, 2.7.1.69, 2.7.1.69		gs-sh	tf_idf	map	
cryptic beta-glucoside bgl operon antiterminator		bglG	transcriptional antiterminator, BglG family		CDS	"Beta-glucoside bgl operon antiterminator, BglG family"			gs-sh	tf_idf	map	
phosphate transport system regulatory protein PhoU		phoU	phosphate uptake regulator, PhoU		CDS	Phosphate transport system regulatory protein PhoU			base_tigr	lit-s	pfam-sh	
phosphate ABC transporter, ATP-binding protein	3.6.3.27	pstB	phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1)	3.6.3.27	CDS	Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)			base_tigr	gs-sh	gs-sh	
phosphate ABC transporter, permease protein PstA		pstA	phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)		CDS	Phosphate transport system permease protein PstA (TC 3.A.1.7.1)			base_tigr	gs-sh	gs-sh	
phosphate ABC transporter, permease protein PstC		pstC	phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1)		CDS	Phosphate transport system permease protein PstC (TC 3.A.1.7.1)			base_tigr	gs-sh	gs-sh	
phosphate ABC transporter, phosphate-binding protein PstS		pstS	phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)		CDS	"Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)"			base_tigr	gs-sh	gs-sh	
glutamine-fructose-6-phosphate transaminase	2.6.1.16	glmS	glutamine--fructose-6-phosphate transaminase	2.6.1.16	CDS	Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]	2.6.1.16		base_tigr	base_ec	base_ec	
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	2.7.7.23	glmU	UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase	2.3.1.157, 2.7.7.23,2.7.7.23, 2.3.1.157	CDS	N-acetylglucosamine-1-phosphate uridyltransferase / Glucosamine-1-phosphate N-acetyltransferase	2.7.7.23, 2.3.1.157		base_tigr	base_ec-d	base_ec-d	
ATP synthase F1, epsilon subunit	3.6.3.14	atpC	ATP synthase F1 subcomplex epsilon subunit	3.6.3.14	CDS	ATP synthase epsilon chain	3.6.3.14		base_tigr	base_ec	base_ec	
ATP synthase F1, beta subunit	3.6.3.14	atpD	ATP synthase F1 subcomplex beta subunit	3.6.3.14	CDS	ATP synthase beta chain	3.6.3.14		base_tigr	base_ec	base_ec	
ATP synthase F1, gamma subunit	3.6.3.14	atpG	ATP synthase, F1 gamma subunit	3.6.3.14	CDS	ATP synthase gamma chain	3.6.3.14		base_tigr	base_ec	base_ec	
ATP synthase F1, alpha subunit	3.6.3.14	atpA	proton translocating ATP synthase, F1 alpha subunit	3.6.3.14	CDS	ATP synthase alpha chain	3.6.3.14		base_tigr	base_ec	base_ec	
ATP synthase F1, delta subunit	3.6.3.14	atpH	ATP synthase F1 subcomplex delta subunit	3.6.3.14	CDS	ATP synthase delta chain	3.6.3.14		base_tigr	base_ec	base_ec	
ATP synthase F0, B subunit	3.6.3.14	atpF	ATP synthase F0 subcomplex B subunit	3.6.3.14	CDS	ATP synthase B chain	3.6.3.14		base_tigr	base_ec	base_ec	
ATP synthase F0, C subunit	3.6.3.14	atpE	ATP synthase, F0 subunit c	3.6.3.14	CDS	ATP synthase C chain	3.6.3.14		base_tigr	base_ec	base_ec	
ATP synthase F0, A subunit	3.6.3.14	atpB	ATP synthase F0 subcomplex A subunit	3.6.3.14	CDS	ATP synthase A chain	3.6.3.14		base_tigr	base_ec	base_ec	
putative membrane protein			F0F1-type ATP synthase, subunit I		CDS	hypothetical protein			0	base_one HP	base_one HP	
16S rRNA (guanine(527)-N(7))-methyltransferase GidB	2.1.1.170	gidB	16S rRNA m(7)G-527 methyltransferase (EC 2.1.1.170)	2.1.1.170	CDS	rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB			base_tigr	pfam-sh	gs-sh	
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA		gidA	glucose-inhibited division protein A		CDS	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA			base_tigr	base_lit-s	gs-sh	
protein mioC		mioC	Flavodoxins		CDS	Flavoprotein MioC			gs-sh	0	0	
regulatory protein AsnC		asnC	transcriptional regulator, AsnC family		CDS	Regulatory protein AsnC			gs-sh	lit-s	map	
aspartate--ammonia ligase	6.3.1.1	asnA	aspartate-ammonia ligase (EC 6.3.1.1)	6.3.1.1	CDS	Aspartate--ammonia ligase	6.3.1.1		base_tigr	base_ec	base_ec	
VWA domain containing CoxE-like family protein			Uncharacterized protein containing a von Willebrand factor type A (vWA) domain		CDS	FIG00637882: hypothetical protein			0	0	0	
ATPase ravA	3.6.3.-	ravA	MoxR-like ATPases	3.6.3.-	CDS	Putative regulator protein			gs-sh	0	0	
potassium uptake protein		kup	potassium uptake protein		CDS	Kup system potassium uptake protein			base_lit-s	0	0	
rbsD / FucU transport family protein			ribose transport protein RbsD	5.-	CDS	"Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)"			gs-sh	gs-sh	gs-sh	
heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	ribose ABC transporter ATP-binding protein	3.6.3.17	CDS	"Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)"			base_ec-d	0	tf_idf	
branched-chain amino acid transport system / permease component family protein			ribose ABC transporter membrane protein		CDS	"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)"			0	0	0	
D-ribose-binding periplasmic protein		rbsB	ribose-binding protein		CDS	"Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)"			gs-sh	gs-sh	gs-sh	
ribokinase	2.7.1.15	rbsK	ribokinase	2.7.1.15	CDS	Ribokinase	2.7.1.15		base_lit-s	base_ec	base_ec	
putative transport protein hsrA			drug resistance transporter, EmrB/QacA subfamily		CDS	Permeases of the major facilitator superfamily			gs-sh	0	0	
ribose operon repressor		rbsR	transcriptional regulator, LacI family		CDS	Ribose operon repressor			gs-sh	lit-s	orth	
bacterial regulatory s, gntR family protein			transcriptional regulator, GntR family		CDS	"Transcriptional regulator, GntR family"			gs-sh	gs-sh	lit-s	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	HTH-type transcriptional regulator hdfR			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Protein yifE			base_one HP	base_one HP	gs-sh	
sigma-54 interaction domain protein			Mg chelatase-related protein		CDS	MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein			0	0	gs-sh	
thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein			Thiamine pyrophosphate enzyme, N-terminal TPP binding domain./Thiamine pyrophosphate enzyme, central domain.	2.2.1.6	CDS	Acetolactate synthase large subunit	2.2.1.6		0	0	base_ec	
thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein			Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.		CDS	Acetolactate synthase large subunit	2.2.1.6		lit-s	0	0	
acetolactate synthase isozyme 2 small subunit	2.2.1.6	ilvM	acetolactate synthase, small subunit (EC 2.2.1.6)	2.2.1.6	CDS	Acetolactate synthase small subunit	2.2.1.6		base_ec	base_ec	base_ec	
branched-chain amino acid aminotransferase	2.6.1.42	ilvE	branched chain amino acid aminotransferase apoenzyme (EC 2.6.1.42)	2.6.1.42	CDS	Branched-chain amino acid aminotransferase	2.6.1.42		base_tigr	base_ec	base_ec	
dihydroxy-acid dehydratase	4.2.1.9	ilvD	dihydroxy-acid dehydratase	4.2.1.9	CDS	Dihydroxy-acid dehydratase	4.2.1.9		base_lit-s	base_ec	base_ec	
threonine ammonia-lyase, biosynthetic	4.3.1.19	ilvA	threonine ammonia-lyase, biosynthetic, long form	4.3.1.19	CDS	Threonine dehydratase biosynthetic	4.3.1.19		base_tigr	base_ec	base_ec	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	HTH-type transcriptional regulator IlvY			gs-sh	0	0	
ketol-acid reductoisomerase	1.1.1.86	ilvC	ketol-acid reductoisomerase (EC 1.1.1.86)	1.1.1.86	CDS	Ketol-acid reductoisomerase	1.1.1.86		base_tigr	base_ec	base_ec	
peptidyl-prolyl cis-trans isomerase C	5.2.1.8	ppiC	Parvulin-like peptidyl-prolyl isomerase	5.2.1.8	CDS	Peptidyl-prolyl cis-trans isomerase PpiC	5.2.1.8		base_ec	base_ec	base_ec	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
ATP-dependent DNA helicase Rep	3.6.4.12	rep	ATP-dependent DNA helicase Rep	3.6.4.12,3.6.1.-	CDS	ATP-dependent DNA helicase Rep			base_lit-s	base_lit-s	base_lit-s	
ppx/GppA phosphatase family protein			Exopolyphosphatase	3.6.1.11, 3.6.1.40	CDS	"Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase @ Exopolyphosphatase"	3.6.1.40, 3.6.1.11		gs-sh	0	base_ec-d	
ATP-dependent RNA helicase rhlB	3.6.4.13	rhlB	Superfamily II DNA and RNA helicases	3.6.4.13	CDS	ATP-dependent RNA helicase RhlB			base_ec	lit-s	map	
thioredoxin		trxA	thioredoxin		CDS	Thioredoxin			base_lit-s	lit-s	lit-s	
transcription termination factor Rho	3.6.4.-	rho	transcription termination factor Rho		CDS	Transcription termination factor Rho			base_lit-s	lit-s	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	orf; Unknown function			lit-s	base_one HP	base_one HP	
undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase	2.7.8.33	wecA	undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase	2.7.8.33	CDS	Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase	2.7.8.-		base_lit-s	0	0	
lipopolysaccharide biosynthesis protein wzzE		wzzE	Chain length determinant protein		CDS	regulator of length of O-antigen component of lipopolysaccharide chains			gs-sh	0	0	
UDP-N-acetylglucosamine 2-epimerase	5.1.3.14		UDP-N-acetylglucosamine 2-epimerase	5.1.3.14	CDS	UDP-N-acetylglucosamine 2-epimerase	5.1.3.14		base_lit-s	base_lit-s	base_lit-s	
nucleotide sugar dehydrogenase family protein			nucleotide sugar dehydrogenase	1.1.1.-	CDS	UDP-glucose dehydrogenase	1.1.1.22		base_tigr	0	0	
dTDP-glucose 4,6-dehydratase	4.2.1.46	rfbB	dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	4.2.1.46	CDS	"dTDP-glucose 4,6-dehydratase"	4.2.1.46		base_tigr	base_ec	base_ec	
glucose-1-phosphate thymidylyltransferase	2.7.7.24	rfbA	Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	2.7.7.24	CDS	Glucose-1-phosphate thymidylyltransferase	2.7.7.24		base_tigr	base_ec	base_ec	
TDP-D-fucosamine acetyltransferase		wecD	TDP-D-fucosamine acetyltransferase		CDS	Lipopolysaccharide biosynthesis protein RffC			base_lit-s	orth	orth	
TDP-4-keto-6-deoxy-D-glucose transaminase family protein		wecE	TDP-4-keto-6-deoxy-D-glucose transaminase		CDS	4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase			base_tigr	0	0	
protein wzxE		wzxE	Membrane protein involved in the export of O-antigen and teichoic acid		CDS	WzxE protein			gs-sh	lit-s	map	
4-alpha-L-fucosyltransferase	2.4.1.-	wecF	4-alpha-L-fucosyltransferase glycosyl transferase group 56.	2.4.1.-	CDS	4-alpha-L-fucosyltransferase	2.4.1.-		gs-sh	base_lit-s	map	
wzyE family protein			WzyE protein.	2.4.1.-	CDS	Putative ECA polymerase			lit-s	gs-sh	map	
glycosyltransferase, WecB/TagA/CpsF family protein	2.4.1.-		bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family	2.4.1.-	CDS	Probable UDP-N-acetyl-D-mannosaminuronic acid transferase	2.4.1.-		base_tigr	0	0	
putative transport protein YifK			amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	Probable transport protein YifK			0	lit-s	0	
anaerobic sulfatase maturase	1.1.99.-		anaerobic sulfatase-maturating enzyme		CDS	Putative arylsulfatase regulatory protein			0	0	orth	
type I phosphodiesterase / nucleotide pyrophosphatase family protein			Arylsulfatase A and related enzymes	3.1.6.1	CDS	Arylsulfatase	3.1.6.1		0	0	base_ec	
hemY family protein			Uncharacterized enzyme of heme biosynthesis		CDS	Homolog of E. coli HemY protein			gs-sh	0	0	
putative uroporphyrinogen-III C-methyltransferase			Uncharacterized enzyme of heme biosynthesis	2.1.1.107	CDS	Homolog of E. coli HemX protein			orth	0	0	
uroporphyrinogen-III synthase HemD family protein			Uroporphyrinogen-III synthase	4.2.1.75	CDS	Uroporphyrinogen-III synthase	4.2.1.75		gs-sh	gs-sh	base_lit-s	
porphobilinogen deaminase	2.5.1.61	hemC	hydroxymethylbilane synthase (EC 2.5.1.61)	2.5.1.61	CDS	Porphobilinogen deaminase	2.5.1.61		base_tigr	base_ec	base_ec	
adenylate cyclase, class-I family protein			adenylate cyclase	4.6.1.1	CDS	Adenylate cyclase	4.6.1.1		tf_idf	tf_idf	base_ec	
iron donor protein CyaY		cyaY	iron donor protein CyaY		CDS	"Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly"			base_lit-s	0	0	
putative gatC						hypothetical protein			base_one miss	base_one HP	base_one HP	
prokaryotic lipo-attachment site family protein			Predicted small periplasmic lipoprotein		CDS	Putative lipoprotein			0	0	0	
diaminopimelate epimerase	5.1.1.7	dapF	diaminopimelate epimerase (EC 5.1.1.7)	5.1.1.7	CDS	Diaminopimelate epimerase	5.1.1.7		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Protein of unknown function DUF484			base_one HP	base_one HP	lit-s	
tyrosine recombinase XerC		xerC	tyrosine recombinase XerC subunit		CDS	Tyrosine recombinase XerC			base_tigr	lit-s	lit-s	
HAD hydrolase, IA, variant 1 family protein			haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E		CDS	2-haloalkanoic acid dehalogenase	3.8.1.2		0	0	0	
DNA helicase II	3.6.4.12	uvrD	ATP-dependent DNA helicase UvrD	3.6.4.12,3.6.1.-	CDS	ATP-dependent DNA helicase UvrD/PcrA			base_tigr	gs-sh	pfam-sh	
conserved hypothetical protein			Predicted periplasmic protein		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
magnesium and cobalt transport protein CorA		corA	magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)		CDS	Magnesium and cobalt transport protein CorA			base_tigr	lit-s	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF2628).		CDS	FIG01047791: hypothetical protein			base_one HP	base_one HP	lit-s	
inner membrane protein yigG		yigG	hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
protein rarD		rarD	rarD protein		CDS	Protein rarD			lit-s	lit-s	lit-s	
conserved hypothetical protein			uncharacterized domain 1		CDS	"putative protein PaaI, possibly involved in aromatic compounds catabolism"			base_one HP	base_one HP	gs-sh	
phospholipase A1	3.1.1.4	pldA	Outer membrane phospholipase A	3.1.1.32	CDS	"Phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); Outer membrane phospholipase A"			base_ec-d	tf_idf	tf_idf	
ATP-dependent DNA helicase RecQ	3.6.4.12	recQ	ATP-dependent DNA helicase RecQ	3.6.4.12,3.6.1.-	CDS	ATP-dependent DNA helicase RecQ			base_lit-s	base_lit-s	base_lit-s	
threonine efflux protein		rhtC	The Resistance to Homoserine/Threonine (RhtB) Family protein		CDS	L-lysine permease			gs-sh	0	0	
homoserine/homoserine lactone efflux protein		rhtB	The Resistance to Homoserine/Threonine (RhtB) Family protein		CDS	Homoserine/homoserine lactone efflux protein			gs-sh	lit-s	map	
alpha/beta hydrolase fold family protein			Lysophospholipase	3.1.1.5	CDS	Lysophospholipase L2	3.1.1.5		0	0	base_ec	
conserved protein, phosphatase-like domain		yigL	HAD-superfamily hydrolase, subfamily IIB		CDS	"Cof protein, HD superfamily hydrolase"			gs-sh	0	0	
			Transcriptional regulator		CDS				base_one miss	base_both miss	base_one miss	
carboxylate/amino acid/amine transporter family protein		yedA	Carboxylate/Amino Acid/Amine Transporter		CDS	FIG00639538: hypothetical protein			base_tigr	0	0	
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	2.1.1.14	metE	methionine synthase (B12-independent) (EC 2.1.1.14)	2.1.1.14	CDS	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	2.1.1.14		base_tigr	base_ec	base_ec	
putative dienelactone hydrolase			Dienelactone hydrolase and related enzymes	3.1.1.45	CDS	Putative carboxymethylenebutenolidase	3.1.1.45		lit-s	map	base_ec	
uridine phosphorylase	2.4.2.3	udp	uridine phosphorylase	2.4.2.3	CDS	Uridine phosphorylase	2.4.2.3		base_lit-s	base_ec	base_ec	
DNA recombination protein rmuC		rmuC	Uncharacterized protein conserved in bacteria		CDS	DNA recombination protein RmuC			gs-sh	lit-s	0	
ubiquinone/menaquinone biosynthesis methyltransferase ubiE	2.1.1.201	ubiE	ubiquinone/menaquinone biosynthesis methyltransferases	2.1.1.163, 2.1.1.201	CDS	"Ubiquinone/menaquinone biosynthesis methyltransferase UbiE @ 2-heptaprenyl-1,4-naphthoquinone methyltransferase"	2.1.1.-, 2.1.1.163		base_ec-d	gs-sh	gs-sh	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes			base_one HP	base_one HP	0	
2-polyprenylphenol 6-hydroxylase	1.14.13.-	ubiB	2-octaprenylphenol hydroxylase	1.14.13.-	CDS	Ubiquinone biosynthesis monooxygenase UbiB			base_tigr	gs-sh	gs-sh	
twin arginine-targeting translocase, TatA/E family protein		tatA	twin arginine-targeting protein translocase, TatA/E family		CDS	Twin-arginine translocation protein TatA			base_tigr	gs-sh	gs-sh	
twin arginine-targeting protein translocase TatB		tatB	Sec-independent protein translocase TatB		CDS	Twin-arginine translocation protein TatB			base_tigr	gs-sh	map	
twin arginine-targeting protein translocase TatC		tatC	Sec-independent protein translocase TatC		CDS	Twin-arginine translocation protein TatC			base_tigr	pfam-sh	pfam-sh	
transcriptional activator RfaH		rfaH	transcriptional activator RfaH		CDS	Transcriptional activator RfaH			base_lit-s	lit-s	lit-s	
deoxyribonuclease tatD	3.1.21.-	tatD	Sec-independent protein translocase TatD (EC 3.1.21.-)	3.1.21.-	CDS	Deoxyribonuclease TatD			gs-sh	lit-s	gs-sh	
ubiD decarboxylase family protein	4.1.1.-	ubiD	3-octaprenyl-4hydroxybenzoate decarboxylase (EC 4.1.1.-)	4.1.1.-	CDS	3-polyprenyl-4-hydroxybenzoate carboxy-lyase	4.1.1.-		base_tigr	gs-sh	map	
NAD(P)H-flavin reductase		fre	2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases	1.16.1.3	CDS	NAD(P)H-flavin reductase	1.5.1.29, 1.16.1.3		gs-sh	base_lit-s	base_ec-d	
acetyl-CoA C-acyltransferase FadA	2.3.1.16	fadA	fatty oxidation complex, beta subunit FadA	2.3.1.16	CDS	3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase	2.3.1.16, 2.3.1.9		base_ec	base_ec-d	base_ec-d	
fatty oxidation complex, alpha subunit FadB	4.2.1.17	fadB	fatty oxidation complex, alpha subunit FadB	1.1.1.35, 4.2.1.17, 5.1.2.3, 5.3.3.8	CDS	Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase	4.2.1.17, 5.3.3.8, 1.1.1.35, 5.1.2.3		base_lit-s	base_ec-d	base_ec-d	
xaa-Pro dipeptidase	3.4.13.9	pepQ	Xaa-Pro aminopeptidase	3.4.13.9	CDS	Xaa-Pro dipeptidase PepQ	3.4.13.9		base_ec	base_ec	base_ec	
conserved hypothetical protein			uncharacterized protein, YigZ family		CDS	FIG000605: protein co-occurring with transport systems (COG1739)			base_one HP	base_one HP	0	
potassium uptake protein TrkH			potassium uptake protein, TrkH family		CDS	Potassium uptake protein TrkH			lit-s	lit-s	lit-s	
protoporphyrinogen IX dehydrogenase [menaquinone]	1.3.5.3	hemG	protoporphyrinogen oxidase	1.3.5.3,1.3.3.4	CDS	"Protoporphyrinogen IX oxidase, oxygen-independent, HemG"	1.3.-.-		base_ec-d	0	0	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
conserved hypothetical protein									base_one HP	base_one HP	base_both miss	
									base_both miss	base_both miss	base_both miss	
molybdopterin-guanine dinucleotide biosynthesis protein B		mobB	molybdopterin guanine dinucleotide biosynthesis accessory protein MobB		CDS	Molybdopterin-guanine dinucleotide biosynthesis protein MobB			base_tigr	gs-sh	pfam-sh	
molybdopterin-guanine dinucleotide biosynthesis protein A		mobA	molybdenum cofactor guanylyltransferase	2.7.7.77	CDS	Molybdopterin-guanine dinucleotide biosynthesis protein MobA			base_tigr	gs-sh	gs-sh	
protein yihD		yihD	Uncharacterized protein conserved in bacteria		CDS	Protein yihD			gs-sh	lit-s	gs-sh	
phosphotransferase enzyme family protein			Putative homoserine kinase type II (protein kinase fold)		CDS	"YihE protein, a ser/thr kinase implicated in LPS synthesis and Cpx signalling"			0	0	0	
thiol:disulfide interchange protein DsbA		dsbA	Thiol:disulfide interchange protein DsbA		CDS	Periplasmic thiol:disulfide interchange protein DsbA			lit-s	tf_idf	tf_idf	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Putative GTP-binding protein			base_one HP	base_one HP	0	
putative acyltransferase yihG			1-acyl-sn-glycerol-3-phosphate acyltransferase		CDS	Probable acyltransferase yihG	2.3.-.-		gs-sh	lit-s	gs-sh	
conserved hypothetical protein						FIG00639588: hypothetical protein			base_one HP	base_one HP	base_one miss	
DNA polymerase I	2.7.7.7	polA	DNA polymerase I (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase I	2.7.7.7		base_ec	base_lit-s	base_ec	
ribosome biogenesis GTP-binding protein YsxC		ysxC	cell division checkpoint GTPase YihA		CDS	GTP-binding protein EngB			base_tigr	0	0	
									base_both miss	base_both miss	base_both miss	
der GTPase-activating protein YihI		yihI	Uncharacterized protein conserved in bacteria		CDS	Protein of unknown function DUF414			gs-sh	0	lit-s	
oxygen-independent coproporphyrinogen III oxidase	1.3.99.22	hemN	coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22)	1.3.99.22	CDS	"Coproporphyrinogen III oxidase, oxygen-independent"	1.3.99.22		base_tigr	base_ec	base_ec	
conserved hypothetical protein									base_one HP	base_one HP	base_both miss	
nitrogen regulation protein NR		ntrC	nitrogen regulation protein NR(I)		CDS	Nitrogen regulation protein NtrC			base_tigr	0	0	
nitrogen regulation protein NR	2.7.13.3	glnL	PAS/PAC sensor signal transduction histidine kinase (EC 2.7.13.3)	2.7.13.3	CDS	histidine protein kinase sensor for GlnG regulator			base_ec	0	0	
glutamine synthetase, type I	6.3.1.2	glnA	L-glutamine synthetase (EC 6.3.1.2)	6.3.1.2	CDS	Glutamine synthetase type I	6.3.1.2		base_tigr	base_ec	base_ec	
GTP-binding protein TypA/BipA		typA	GTP-binding protein TypA/BipA		CDS	GTP-binding protein TypA/BipA			base_lit-s	base_lit-s	base_lit-s	
bacterial regulatory s, gntR family protein			transcriptional regulator, GntR family		CDS	Hypothetical transcriptional regulator yihL			gs-sh	gs-sh	gs-sh	
xylose isomerase-like TIM barrel family protein			Sugar phosphate isomerases/epimerases		CDS	FIG00638475: hypothetical protein			0	0	0	
inner membrane protein yihN		yihN	Sugar phosphate permease		CDS	Putative resistance protein			gs-sh	orth	map	
porin ompL		ompL	porin OmpL (TC 1.B.21.2.1)		CDS	Outer membrane sugar transport protein YshA			lit-s	0	0	
inner membrane symporter yihP		yihP	sugar (Glycoside-Pentoside-Hexuronide) transporter		CDS	Glucuronide transport protein YihO			gs-sh	0	0	
inner membrane symporter yihP		yihP	sugar (Glycoside-Pentoside-Hexuronide) transporter		CDS	"Glucuronide transport protein YihP, homologous to YihO"			gs-sh	0	0	
glycosyl hydrolases 31 family protein			Alpha-glucosidases, family 31 of glycosyl hydrolases	3.2.1.20	CDS	Alpha-glucosyltransferase YihQ			0	0	0	
aldose 1-epimerase family protein			Galactose mutarotase and related enzymes		CDS	Sugar-1-epimerase YihR			0	0	0	
conserved hypothetical protein			N-acyl-D-glucosamine 2-epimerase		CDS	Aldose-ketose isomerase YihS			base_one HP	base_one HP	0	
conserved hypothetical protein			Tagatose-1,6-bisphosphate aldolase		CDS	Aldolase YihT			base_one HP	base_one HP	0	
NAD binding domain of 6-phosphogluconate dehydrogenase family protein			3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases	1.1.-	CDS	Oxidoreductase YihU			0	0	0	
pfkB carbohydrate kinase family protein			Sugar kinases, ribokinase family		CDS	Fructokinase; Sugar kinase YihV	2.7.1.4		gs-sh	0	0	
glycerol-3-phosphate regulon repressor		glpR	transcriptional regulator, DeoR family		CDS	DeoR-type transcriptional regulator YihW			gs-sh	gs-sh	gs-sh	
phosphatase yihX	3.1.3.-	yihX	haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED		CDS	probable haloacid dehalogenase-like hydrolase STY3852			gs-sh	0	0	
conserved hypothetical protein			tRNA-processing RNAse BN	3.1.-.-	CDS	"Inner membrane protein YihY, formerly thought to be RNase BN"			base_one HP	base_one HP	0	
D-tyrosyl-tRNA(Tyr) deacylase	3.1.-.-	dtd	D-tyrosyl-tRNA(Tyr) deacylase	3.1.-	CDS	D-tyrosyl-tRNA(Tyr) deacylase			base_lit-s	base_lit-s	base_lit-s	
putative thioesterase domain protein			thioesterase domain, putative		CDS	"galactoside O-acetyltransferase, probable YiiD"	2.3.1.18		base_tigr	0	0	
ribbon-helix-helix , copG family protein			Ribbon-helix-helix protein, copG family.		CDS	FIG00638378: hypothetical protein			lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638378: hypothetical protein			lit-s	base_one HP	base_one HP	
			hypothetical protein		CDS	FIG00640449: hypothetical protein			base_one HP	base_one miss	base_one HP	
formate dehydrogenase accessory protein FdhE		fdhE	Tat proofreading chaperone FdhE		CDS	formate dehydrogenase formation protein FdhE			base_tigr	pfam-sh	pfam-sh	
formate dehydrogenase, gamma subunit	1.2.1.2		formate dehydrogenase, gamma subunit		CDS	Formate dehydrogenase O gamma subunit	1.2.1.2		base_lit-s	base_ec	tf_idf	
formate dehydrogenase, beta subunit	1.2.1.2	fdxH	formate dehydrogenase (quinone-dependent) iron-sulfur subunit		CDS	Formate dehydrogenase O beta subunit	1.2.1.2		base_tigr	base_ec	map	
formate dehydrogenase, alpha subunit	1.2.1.2		formate dehydrogenase (quinone-dependent) catalytic subunit	1.2.1.2	CDS	Formate dehydrogenase O alpha subunit @ selenocysteine-containing	1.2.1.2		base_tigr	base_ec	base_ec	
molybdopterin oxidoreductase family protein			formate dehydrogenase (quinone-dependent) catalytic subunit	1.2.1.2	CDS				0	base_one miss	base_one miss	
conserved hypothetical protein						bogus protein			base_one HP	base_one HP	base_one miss	
formate dehydrogenase family accessory protein FdhD			formate dehydrogenase family accessory protein FdhD		CDS	Formate dehydrogenase chain D	1.2.1.2		base_lit-s	0	0	
conserved hypothetical protein			Protein of unknown function (DUF3829).		CDS	FIG00638858: hypothetical protein			base_one HP	base_one HP	lit-s	
putative frv operon regulatory protein			transcriptional antiterminator, BglG family		CDS	Putative frv operon regulatory protein			0	lit-s	0	
putative aminopeptidase ysdC			Cellulase M and related proteins		CDS	FIG00638402: hypothetical protein			gs-sh	0	0	
PTS system, Fru family, IIB component domain protein	2.7.1.69		PTS system IIB component, Fru family (TC 4.A.2)/PTS system IIC component, Fru family (TC 4.A.2)		CDS	"PTS system, fructose-specific IIB component / PTS system, fructose-specific IIC component"	2.7.1.69, 2.7.1.69		lit-s	base_ec-d	0	
fructose-like phosphotransferase enzyme IIA component	2.7.1.-	frvA	PTS system IIA component, Fru family (TC 4.A.2)	2.7.1.69	CDS	"PTS system, fructose-specific IIA component"	2.7.1.69		gs-sh	orth	base_ec	
L-rhamnose 1-epimerase	5.1.3.-	rhaU	L-rhamnose 1-epimerase	5.1.3.-	CDS	L-rhamnose mutarotase			base_lit-s	orth	orth	
rhamnulose-1-phosphate aldolase	4.1.2.19	rhaD	L-rhamnulose 1-phosphate aldolase (EC 4.1.2.19)	4.1.2.19	CDS	Rhamnulose-1-phosphate aldolase	4.1.2.19		base_tigr	base_ec	base_ec	
L-rhamnose isomerase	5.3.1.14	rhaA	L-rhamnose isomerase (EC 5.3.1.14)	5.3.1.14	CDS	L-rhamnose isomerase	5.3.1.14		base_tigr	base_lit-s	base_ec	
rhamnulokinase	2.7.1.5	rhaB	L-rhamnulokinase (EC 2.7.1.5)	2.7.1.5	CDS	Rhamnulokinase	2.7.1.5		base_tigr	base_ec	base_ec	
cupin domain protein			transcriptional regulator, AraC family		CDS	L-rhamnose operon regulatory protein RhaS			0	0	0	
L-rhamnose-proton symporter		rhaT	RhaT L-rhamnose-proton symporter family protein		CDS	L-rhamnose-proton symporter			gs-sh	base_lit-s	tf_idf	
HTH-type transcriptional activator rhaR		rhaR	transcriptional regulator, AraC family		CDS	L-rhamnose operon transcriptional activator RhaR			gs-sh	gs-sh	orth	
superoxide dismutase [Mn]	1.15.1.1	sodA	Superoxide dismutase	1.15.1.1	CDS	Manganese superoxide dismutase	1.15.1.1		base_ec	base_ec	base_ec	
2-keto-3-deoxygluconate transporter		kdgT	2-keto-3-deoxygluconate permease (TC 2.A.10.1.1)		CDS	2-keto-3-deoxygluconate permease (KDG permease)			base_tigr	map	tf_idf	
protein yiiM		yiiM	Uncharacterized protein conserved in bacteria		CDS	Uncharacterized protein conserved in bacteria			gs-sh	0	base_lit-s	
sensor protein CpxA	2.7.13.3	cpxA	Signal transduction histidine kinase	2.7.13.3	CDS	Copper sensory histidine kinase CpxA			base_ec	0	0	
transcriptional regulatory protein CpxR		cpxR	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	Copper-sensing two-component system response regulator CpxR			gs-sh	0	0	
periplasmic protein CpxP		cpxP	P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein		CDS	"P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein"			gs-sh	map	lit-s	
ferrous-iron efflux pump FieF		fieF	cation diffusion facilitator family transporter		CDS	Cobalt-zinc-cadmium resistance protein			gs-sh	0	0	
6-phosphofructokinase	2.7.1.11	pfkA	6-phosphofructokinase (EC 2.7.1.11)	2.7.1.11	CDS	6-phosphofructokinase	2.7.1.11		base_tigr	base_lit-s	base_ec	
sulfate-binding protein		sbp	sulfate/thiosulfate-binding protein		CDS	Sulfate-binding protein Sbp			gs-sh	0	0	
CDP-diacylglycerol pyrophosphatase	3.6.1.26	cdh	CDP-diacylglycerol pyrophosphatase, bacterial type	3.6.1.26	CDS	CDP-diacylglycerol pyrophosphatase	3.6.1.26		base_tigr	base_lit-s	base_ec	
triose-phosphate isomerase	5.3.1.1	tpiA	triosephosphate isomerase (EC 5.3.1.1)	5.3.1.1	CDS	Triosephosphate isomerase	5.3.1.1		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF1454).		CDS	Putative uncharacterized protein YiiQ			base_one HP	base_one HP	0	
conserved hypothetical protein			Predicted membrane protein		CDS	Putative membrane protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			conserved hypothetical protein		CDS	FIG00639264: hypothetical protein			base_lit-s	base_one HP	base_one HP	
universal stress family protein			Universal stress protein UspA and related nucleotide-binding proteins		CDS	Universal stress protein D			0	0	0	
ferredoxin--NADP reductase	1.18.1.2	fpr	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	1.18.1.2	CDS	Ferredoxin--NADP(+) reductase	1.18.1.2		base_ec	base_ec	base_ec	
fructose-1,6-bisphosphatase, class II	3.1.3.11	glpX	fructose-1,6-bisphosphatase, class II	3.1.3.11	CDS	"Fructose-1,6-bisphosphatase, GlpX type"	3.1.3.11		base_lit-s	base_ec	base_ec	
glycerol kinase	2.7.1.30	glpK	glycerol kinase (EC 2.7.1.30)	2.7.1.30	CDS	Glycerol kinase	2.7.1.30		base_tigr	base_ec	base_ec	
glycerol uptake facilitator protein		glpF	MIP family channel proteins		CDS	Glycerol uptake facilitator protein			gs-sh	lit-s	map	
cell division protein ZapB		zapB	Uncharacterized protein conserved in bacteria		CDS	Putative cytoplasmic protein			gs-sh	orth	0	
regulator of ribonuclease activity A		rraA	regulator of ribonuclease activity A		CDS	Ribonuclease E inhibitor RraA			base_lit-s	gs-sh	map	
1,4-dihydroxy-2-naphthoate octaprenyltransferase	2.5.1.74	menA	1,4-dihydroxy-2-naphthoate prenyltransferase	2.5.1.-, 2.5.1.74,2.5.1.74	CDS	"1,4-dihydroxy-2-naphthoate octaprenyltransferase"	2.5.1.74		base_tigr	base_ec	map	
ATP-dependent protease HslVU, ATPase subunit		hslU	ATP-dependent protease HslVU, ATPase subunit		CDS	ATP-dependent hsl protease ATP-binding subunit HslU			base_lit-s	gs-sh	gs-sh	
ATP-dependent protease HslVU, peptidase subunit	3.4.25.2	hslV	HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B	3.4.25.2	CDS	ATP-dependent protease HslV	3.4.25.-		base_tigr	gs-sh	gs-sh	
cell division protein FtsN		ftsN	cell division protein FtsN		CDS	Cell division protein FtsN			base_lit-s	lit-s	lit-s	
periplasmic binding s and sugar binding domain of LacI family protein			transcriptional regulator, LacI family		CDS	Transcriptional (co)regulator CytR			pfam-sh	0	0	
primosomal protein N'	3.6.1.-	priA	replication restart DNA helicase PriA	3.6.4.-	CDS	Helicase PriA essential for oriC/DnaA-independent DNA replication			base_tigr	gs-sh	gs-sh	
ribosomal protein L31		rpmE	LSU ribosomal protein L31P		CDS	"LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent"			base_tigr	0	0	
conserved hypothetical protein			Orthopoxvirus protein of unknown function (DUF830).		CDS	FIG00638928: hypothetical protein			base_one HP	base_one HP	0	
met Apo-repressor, MetJ family protein			methionine repressor, MetJ		CDS	Methionine repressor MetJ			pfam-sh	pfam-sh	lit-s	
O-succinylhomoserine (thiol)-lyase	2.5.1.48	metB	cystathionine gamma-synthase (EC 2.5.1.48)	2.5.1.48	CDS	Cystathionine gamma-synthase	2.5.1.48		base_tigr	base_ec	base_ec	
bifunctional aspartokinase/homoserine dehydrogenase 2	1.1.1.3	metL	aspartate kinase	1.1.1.3, 2.7.2.4	CDS	Aspartokinase / Homoserine dehydrogenase	2.7.2.4, 1.1.1.3		base_ec-d	base_ec-d	base_ec-d	
5,10-methylenetetrahydrofolate reductase	1.5.1.20	metF	5,10-methylenetetrahydrofolate reductase (NAD(P)) (EC 1.5.1.20)	1.5.1.20	CDS	"5,10-methylenetetrahydrofolate reductase"	1.5.1.20		base_tigr	base_ec	base_ec	
catalase/peroxidase HPI	1.11.1.6	katG	catalase/peroxidase HPI	1.11.1.21	CDS	Catalase / Peroxidase	1.11.1.6, 1.11.1.7		base_lit-s	base_ec-d	base_ec-d	
conserved hypothetical protein			Predicted permeases		CDS	FIG00638276: hypothetical protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00638062: hypothetical protein			base_one HP	base_one HP	lit-s	
glycerol dehydrogenase	1.1.1.6	gldA	glycerol 2-dehydrogenase (NAD+) (EC 1.1.1.6)	1.1.1.6	CDS	Glycerol dehydrogenase	1.1.1.6		base_ec	base_ec	base_ec	
fructose-6-phosphate aldolase	4.1.2.-	fsa	fructose 6-phosphate aldolase (EC 4.1.2.-)	4.1.2.-	CDS	Transaldolase	2.2.1.2		base_tigr	0	0	
phosphoenolpyruvate-protein phosphotransferase	2.7.3.9	ptsP	Phosphocarrier protein HPr/phosphoenolpyruvate--protein phosphotransferase/PTS system unknown substrate IIA component, Fru family (TC 4.A.2.1.10)	2.7.1.69,2.7.3.9	CDS	Phosphoenolpyruvate-protein phosphotransferase of PTS system	2.7.3.9		base_ec-d	base_ec	base_ec-d	
PTS system, Fru family, IIC component domain protein			PTS system unknown substrate IIC component, Fru family (TC 4.A.2.1.10)		CDS	"PTS system, fructose-specific IIC component"	2.7.1.69		base_tigr	0	0	
fructose-like phosphotransferase enzyme IIB component 2	2.7.1.69	frwB	PTS system unknown substrate IIB component 1, Fru family (TC 4.A.2.1.10)	2.7.1.69	CDS	PTS system fructose-like IIB component 1 precursor	2.7.1.69		base_ec	base_ec	base_ec	
glycerol dehydratase		dhaB1	pyruvate formate-lyase	2.3.1.54	CDS	Pyruvate formate-lyase	2.3.1.54		gs-sh	map	base_ec	
glycyl-radical enzyme activating family protein	1.97.1.-		Pyruvate-formate lyase-activating enzyme	1.97.1.4	CDS	Pyruvate formate-lyase activating enzyme	1.97.1.4		map	orth	base_ec	
bacterial regulatory helix-turn-helix s, AraC family protein			transcriptional regulator, AraC family		CDS	"Transcriptional regulator, AraC family"			pfam-sh	pfam-sh	lit-s	
fructose-like phosphotransferase enzyme IIB component 2	2.7.1.69	frwB	PTS system unknown substrate IIB component 2, Fru family (TC 4.A.2.1.10)	2.7.1.69	CDS	PTS system fructose-like IIB component 2 precursor	2.7.1.69		base_ec	base_ec	base_ec	
phosphoethanolamine transferase CptA	2.7.-.-	cptA	Predicted membrane-associated, metal-dependent hydrolase		CDS	UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide			gs-sh	0	0	
phosphoenolpyruvate carboxylase family protein			Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31)	4.1.1.31	CDS	Phosphoenolpyruvate carboxylase	4.1.1.31		tf_idf	lit-s	base_ec	
acetylornithine deacetylase	3.5.1.16	argE	acetylornithine deacetylase (ArgE)	3.5.1.16	CDS	Acetylornithine deacetylase	3.5.1.16		base_tigr	base_ec	base_ec	
N-acetyl-gamma-glutamyl-phosphate reductase	1.2.1.38	argC	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	1.2.1.38	CDS	N-acetyl-gamma-glutamyl-phosphate reductase	1.2.1.38		base_tigr	base_lit-s	base_ec	
acetylglutamate kinase	2.7.2.8	argB	N-acetylglutamate kinase (EC 2.7.2.8)	2.7.2.8	CDS	Acetylglutamate kinase	2.7.2.8		base_tigr	base_ec	base_ec	
argininosuccinate lyase	4.3.2.1	argH	argininosuccinate lyase (EC 4.3.2.1)	4.3.2.1	CDS	Argininosuccinate lyase	4.3.2.1		base_tigr	base_ec	base_ec	
pyridine nucleotide-disulfide oxidoreductase family protein			Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes	1.6.1.1	CDS	Soluble pyridine nucleotide transhydrogenase	1.6.1.1		0	0	base_ec	
hydrogen peroxide-inducible gene activator		oxyR	Transcriptional regulator		CDS	Hydrogen peroxide-inducible genes activator			gs-sh	lit-s	orth	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Unsaturated fatty acid biosythesis repressor FabR, TetR family"			gs-sh	gs-sh	pfam-sh	
inner membrane protein yijD		yijD	Protein of unknown function (DUF1422).		CDS	Putative inner membrane protein			gs-sh	orth	0	
tRNA (uracil-5-)-methyltransferase	2.1.1.35	trmA	tRNA (uracil-5-)-methyltransferase	2.1.1.35	CDS	tRNA (uracil(54)-C5)-methyltransferase	2.1.1.35		base_lit-s	base_ec	base_ec	
tonB-dependent vitamin B12 receptor		btuB	TonB-dependent vitamin B12 receptor		CDS	Outer membrane vitamin B12 receptor BtuB			base_tigr	gs-sh	tf_idf	
glutamate racemase	5.1.1.3	murI	glutamate racemase (EC 5.1.1.3)	5.1.1.3	CDS	Glutamate racemase	5.1.1.3		base_tigr	base_ec	base_ec	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
UDP-N-acetylenolpyruvoylglucosamine reductase	1.1.1.158	murB	UDP-N-acetylmuramate dehydrogenase (EC 1.1.1.158)	1.1.1.158	CDS	UDP-N-acetylenolpyruvoylglucosamine reductase	1.1.1.158		base_tigr	base_lit-s	base_ec	
bifunctional protein BirA	6.3.4.15	birA	birA, biotin-[acetyl-CoA-carboxylase] ligase region/BirA biotin operon repressor domain	6.3.4.15	CDS	Biotin operon repressor / Biotin-protein ligase	6.3.4.15		base_ec	base_ec	base_ec	
pantothenate kinase	2.7.1.33	coaA	pantothenate kinase (EC 2.7.1.33)	2.7.1.33	CDS	Pantothenate kinase	2.7.1.33		base_tigr	base_ec	base_ec	
conserved hypothetical protein						FIG00639135: hypothetical protein			base_one HP	base_one HP	base_one miss	
translation elongation factor Tu		tuf	translation elongation factor 1A (EF-1A/EF-Tu)		CDS	Translation elongation factor Tu			gs-sh	lit-s	map	
preprotein translocase, SecE subunit		secE	protein translocase subunit secE/sec61 gamma		CDS	Preprotein translocase subunit SecE (TC 3.A.5.1.1)			base_tigr	lit-s	gs-sh	
transcription termination/antitermination factor NusG		nusG	transcription antitermination protein nusG		CDS	Transcription antitermination protein NusG			base_tigr	pfam-sh	lit-s	
ribosomal protein L11		rplK	LSU ribosomal protein L11P		CDS	LSU ribosomal protein L11p (L12e)			base_tigr	0	0	
ribosomal protein L1		rplA	LSU ribosomal protein L1P		CDS	LSU ribosomal protein L1p (L10Ae)			base_tigr	0	0	
50S ribosomal protein L10		rplJ	LSU ribosomal protein L10P		CDS	LSU ribosomal protein L10p (P0)			gs-sh	0	0	
ribosomal protein L7/L12		rplL	LSU ribosomal protein L12P		CDS	LSU ribosomal protein L7/L12 (P1/P2)			base_tigr	0	0	
DNA-directed RNA polymerase, beta subunit	2.7.7.6	rpoB	DNA-directed RNA polymerase subunit beta (EC 2.7.7.6)	2.7.7.6	CDS	DNA-directed RNA polymerase beta subunit	2.7.7.6		base_tigr	base_ec	base_ec	
DNA-directed RNA polymerase, beta' subunit	2.7.7.6	rpoC	DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6)	2.7.7.6	CDS	DNA-directed RNA polymerase beta' subunit	2.7.7.6		base_tigr	base_ec	base_ec	
heat shock protein C		htrC	hypothetical protein		CDS	Heat shock protein C			base_one HP	lit-s	base_one HP	
									base_both miss	base_both miss	base_both miss	
thiazole biosynthesis protein ThiH		thiH	tyrosine lyase ThiH		CDS	Thiazole biosynthesis protein ThiH			base_tigr	lit-s	gs-sh	
thiazole synthase	4.-.-.-	thiG	thiazole-phosphate synthase		CDS	Thiazole biosynthesis protein ThiG			gs-sh	gs-sh	gs-sh	
thiamine biosynthesis protein ThiS		thiS	sulfur carrier protein ThiS		CDS	Sulfur carrier protein ThiS			base_tigr	pfam-sh	lit-s	
thiazole biosynthesis adenylyltransferase ThiF	2.7.7.73	thiF	[sulfur carrier protein ThiS] adenylyltransferase	2.7.7.73	CDS	Sulfur carrier protein adenylyltransferase ThiF			base_tigr	pfam-sh	gs-sh	
thiamine-phosphate pyrophosphorylase	2.5.1.3	thiE	thiamine-phosphate diphosphorylase	2.5.1.3	CDS	Thiamin-phosphate pyrophosphorylase	2.5.1.3		base_ec	base_ec	base_ec	
thiamine biosynthesis protein ThiC		thiC	hydroxymethylpyrimidine synthase		CDS	Thiamin biosynthesis protein ThiC			base_tigr	pfam-sh	gs-sh	
regulator of sigma D		rsd	Regulator of sigma D		CDS	Regulator of sigma D			lit-s	lit-s	base_lit-s	
NUDIX domain protein			NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding	3.6.1.22	CDS	NADH pyrophosphatase	3.6.1.22		0	0	base_ec	
uroporphyrinogen decarboxylase	4.1.1.37	hemE	uroporphyrinogen decarboxylase (EC 4.1.1.37)	4.1.1.37	CDS	Uroporphyrinogen III decarboxylase	4.1.1.37		base_tigr	base_ec	base_ec	
endonuclease V	3.1.21.7	nfi	Endonuclease V	3.1.21.7,3.1.21.-	CDS	Endonuclease V	3.1.21.7		lit-s	base_ec	base_lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG01200173: hypothetical protein			base_one HP	base_one HP	lit-s	
DNA-binding protein HU-alpha		hupA	bacterial nucleoid protein HU alpha subunit		CDS	DNA-binding protein HU-alpha			gs-sh	base_lit-s	map	
conserved hypothetical protein			Protein of unknown function (DUF1481).		CDS	FIG00638261: hypothetical protein			base_one HP	base_one HP	lit-s	
zinc resistance-associated protein		zraP	P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein		CDS	Zinc resistance-associated protein			gs-sh	lit-s	map	
sensor protein zraS	2.7.13.3	zraS	His Kinase A (phospho-acceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	2.7.13.3	CDS	Sensor protein of zinc sigma-54-dependent two-component system			base_ec	0	0	
phosphoribosylamine--glycine ligase	6.3.4.13	purD	phosphoribosylamine--glycine ligase (EC 6.3.4.13)	6.3.4.13	CDS	Phosphoribosylamine--glycine ligase	6.3.4.13		base_ec	base_ec	base_ec	
transcriptional regulatory protein zraR		zraR	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains		CDS	Response regulator of zinc sigma-54-dependent two-component system			gs-sh	0	0	
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	2.1.2.3	purH	IMP cyclohydrolase (EC 3.5.4.10)/phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	3.5.4.10, 2.1.2.3	CDS	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	3.5.4.10, 2.1.2.3		base_tigr	base_ec-d	base_ec	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
conserved hypothetical protein									base_one HP	base_one HP	base_both miss	
									base_both miss	base_both miss	base_both miss	
putative stress response protein			hypothetical protein		CDS	FIG00639812: hypothetical protein			base_one HP	0	base_one HP	
conserved hypothetical protein			Acetyltransferases	2.3.1.-	CDS	Putative acetyltransferase			base_one HP	base_one HP	0	
homoserine O-succinyltransferase	2.3.1.46	metA	homoserine O-succinyltransferase (EC 2.3.1.46)	2.3.1.46	CDS	Homoserine O-succinyltransferase	2.3.1.46		base_tigr	base_ec	base_ec	
malate synthase A	2.3.3.9	aceB	malate synthase (EC 2.3.3.9)	2.3.3.9	CDS	Malate synthase	2.3.3.9		base_tigr	base_ec	base_ec	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
isocitrate lyase	4.1.3.1	aceA	isocitrate lyase (EC 4.1.3.1)	4.1.3.1	CDS	Isocitrate lyase	4.1.3.1		base_tigr	base_ec	base_ec	
shET2 enterotoxin, N-terminal region family protein			ShET2 enterotoxin, N-terminal region.		CDS	Ankyrin-repeat protein A			lit-s	0	0	
isocitrate dehydrogenase kinase/phosphatase	3.1.3.-	aceK	Isocitrate dehydrogenase kinase/phosphatase	2.7.11.5, 3.1.3.-	CDS	Isocitrate dehydrogenase phosphatase/kinase	2.7.11.5, 3.1.3.-		lit-s	0	0	
acetate operon repressor		iclR	transcriptional regulator, IclR family		CDS	Acetate operon repressor			gs-sh	lit-s	orth	
methionine synthase	2.1.1.13	metH	methionine synthase (B12-dependent) (EC 2.1.1.13)	2.1.1.13	CDS	5-methyltetrahydrofolate--homocysteine methyltransferase	2.1.1.13		base_tigr	base_ec	base_ec	
sodium-dependent inorganic phosphate (Pi) transporter family protein		PNaS	Na/Pi-cotransporter		CDS	Sodium-dependent phosphate transporter			0	0	0	
peptidase E	3.4.13.21	pepE	dipeptidase E (EC:3.4.13.21). Serine peptidase. MEROPS family S51	3.4.13.21	CDS	Alpha-aspartyl dipeptidase Peptidase E	3.4.13.21		base_ec	base_ec	base_ec	
ribosomal large subunit pseudouridine synthase F	5.4.99.21	rluF	ribosomal large subunit pseudouridine synthase F	5.4.99.21,5.4.99.-	CDS	Ribosomal large subunit pseudouridine synthase F	4.2.1.70		base_lit-s	base_ec-d	lit-s	
conserved hypothetical protein			YjbD family (DUF3811).		CDS	FIG00638401: hypothetical protein			base_one HP	base_one HP	0	
aspartate kinase, monofunctional class	2.7.2.4		aspartate kinase (EC 2.7.2.4)	2.7.2.4	CDS	Aspartokinase	2.7.2.4		base_ec	base_ec	base_ec	
glucose-6-phosphate isomerase	5.3.1.9	pgi	glucose-6-phosphate isomerase (EC 5.3.1.9)	5.3.1.9	CDS	Glucose-6-phosphate isomerase	5.3.1.9		base_ec	base_ec	base_ec	
exopolysaccharide production YjbE family protein			Exopolysaccharide production protein YjbE.		CDS	YjbE secreted protein			lit-s	pfam-sh	map	
conserved hypothetical protein			Protein of unknown function (DUF2886).		CDS	YjbF outer membrane lipoprotein			base_one HP	base_one HP	0	
putative protein			Capsule biosynthesis GfcC.		CDS	YjbG polysaccharide synthesis-related protein			0	0	0	
conserved hypothetical protein			Bacterial putative lipoprotein (DUF940).		CDS	YjbH outer membrane lipoprotein			base_one HP	base_one HP	0	
conserved hypothetical protein						FIG00638774: hypothetical protein			base_one HP	base_one HP	base_one miss	
protein psiE		psiE	Predicted membrane protein		CDS	PsiE protein			gs-sh	lit-s	gs-sh	
MFS transporter, sugar porter family protein			MFS transporter, sugar porter (SP) family		CDS	D-xylose proton-symporter XylE			base_tigr	0	0	
binding--dependent transport system inner membrane component family protein			maltooligosaccharide ABC transporter membrane protein		CDS	"Maltose/maltodextrin ABC transporter, permease protein MalG"			0	0	gs-sh	
binding--dependent transport system inner membrane component family protein			maltooligosaccharide ABC transporter membrane protein		CDS	"Maltose/maltodextrin ABC transporter, permease protein MalF"			0	0	gs-sh	
maltose-binding periplasmic protein		malE	maltooligosaccharide-binding protein		CDS	"Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE"			gs-sh	gs-sh	gs-sh	
maltose/maltodextrin import ATP-binding protein MalK	3.6.3.19	malK	maltooligosaccharide ABC transporter ATP-binding protein	3.6.3.19	CDS	Maltose/maltodextrin transport ATP-binding protein MalK	3.6.3.19		base_ec	base_ec	base_ec	
maltoporin		lamB	Maltoporin (phage lambda and maltose receptor)		CDS	"Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein)"			gs-sh	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638409: hypothetical protein			lit-s	base_one HP	base_one HP	
maltose operon periplasmic family protein			Maltose operon periplasmic protein precursor (MalM).		CDS	Maltose operon periplasmic protein MalM			tf_idf	tf_idf	pfam-sh	
conserved hypothetical protein			hypothetical protein		CDS	YjbI protein			lit-s	base_one HP	base_one HP	
pentapeptide repeats family protein			Uncharacterized low-complexity proteins		CDS	YjbI protein			0	0	0	
chorismate--pyruvate lyase	4.1.3.40	ubiC	chorismate lyase (EC 4.1.3.40)	4.1.3.40	CDS	Chorismate--pyruvate lyase	4.1.3.40		base_ec	base_ec	base_ec	
4-hydroxybenzoate polyprenyl transferase	2.5.1.-	ubiA	4-hydroxybenzoate polyprenyltransferase	2.5.1.-,2.5.1.39	CDS	4-hydroxybenzoate polyprenyltransferase	2.5.1.39		base_tigr	gs-sh	base_lit-s	
glycerol-3-phosphate O-acyltransferase	2.3.1.15	plsB	glycerol-3-phosphate acyltransferase (EC 2.3.1.15)	2.3.1.15	CDS	Glycerol-3-phosphate acyltransferase	2.3.1.15		base_tigr	base_ec	base_ec	
diacylglycerol kinase	2.7.1.107	dgkA	diacylglycerol kinase (EC 2.7.1.107)	2.7.1.107	CDS	Diacylglycerol kinase	2.7.1.107		base_ec	base_ec	base_ec	
repressor LexA	3.4.21.88	lexA	SOS-response transcriptional repressor, LexA	3.4.21.88	CDS	SOS-response repressor and protease LexA	3.4.21.88		base_tigr	base_ec	base_ec	
MATE efflux family protein			putative efflux protein, MATE family		CDS	DNA-damage-inducible protein F			base_tigr	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	UPF0337 protein yjbJ			base_one HP	base_one HP	gs-sh	
ferric uptake regulator family protein			zinc uptake regulator, Fur family		CDS	Zinc uptake regulation protein ZUR			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00639441: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF2713).		CDS	FIG00639441: hypothetical protein			base_one HP	base_one HP	lit-s	
tRNA dihydrouridine synthase A family protein	1.-.-.-	dusA	tRNA-U16,U17-dihydrouridine synthase	1.-	CDS	tRNA dihydrouridine synthase A			base_tigr	lit-s	gs-sh	
phage shock protein G		pspG	phage shock protein G		CDS	hypothetical protein			base_lit-s	base_one HP	base_one HP	
quinone oxidoreductase 1	1.6.5.5	qorA	NADPH:quinone reductase and related Zn-dependent oxidoreductases	1.6.5.5	CDS	Quinone oxidoreductase	1.6.5.5		base_ec	base_ec	base_ec	
replicative DNA helicase	3.6.4.12	dnaB	primary replicative DNA helicase	3.6.4.12,3.6.1.-	CDS	Replicative DNA helicase	3.6.1.-		base_tigr	lit-s	tf_idf	
alanine racemase	5.1.1.1	alr	alanine racemase (EC 5.1.1.1)	5.1.1.1	CDS	Alanine racemase ## biosynthetic	5.1.1.1		base_tigr	base_ec	base_ec	
aromatic-amino-acid aminotransferase	2.6.1.57	tyrB	Aspartate/tyrosine/aromatic aminotransferase	2.6.1.57	CDS	Biosynthetic Aromatic amino acid aminotransferase alpha	2.6.1.57		base_ec	base_ec	base_ec	
			hypothetical protein		CDS	FIG00638711: hypothetical protein			base_one HP	base_one miss	base_one HP	
hypothetical protein						FIG00638217: hypothetical protein			base_one HP	base_one HP	base_one miss	
class B acid phosphatase	3.1.3.2	aphA	acid phosphatase (EC 3.1.3.2)	3.1.3.2	CDS	NMN phosphatase; Class B acid phosphatase precursor	3.1.3.5, 3.1.3.2		base_ec	base_ec-d	base_ec-d	
conserved hypothetical protein			secondary thiamine-phosphate synthase enzyme		CDS	FIG004064: hypothetical protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Protein yjbR			base_one HP	base_one HP	gs-sh	
excinuclease ABC subunit A	3.1.25.-	uvrA	Excinuclease ABC subunit A		CDS	Excinuclease ABC subunit A			base_tigr	lit-s	base_lit-s	
single-stranded DNA-binding protein		ssb	single-strand binding protein		CDS	Single-stranded DNA-binding protein			gs-sh	lit-s	map	
putative transmembrane protein			hypothetical protein		CDS	YjcB protein			base_one HP	0	base_one HP	
conserved hypothetical protein			Predicted signal transduction protein containing sensor and EAL domains		CDS	FIG00638940: hypothetical protein			base_one HP	base_one HP	0	
regulatory protein soxS		soxS	transcriptional regulator, AraC family		CDS	Regulatory protein SoxS			gs-sh	lit-s	orth	
redox-sensitive transcriptional activator SoxR		soxR	redox-sensitive transcriptional activator SoxR		CDS	Redox-sensitive transcriptional activator SoxR			base_lit-s	lit-s	lit-s	
conserved hypothetical protein						FIG00638027: hypothetical protein			base_one HP	base_one HP	base_one miss	
putative permease yjcD			Permeases		CDS	Guanine-hypoxanthine permease			gs-sh	0	0	
na+/H+ antiporter			sodium/proton antiporter, CPA1 family (TC 2.A.36)		CDS	"Putative Na(+)/H(+) exchanger protein, CPA1 family precursor"			base_tigr	tf_idf	map	
pentapeptide repeats family protein			Uncharacterized low-complexity proteins		CDS	FIG00638091: hypothetical protein			0	0	0	
cation/acetate symporter ActP		actP	cation/acetate symporter ActP		CDS	Acetate permease ActP (cation/acetate symporter)			base_lit-s	0	0	
inner membrane protein yjcH		yjcH	Predicted membrane protein		CDS	"Putative membrane protein, clustering with ActP"			gs-sh	0	0	
acetate--CoA ligase	6.2.1.1	acs	acetyl-coenzyme A synthetase (EC 6.2.1.1)	6.2.1.1	CDS	Acetyl-coenzyme A synthetase	6.2.1.1		base_tigr	base_ec	base_ec	
cytochrome c-552	1.7.2.2	nrfA	respiratory nitrite reductase (cytochrome; ammonia-forming) precursor (EC 1.7.2.2)	1.7.2.2	CDS	Cytochrome c552 precursor	1.7.2.2		base_ec	base_ec	base_ec	
cytochrome c nitrite reductase, pentaheme subunit	1.7.2.2	nrfB	respiratory nitrite reductase specific menaquinol--cytochrome-c reductase complex subunit NrfB precursor		CDS	Cytochrome c-type protein NrfB precursor			base_tigr	0	0	
cytochrome c nitrite reductase, Fe-S protein	1.7.2.2	nrfC	respiratory nitrite reductase specific menaquinol--cytochrome-c reductase complex Fe-S cluster containing subunit NrfC		CDS	NrfC protein			gs-sh	0	0	
cytochrome c nitrite reductase, NrfD subunit	1.7.2.2	nrfD	respiratory nitrite reductase specific menaquinol--cytochrome-c reductase complex subunit NrfD	1.10.2.-	CDS	NrfD protein			base_tigr	pfam-sh	pfam-sh	
cytochrome c-type biogenesis protein CcmF		ccmF	respiratory nitrite reductase specific cytochrome c biogenesis protein NrfE		CDS	"Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly"			base_tigr	gs-sh	gs-sh	
cytochrome C biogenesis family protein			respiratory nitrite reductase specific cytochrome c biogenesis protein NrfF		CDS	"Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly"			0	0	gs-sh	
TPR repeat family protein			respiratory nitrite reductase specific cytochrome c biogenesis protein NrfG		CDS	"Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly"			0	0	gs-sh	
proton glutamate symport protein		gltP	Na+/H+-dicarboxylate symporters		CDS	Glutamate-aspartate carrier protein			gs-sh	0	0	
conserved hypothetical protein			FOG: TPR repeat, SEL1 subfamily		CDS	Putative exported protein			base_one HP	base_one HP	0	
formate dehydrogenase, alpha subunit	1.2.1.2		formate dehydrogenase alpha subunit (EC 1.2.1.2)	1.2.1.2	CDS	Formate dehydrogenase H @ selenocysteine-containing	1.2.1.2		base_tigr	base_ec	base_ec	
molybdopterin oxidoreductase family protein			Uncharacterized anaerobic dehydrogenase	1.2.1.2	CDS	Formate dehydrogenase H @ selenocysteine-containing	1.2.1.2		0	0	base_ec	
multidrug resistance outer membrane protein mdtP		mdtP	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family		CDS	Outer membrane component of tripartite multidrug resistance system			gs-sh	0	0	
fusaric acid resistance family protein			Predicted membrane protein		CDS	Membrane fusion component of tripartite multidrug resistance system			0	0	0	
efflux transporter, RND family, MFP subunit			efflux pump membrane protein (multidrug resistance protein A)		CDS	Inner membrane component of tripartite multidrug resistance system			0	0	0	
putative membrane protein			hypothetical protein		CDS	FIG00637930: hypothetical protein			base_one HP	0	base_one HP	
metallo-beta-lactamase superfamily protein			Alkyl sulfatase and related hydrolases		CDS	FIG00638848: hypothetical protein			0	0	0	
D-allose kinase	2.7.1.55	alsK	D-allose kinase (EC 2.7.1.55)	2.7.1.55	CDS	D-allose kinase	2.7.1.55		base_ec	base_lit-s	base_ec	
D-allulose-6-phosphate 3-epimerase	5.1.3.-	alsE	D-allulose 6-phosphate 3-epimerase	5.1.3.-	CDS	"D-allulose-6-phosphate 3-epimerase, row_id 1016"	5.1.3.-		gs-sh	0	0	
branched-chain amino acid transport system / permease component family protein			allose ABC transporter membrane protein		CDS	"D-allose ABC transporter, permease component"			0	0	0	
heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	allose ABC transporter ATP-binding protein		CDS	"D-allose ABC transporter, ATPase component"			gs-sh	0	0	
D-allose-binding periplasmic protein		alsB	allose-binding protein		CDS	"D-allose ABC transporter, substrate-binding component"			gs-sh	0	0	
HTH-type transcriptional regulator rpiR		rpiR	transcriptional regulator, RpiR family		CDS	"Transcriptional regulator of D-allose utilization, RpiR family"			gs-sh	gs-sh	gs-sh	
ribose 5-phosphate isomerase B	5.3.1.6	rpiB	ribose-5-phosphate isomerase (EC 5.3.1.6)	5.3.1.6	CDS	D-allose-6-phosphate isomerase / Ribose 5-phosphate isomerase B	5.3.1.-, 5.3.1.6		base_ec	tf_idf	map	
conserved hypothetical protein			hypothetical protein		CDS	FIG00638130: hypothetical protein			lit-s	base_one HP	base_one HP	
phosphonate metabolism protein PhnP		phnP	5-phospho-alpha-D-ribosyl 1,2-cyclic phosphate phosphodiesterase	3.1.4.-	CDS	Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein			base_tigr	gs-sh	gs-sh	
acetyltransferase family protein			Acetyltransferase, GNAT family	2.3.1.-	CDS	PhnO protein			0	0	orth	
phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN		phnN	phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN	2.7.4.23	CDS	ATP-binding protein PhnN; Guanylate kinase	2.7.4.8		base_lit-s	0	base_ec-d	
phosphonate metabolism protein PhnM		phnM	ribophosphonate triphosphate hydrolase	3.-.-.-	CDS	Metal-dependent hydrolase involved in phosphonate metabolism			base_tigr	0	0	
phosphonate C-P lyase system protein PhnL		phnL	methylphosphonate degradation complex, subunit phnL		CDS	Phosphonates transport ATP-binding protein PhnL			base_tigr	gs-sh	gs-sh	
phosphonate C-P lyase system protein PhnK		phnK	phosphonate C-P lyase system protein PhnK		CDS	Phosphonates transport ATP-binding protein PhnK			base_lit-s	orth	orth	
protein phnJ		phnJ	carbon-phosphorous lyase	4.-.-.-	CDS	PhnJ protein			gs-sh	lit-s	map	
bacterial phosphonate metabolism family protein			methylphosphonate degradation complex, subunit phnI		CDS	PhnI protein			gs-sh	0	0	
phosphonate C-P lyase system protein PhnH		phnH	methylphosphonate degradation complex, subunit phnH		CDS	PhnH protein			base_tigr	pfam-sh	gs-sh	
phosphonate C-P lyase system protein PhnG		phnG	methylphosphonate degradation complex, subunit phnG		CDS	PhnG protein			base_tigr	pfam-sh	map	
phosphonate metabolism transcriptional regulator PhnF		phnF	transcriptional regulator, GntR family		CDS	Transcriptional regulator PhnF			base_tigr	gs-sh	gs-sh	
binding--dependent transport system inner membrane component family protein			ABC-type phosphate/phosphonate transport system, permease component		CDS	Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)			0	0	gs-sh	
putative phnE, subunit of alkylphosphonate ABC transporter						Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)			base_one miss	gs-sh	base_one miss	
phosphonate ABC transporter, periplasmic phosphonate binding protein		phnD	phosphonate ABC transporter, periplasmic phosphonate binding protein		CDS	Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)			base_lit-s	gs-sh	map	
phosphonate ABC transporter, ATP-binding protein	3.6.3.28	phnC	phosphonate ABC transporter, ATP-binding protein	3.6.3.28	CDS	Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)			base_lit-s	lit-s	lit-s	
protein phnB		phnB	Uncharacterized protein conserved in bacteria		CDS	PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein			gs-sh	0	0	
phnA family protein			alkylphosphonate utilization operon protein PhnA	3.11.1.2	CDS	Alkylphosphonate utilization operon protein PhnA			gs-sh	tf_idf	lit-s	
50S ribosome-binding GTPase family protein			Dynamin family.		CDS	Putative vimentin			0	0	0	
yjcZ-like family protein			YjcZ-like protein.		CDS	Methyl-accepting chemotaxis protein			lit-s	0	0	
proline/betaine transporter		proP	metabolite-proton symporter		CDS	L-Proline/Glycine betaine transporter ProP			gs-sh	gs-sh	gs-sh	
sensor protein BasS	2.7.13.3	basS	Signal transduction histidine kinase	2.7.13.3	CDS	Sensor protein basS/pmrB	2.7.3.-		base_ec	gs-sh	gs-sh	
transcriptional regulatory protein BasR		basR	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	Transcriptional regulatory protein basR/pmrA			gs-sh	gs-sh	gs-sh	
phosphoethanolamine transferase eptA	2.7.-.-	eptA	Predicted membrane-associated, metal-dependent hydrolase		CDS	Phosphoethanolamine transferase EptA specific for the 1 phosphate group of core-lipid A			gs-sh	0	0	
arginine/agmatine antiporter		adiC	arginine:agmatine antiporter, APA family (TC 2.A.3.2.5)		CDS	Arginine/agmatine antiporter			gs-sh	lit-s	map	
HTH-type transcriptional regulator AdiY		adiY	transcriptional regulator, AraC family		CDS	Transcriptional regulator of catabolic arginine decarboxylase (adiA)			gs-sh	gs-sh	gs-sh	
biodegradative arginine decarboxylase	4.1.1.19	adiA	Arginine/lysine/ornithine decarboxylases	4.1.1.19	CDS	"Arginine decarboxylase, catabolic"	4.1.1.19		base_ec	base_ec	base_ec	
melibiose operon regulatory protein		melR	transcriptional regulator, AraC family		CDS	Melibiose operon regulatory protein			gs-sh	lit-s	orth	
alpha-galactosidase	3.2.1.22	melA	alpha-galactosidase (EC:3.2.1.22)	3.2.1.22	CDS	Alpha-galactosidase	3.2.1.22		base_ec	base_ec	base_ec	
melibiose carrier protein		melB	sugar (Glycoside-Pentoside-Hexuronide) transporter		CDS	"Melibiose carrier protein, Na+/melibiose symporter"			gs-sh	0	0	
inner membrane protein yjdF		yjdF	Predicted membrane protein		CDS	Inner membrane protein yjdF			gs-sh	lit-s	gs-sh	
fumarate hydratase class I, anaerobic	4.2.1.2	fumB	fumarase, class I, homodimeric (EC 4.2.1.2)	4.2.1.2	CDS	"Fumarate hydratase class I, anaerobic"	4.2.1.2		base_ec	base_ec	base_ec	
anaerobic C4-dicarboxylate transporter DcuB		dcuB	anaerobic c4-dicarboxylate membrane transporter family protein		CDS	C4-dicarboxylate transporter DcuB			gs-sh	gs-sh	tf_idf	
transcriptional regulatory protein dcuR		dcuR	Response regulator of citrate/malate metabolism		CDS	Fumarate respiration transcriptional regulator DcuR			gs-sh	0	0	
sensor histidine kinase DcuS	2.7.13.3	dcuS	Signal transduction histidine kinase regulating citrate/malate metabolism	2.7.13.3	CDS	Fumarate respiration sensor kinase protein DcuS			base_ec	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00638676: hypothetical protein			base_one HP	base_one HP	lit-s	
acetyltransferase family protein			Predicted acetyltransferase		CDS	hypothetical protein YjdJ			lit-s	orth	map	
conserved hypothetical protein			Protein of unknown function (DUF2622).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF2566).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
lysine--tRNA ligase	6.1.1.6	lysS	lysyl-tRNA synthetase, class II (EC 6.1.1.6)	6.1.1.6	CDS	Lysyl-tRNA synthetase (class II)	6.1.1.6		base_tigr	base_ec	base_ec	
dipeptide permease D		dtpD	amino acid/peptide transporter (Peptide:H+ symporter), bacterial		CDS	Di/tripeptide permease YjdL			gs-sh	0	0	
lysine decarboxylase, inducible	4.1.1.18	cadA	L-lysine decarboxylase (EC 4.1.1.18)	4.1.1.18	CDS	"Lysine decarboxylase, inducible"	4.1.1.18		base_ec	base_ec	base_ec	
transporter, basic amino acid/polyamine antiporter family protein			cadaverine:lysine antiporter, APA family (TC 2.A.3.2.2)		CDS	Lysine/cadaverine antiporter membrane protein CadB			base_tigr	0	0	
transcriptional activator CadC		cadC	lysine decarboxylase transcriptional regulator, CadC		CDS	Transcriptional activator of cad operon			gs-sh	orth	map	
HTH-type transcriptional regulator yjdC		yjdC	transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
thiol:disulfide interchange protein DsbD	1.8.1.8	dsbD	Thiol:disulfide interchange protein	1.8.1.8	CDS	"Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase"	1.8.1.8		base_ec	base_ec	base_ec	
divalent-cation tolerance protein CutA		cutA	Uncharacterized protein involved in tolerance to divalent cations		CDS	Periplasmic divalent cation tolerance protein CutA			gs-sh	orth	tf_idf	
anaerobic C4-dicarboxylate transporter DcuA		dcuA	anaerobic c4-dicarboxylate membrane transporter family protein		CDS	C4-dicarboxylate transporter DcuA			gs-sh	0	0	
aspartate ammonia-lyase	4.3.1.1	aspA	aspartate ammonia-lyase	4.3.1.1	CDS	Aspartate ammonia-lyase	4.3.1.1		base_lit-s	base_ec	base_ec	
conserved hypothetical protein			Protein affecting phage T7 exclusion by the F plasmid		CDS	FxsA protein			base_one HP	base_one HP	orth	
inner membrane protein yjeH		yjeH	amino acid exporter, AAE family (TC 2.A.3.13)		CDS	Putative permease			gs-sh	gs-sh	map	
10 kDa chaperonin		groS	Co-chaperonin GroES (HSP10)		CDS	Heat shock protein 60 family co-chaperone GroES			gs-sh	0	0	
chaperonin GroL		groL	chaperonin GroL		CDS	Heat shock protein 60 family chaperone GroEL			base_lit-s	0	0	
conserved hypothetical protein			Domain of unknown function (DUF4156).		CDS	probable membrane protein yjeI			base_one HP	base_one HP	gs-sh	
putative predicted protein			hypothetical protein		CDS	FIG00733146: hypothetical protein			base_one HP	lit-s	base_one HP	
kamA family protein			L-lysine 2,3-aminomutase	5.4.3.2	CDS	"Lysyl-lysine 2,3-aminomutase"			gs-sh	0	0	
translation elongation factor P		efp	translation elongation factor P (EF-P)		CDS	Translation elongation factor P			base_tigr	lit-s	tf_idf	
outer membrane lipoprotein blc		blc	Bacterial lipocalin		CDS	Outer membrane lipoprotein Blc			gs-sh	lit-s	orth	
quaternary ammonium compound-resistance protein sugE		sugE	Membrane transporters of cations and cationic drugs		CDS	Quaternary ammonium compound-resistance protein SugE			gs-sh	lit-s	map	
beta-lactamase	3.5.2.6	ampC	Beta-lactamase class C and other penicillin binding proteins	3.5.2.6	CDS	Beta-lactamase	3.5.2.6		base_ec	base_ec	base_ec	
fumarate reductase subunit D		frdD	succinate dehydrogenase subunit D	1.3.5.1	CDS	Fumarate reductase subunit D			gs-sh	lit-s	map	
fumarate reductase subunit C		frdC	Fumarate reductase subunit C		CDS	Fumarate reductase subunit C			lit-s	lit-s	base_lit-s	
fumarate reductase iron-sulfur subunit	1.3.99.1	frdB	succinate dehydrogenase subunit B	1.3.99.1,1.3.5.1	CDS	Succinate dehydrogenase iron-sulfur protein	1.3.99.1		base_ec-d	base_ec	base_ec-d	
fumarate reductase, flavoprotein subunit	1.3.99.1	frdA	succinate dehydrogenase subunit A	1.3.99.1,1.3.5.1	CDS	Succinate dehydrogenase flavoprotein subunit	1.3.99.1		base_ec-d	base_ec	base_ec-d	
EF-P lysine aminoacylase GenX			EF-P lysine aminoacylase GenX	6.1.1.6	CDS	Translation elongation factor P Lys34:lysine transferase			base_lit-s	0	0	
inner membrane transporter yjeM		yjeM	amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	Putative amino acid permease			gs-sh	gs-sh	map	
conserved hypothetical protein			hypothetical protein		CDS	FIG00639484: hypothetical protein			lit-s	base_one HP	base_one HP	
inner membrane protein yjeO		yjeO	Protein of unknown function (DUF2645).		CDS	FIG00639836: hypothetical protein			gs-sh	0	lit-s	
mechanosensitive ion channel family protein			Small-conductance mechanosensitive channel		CDS	Potassium efflux system KefA protein / Small-conductance mechanosensitive channel			0	0	0	
phosphatidylserine decarboxylase	4.1.1.65	psd	phosphatidylserine decarboxylase precursor	4.1.1.65	CDS	Phosphatidylserine decarboxylase	4.1.1.65		base_tigr	base_ec	base_ec	
ribosome small subunit-dependent GTPase A	3.6.-.-	rsgA	ribosome small subunit-dependent GTPase A	3.6.1.-	CDS	Ribosome small subunit-stimulated GTPase EngC			base_lit-s	0	0	
oligoribonuclease	3.1.-.-	orn	Oligoribonuclease (3'->5' exoribonuclease)	3.1.-	CDS	3'-to-5' oligoribonuclease (orn)			gs-sh	gs-sh	gs-sh	
putative iron-sulfur cluster-binding protein			iron-sulfur cluster binding protein, putative		CDS	Epoxyqueuosine (oQ) reductase QueG			base_tigr	0	0	
conserved hypothetical protein			yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region		CDS	NAD(P)HX epimerase / NAD(P)HX dehydratase			base_one HP	base_one HP	0	
conserved hypothetical protein			ATPase, YjeE family		CDS	"ATPase YjeE, predicted to have essential role in cell wall biosynthesis"			base_one HP	base_one HP	0	
N-acetylmuramoyl-L-alanine amidase AmiB	3.5.1.28	amiB	N-acetylmuramoyl-L-alanine amidase	3.5.1.28	CDS	N-acetylmuramoyl-L-alanine amidase	3.5.1.28		base_ec	base_ec	base_lit-s	
DNA mismatch repair protein mutL		mutL	DNA mismatch repair protein MutL		CDS	DNA mismatch repair protein MutL			lit-s	lit-s	base_lit-s	
tRNA dimethylallyltransferase	2.5.1.75	miaA	tRNA dimethylallyltransferase	2.5.1.75	CDS	tRNA dimethylallyltransferase	2.5.1.75		base_lit-s	base_lit-s	base_lit-s	
RNA chaperone Hfq		hfq	RNA-binding protein Hfq		CDS	RNA-binding protein Hfq			base_tigr	map	base_lit-s	
GTP-binding protein HflX		hflX	GTP-binding protein HflX	3.1.5.-	CDS	GTP-binding protein HflX			base_lit-s	base_lit-s	base_lit-s	
hflK protein		hflK	protease FtsH subunit HflK	3.4.-	CDS	HflK protein			base_tigr	lit-s	pfam-sh	
hflC protein		hflC	protease FtsH subunit HflC	3.4.-	CDS	HflC protein			base_tigr	lit-s	gs-sh	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Putative inner membrane protein YjeT (clustered with HflC)			base_one HP	base_one HP	0	
adenylosuccinate synthase	6.3.4.4	purA	Adenylosuccinate synthetase (EC 6.3.4.4)	6.3.4.4	CDS	Adenylosuccinate synthetase	6.3.4.4		base_tigr	base_ec	base_ec	
HTH-type transcriptional repressor nsrR		nsrR	transcriptional regulator, BadM/Rrf2 family		CDS	Nitrite-sensitive transcriptional repressor NsrR			gs-sh	0	0	
ribonuclease R	3.1.-.-	rnr	RNAse R	3.1.-,3.1.-.-	CDS	3'-to-5' exoribonuclease RNase R			gs-sh	0	0	
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB	2.1.1.-	rlmB	23S rRNA Gm-2251 2'-O-methyltransferase (EC 2.1.1.185)	2.1.1.185	CDS	23S rRNA (guanosine-2'-O-) -methyltransferase rlmB	2.1.1.-		gs-sh	lit-s	gs-sh	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
pspA/IM30 family protein			phage shock protein A (PspA) family protein		CDS	PspA/IM30 family protein			gs-sh	lit-s	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF2491).		CDS	FIG00638518: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Predicted membrane protein		CDS	Membrane protein with DUF350 domain			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Predicted integral membrane protein		CDS	FIG00637977: hypothetical protein			base_one HP	base_one HP	0	
glutathionylspermidine synthase preATP-grasp family protein			Glutathionylspermidine synthase		CDS	"Similarity with glutathionylspermidine synthase, group 1"	6.3.1.8		0	0	0	
putative acyl-CoA dehydrogenase AidB			Acyl-CoA dehydrogenases		CDS	Acyl-CoA dehydrogenase	1.3.99.3		0	tf_idf	0	
conserved hypothetical protein			Protein of unknown function (DUF1471).		CDS	Putative uncharacterized protein YjfN			base_one HP	base_one HP	0	
conserved hypothetical protein			Protein of unknown function (DUF1471).		CDS	Putative exported protein			base_one HP	base_one HP	0	
HTH-type transcriptional regulator ulaR		ulaR	transcriptional regulator, DeoR family		CDS	"Ascorbate utilization transcriptional regulator UlaR, HTH-type"			gs-sh	0	0	
esterase yjfP	3.1.-.-	yjfP	Hydrolases of the alpha/beta superfamily		CDS	YjfP protein			gs-sh	0	0	
metal-dependent hydrolase			L-ascorbate 6-phosphate lactonase (EC 3.1.1.-)	3.1.1.-	CDS	Probable L-ascorbate-6-phosphate lactonase UlaG (L-ascorbate utilization protein G)	3.1.1.-		0	0	0	
ascorbate-specific permease IIC component ulaA		ulaA	PTS system ascorbate-specific IIC component, L-Asc family (TC 4.A.7.1.1)		CDS	"Ascorbate-specific PTS system, EIIC component"			gs-sh	0	0	
ascorbate-specific phosphotransferase enzyme IIB component	2.7.1.69	ulaB	PTS system ascorbate-specific IIB component, L-Asc family (TC 4.A.7.1.1)	2.7.1.69	CDS	"Ascorbate-specific PTS system, EIIB component"	2.7.1.69		base_ec	base_ec	base_ec	
ascorbate-specific phosphotransferase enzyme IIA component	2.7.1.-	ulaC	PTS system ascorbate-specific IIA component, L-Asc family (TC 4.A.7.1.1)	2.7.1.69	CDS	"Ascorbate-specific PTS system, EIIA component"	2.7.1.-		gs-sh	0	0	
3-keto-L-gulonate-6-phosphate decarboxylase ulaD	4.1.1.85	ulaD	3-keto-L-gulonate 6-phosphate decarboxylase (EC 4.1.1.85)	4.1.1.85	CDS	3-keto-L-gulonate-6-phosphate decarboxylase UlaD (L-ascorbate utilization protein D)	4.1.1.85		base_ec	base_ec	base_ec	
L-ribulose-5-phosphate 3-epimerase ulaE	5.1.3.22	ulaE	L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.22)	5.1.3.22	CDS	L-ribulose-5-phosphate 3-epimerase UlaE (L-ascorbate utilization protein E)	5.1.3.22		base_ec	base_ec	base_ec	
L-ribulose-5-phosphate 4-epimerase UlaF	5.1.3.4	ulaF	L-ribulose 5-phosphate 4-epimerase (EC 5.1.3.4)	5.1.3.4	CDS	L-ribulose-5-phosphate 4-epimerase UlaF (L-ascorbate utilization protein F)	5.1.3.4		base_ec	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF1471).		CDS	UPF0379 protein yjfY precursor			base_one HP	base_one HP	gs-sh	
ribosomal protein S6		rpsF	SSU ribosomal protein S6P		CDS	SSU ribosomal protein S6p			base_tigr	map	lit-s	
			restart primosome assembly protein PriB		CDS				base_one miss	base_both miss	base_one miss	
ribosomal protein S18		rpsR	SSU ribosomal protein S18P		CDS	"SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent"			base_tigr	0	0	
ribosomal protein L9		rplI	LSU ribosomal protein L9P		CDS	LSU ribosomal protein L9p			base_tigr	map	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF2686).		CDS	Uncharacterized protein yjfZ			base_one HP	base_one HP	gs-sh	
opacity-associated A N-terminal motif family protein			Cell envelope opacity-associated protein A		CDS	Putative cell envelope opacity-associated protein A			0	0	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase	5.2.1.8	fklB	FKBP-type peptidyl-prolyl cis-trans isomerases 1	5.2.1.8	CDS	FKBP-type peptidyl-prolyl cis-trans isomerase FklB	5.2.1.8		base_ec	base_ec	base_ec	
D-serine/D-alanine/glycine transporter		cycA	D-serine/D-alanine/glycine:proton symporter, AAT family (TC 2.A.3.1.7)		CDS	D-serine/D-alanine/glycine transporter			gs-sh	base_lit-s	map	
iron-sulfur cluster repair di-iron protein		ric	iron-sulfur cluster repair di-iron protein		CDS	Nitric oxide-dependent regulator DnrN or NorA			base_lit-s	0	0	
inner membrane protein ytfF		ytfF	Permeases of the drug/metabolite transporter (DMT) superfamily		CDS	Putative membrane protein			gs-sh	orth	orth	
quinone oxidoreductase 2	1.6.5.2	qorB	Predicted nucleoside-diphosphate-sugar epimerases		CDS	NADPH:quinone oxidoreductase 2			gs-sh	0	0	
putative transcriptional regulator			transcriptional regulator, HxlR family		CDS	Redox-sensing transcriptional regulator QorR			0	0	0	
2',3'-cyclic-nucleotide 2'-phosphodiesterase	3.1.4.16	cpdB	2',3'-cyclic-nucleotide 2'-phosphodiesterase	3.1.4.16	CDS	"2',3'-cyclic-nucleotide 2'-phosphodiesterase"	3.1.4.16		base_lit-s	base_ec	base_ec	
3'(2'),5'-bisphosphate nucleotidase	3.1.3.7	cysQ	3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)	3.1.3.7	CDS	"3'(2'),5'-bisphosphate nucleotidase"	3.1.3.7		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00639934: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			conserved hypothetical protein YtfJ-family, TIGR01626		CDS	Protein ytfJ precursor			base_one HP	base_one HP	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF1107).		CDS	FIG00614015: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Hemolysins and related proteins containing CBS domains		CDS	Putative membrane protein			base_one HP	base_one HP	0	
peptide methionine sulfoxide reductase MsrA	1.8.4.11	msrA	methionine-S-sulfoxide reductase	1.8.4.11	CDS	Peptide methionine sulfoxide reductase MsrA	1.8.4.11		base_ec	base_ec	base_ec	
surface antigen family protein			autotransporter secretion outer membrane protein TamA		CDS	Uncharacterized protein YtfM precursor			0	0	0	
conserved hypothetical protein			autotransporter secretion inner membrane protein TamB		CDS	Uncharacterized protein YtfN			base_one HP	base_one HP	0	
AIG2-like family protein			Uncharacterized conserved protein		CDS	UPF0131 protein YtfP			0	0	0	
antitoxin ChpS		chpS	Growth regulator		CDS	Programmed cell death antitoxin ChpS			gs-sh	0	0	
mRNA interferase ChpB	3.1.-.-	chpB	Growth inhibitor	3.1.-	CDS	Programmed cell death toxin ChpB			gs-sh	0	0	
inorganic pyrophosphatase	3.6.1.1	ppa	Inorganic pyrophosphatase	3.6.1.1	CDS	Inorganic pyrophosphatase	3.6.1.1		base_ec	base_ec	base_lit-s	
ABC transporter periplasmic-binding protein ytfQ		ytfQ	monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)		CDS	"Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor"			gs-sh	0	0	
ABC transporter family protein			monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-)	3.6.3.17	CDS	"Putative sugar ABC transport system, ATP-binding protein YtfR"	3.6.3.17		0	0	base_ec	
branched-chain amino acid transport system / permease component family protein			monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)		CDS	"Putative sugar ABC transport system, permease protein YtfT"			0	0	0	
branched-chain amino acid transport system / permease component family protein			monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)		CDS	"Putative sugar ABC transport system, permease protein YjfF"			0	0	0	
fructose-1,6-bisphosphatase class 1	3.1.3.11	fbp	D-fructose 1,6-bisphosphatase (EC 3.1.3.11)	3.1.3.11	CDS	"Fructose-1,6-bisphosphatase, type I"	3.1.3.11		base_ec	base_ec	base_ec	
L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase		mpl	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	6.3.2.-	CDS	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	6.3.2.-		base_tigr	map	base_lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG138315: Putative alpha helix protein			base_one HP	base_one HP	0	
protein pmbA		pmbA	microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62		CDS	"TldE protein, part of TldE/TldD proteolytic complex"			gs-sh	gs-sh	gs-sh	
soluble cytochrome b562		cybC	Soluble cytochrome b562		CDS	Soluble cytochrome b562			lit-s	lit-s	base_lit-s	
anaerobic ribonucleoside-triphosphate reductase activating protein	1.97.1.4	nrdG	ribonucleoside-triphosphate reductase class III activase subunit	1.97.1.4,1.17.4.2	CDS	"Ribonucleotide reductase of class III (anaerobic), activating protein"	1.97.1.4		base_tigr	base_ec	base_ec-d	
anaerobic ribonucleoside-triphosphate reductase	1.17.4.2	nrdD	ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2)	1.17.4.2	CDS	"Ribonucleotide reductase of class III (anaerobic), large subunit"	1.17.4.2		base_tigr	base_ec	base_ec	
alpha,alpha-phosphotrehalase	3.2.1.93	treC	trehalose-6-phosphate hydrolase (EC 3.2.1.93)	3.2.1.93	CDS	Trehalose-6-phosphate hydrolase	3.2.1.93		base_tigr	base_ec	base_ec	
PTS system trehalose-specific EIIBC component	2.7.1.69	treB	PTS system trehalose-specific IIB component, Glc family (TC 4.A.1.2.4)/PTS system trehalose-specific IIC component, Glc family (TC 4.A.1.2.4)		CDS	"PTS system, trehalose-specific IIB component / PTS system, trehalose-specific IIC component"	2.7.1.69, 2.7.1.69		gs-sh	base_ec-d	0	
trehalose operon repressor		treR	transcriptional regulator, LacI family		CDS	Trehalose operon transcriptional repressor			base_tigr	gs-sh	map	
magnesium-translocating P-type ATPase	3.6.3.2	mgtA	magnesium-translocating P-type ATPase	3.6.3.2	CDS	"Mg(2+) transport ATPase, P-type"	3.6.3.2		base_lit-s	base_ec	base_ec	
endoribonuclease L-PSP family protein			endoribonuclease L-PSP, putative		CDS	"Protein YjgF, putative endoribonuclease L-PSP"			lit-s	pfam-sh	pfam-sh	
aspartate carbamoyltransferase, regulatory subunit	2.1.3.2	pyrI	aspartate carbamoyltransferase, regulatory subunit		CDS	Aspartate carbamoyltransferase regulatory chain (PyrI)			base_lit-s	gs-sh	gs-sh	
aspartate carbamoyltransferase	2.1.3.2	pyrB	aspartate carbamoyltransferase (EC 2.1.3.2)	2.1.3.2	CDS	Aspartate carbamoyltransferase	2.1.3.2		base_tigr	base_ec	base_ec	
endoribonuclease L-PSP family protein			Putative translation initiation inhibitor, yjgF family		CDS	UPF0076 protein YjgH			gs-sh	orth	map	
conserved hypothetical protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	Uncharacterized oxidoreductase YjgI	1.-.-.-		base_one HP	base_one HP	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Putative HTH-type transcriptional regulator YjgJ, TetR family"			gs-sh	gs-sh	pfam-sh	
conserved hypothetical protein			uncharacterized protein, YhcH/YjgK/YiaL family		CDS	"Protein YjgK, linked to biofilm formation"			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	"Protein YjgL, putative CCAAT-box DNA binding protein subunit B"			lit-s	base_one HP	base_one HP	
ornithine carbamoyltransferase	2.1.3.3	argF	ornithine carbamoyltransferase (EC 2.1.3.3)	2.1.3.3	CDS	Ornithine carbamoyltransferase	2.1.3.3		base_tigr	base_ec	base_ec	
regulator of ribonuclease activity B		rraB	Uncharacterized protein conserved in bacteria		CDS	Ribonuclease E inhibitor RraB			gs-sh	0	0	
acetyltransferase family protein			N-acetylglutamate synthase and related acetyltransferases	2.3.1.-	CDS	Uncharacterized acetyltransferase YjgM	2.3.1.-		0	0	0	
inner membrane protein yjgN		yjgN	Predicted membrane protein		CDS	Inner membrane protein YjgN			gs-sh	lit-s	orth	
valine--tRNA ligase	6.1.1.9	valS	valyl-tRNA synthetase (EC 6.1.1.9)	6.1.1.9	CDS	Valyl-tRNA synthetase	6.1.1.9		base_tigr	base_ec	base_ec	
DNA polymerase III subunit chi	2.7.7.7	holC	DNA polymerase III, chi subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III chi subunit	2.7.7.7		base_ec	base_ec	base_ec	
cytosol aminopeptidase	3.4.11.10	pepA	aminopeptidase A. Metallo peptidase. MEROPS family M17	3.4.11.1	CDS	Cytosol aminopeptidase PepA	3.4.11.1		base_ec-d	base_ec-d	base_ec	
lipopolysaccharide export system permease protein lptF		lptF	Predicted permeases		CDS	FIG000988: Predicted permease			gs-sh	0	0	
lipopolysaccharide export system permease protein lptG		lptG	Predicted permeases		CDS	FIG000906: Predicted Permease			gs-sh	gs-sh	map	
conserved hypothetical protein			Predicted ATPase		CDS	FIG00638157: hypothetical protein			base_one HP	base_one HP	0	
HTH-type transcriptional regulator idnR		idnR	transcriptional regulator, LacI family		CDS	Positive regulator of L-idonate catabolism			gs-sh	0	0	
gnt-II system L-idonate transporter		idnT	L-idonate permease (TC 2.A.8.1.2)		CDS	"L-idonate, D-gluconate, 5-keto-D-gluconate transporter"			gs-sh	0	0	
gluconate 5-dehydrogenase	1.1.1.69	gno	5-keto-D-gluconate 5-reductase (EC 1.1.1.69)	1.1.1.69	CDS	5-keto-D-gluconate 5-reductase	1.1.1.69		base_ec	base_ec	base_ec	
L-idonate 5-dehydrogenase	1.1.1.264	idnD	L-idonate 5-dehydrogenase (EC 1.1.1.264)	1.1.1.264	CDS	L-idonate 5-dehydrogenase	1.1.1.264		base_ec	base_lit-s	base_ec	
carbohydrate kinase, thermoresistant glucokinase family protein	2.7.1.-		gluconate kinase, SKI family (EC 2.7.1.12)	2.7.1.12	CDS	Gluconokinase	2.7.1.12		base_tigr	map	base_ec	
zinc-binding dehydrogenase family protein			Zn-dependent alcohol dehydrogenases	1.-	CDS	Alcohol dehydrogenase	1.1.1.1		0	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
phage integrase family protein			Integrase		CDS	Mobile element protein			orth	0	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
conserved hypothetical protein						Dca			base_one HP	base_one HP	base_one miss	
sulfatase family protein			Predicted membrane-associated, metal-dependent hydrolase		CDS	hypothetical protein			0	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	Dca			lit-s	base_one HP	base_one HP	
transposase DDE domain protein			transposase, IS4 family		CDS	Mobile element protein			0	0	0	
sugar (and other) transporter family protein			Arabinose efflux permease		CDS	Sialic acid transporter (permease) NanT			0	0	0	
oxidoreductase , NAD-binding Rossmann fold family protein			Predicted dehydrogenases and related proteins		CDS	Putative oxidoreductase			0	0	0	
putative yjhD			hypothetical protein		CDS	KpLE2 phage-like element; predicted protein (pseudogene)			base_one HP	0	base_one HP	
putative membrane protein						Permeases of the major facilitator superfamily			base_one miss	0	base_one miss	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives, IS30 family		CDS	Mobile element protein			0	0	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
			Transposase and inactivated derivatives		CDS				base_one miss	base_both miss	base_one miss	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
ABC transporter family protein			ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components	3.6.3.34	CDS	Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1)			0	0	0	
conserved hypothetical protein						FIG00638432: hypothetical protein			base_one HP	base_one HP	base_one miss	
fe(3+) dicitrate transport system permease protein fecD		fecD	ABC-type Fe3+-siderophore transport system, permease component		CDS	Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1)			gs-sh	gs-sh	gs-sh	
fecCD transport family protein			ABC-type Fe3+-siderophore transport system, permease component		CDS	Iron(III) dicitrate transport system permease protein FecC (TC 3.A.1.14.1)			0	0	0	
periplasmic binding family protein			ABC-type Fe3+-citrate transport system, periplasmic component		CDS	"Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1)"			0	0	gs-sh	
fe(3+) dicitrate transport protein fecA		fecA	TonB-dependent siderophore receptor		CDS	Iron(III) dicitrate transport protein FecA			gs-sh	gs-sh	gs-sh	
fecR family protein			FecR family protein		CDS	Iron(III) dicitrate transmembrane sensor protein FecR			lit-s	map	pfam-sh	
putative RNA polymerase sigma factor fecI			DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog		CDS	RNA polymerase sigma factor FecI			gs-sh	lit-s	map	
putative transposase						Mobile element protein			base_one miss	0	base_one miss	
putative transposase			Transposase and inactivated derivatives, IS1 family		CDS	Mobile element protein			0	0	0	
helix-turn-helix family protein			Transcriptional regulator, contains sigma factor-related N-terminal domain		CDS	Erythritol transcriptional regulator EryD			0	0	0	
H+ symporter family protein			gluconate permease GntP (TC 2.A.8.1.1)		CDS	"Gluconate permease, Bsu4004 homolog"			base_tigr	0	0	
conserved hypothetical protein			putative dehydratase, YjhG/YagF family		CDS	Dihydroxy-acid dehydratase	4.2.1.9		base_one HP	base_one HP	0	
conserved hypothetical protein			Dihydrodipicolinate synthase/N-acetylneuraminate lyase	4.2.1.52	CDS	Dihydrodipicolinate synthase homolog	4.2.1.52		base_one HP	base_one HP	base_ec	
bacterial transcriptional regulator family protein			Transcriptional regulator		CDS	"Transcriptional regulator, IclR family"			lit-s	gs-sh	gs-sh	
putative sgc region transcriptional regulator			transcriptional regulator, DeoR family		CDS	Putative regulatory protein			orth	orth	orth	
ribulose-phosphate 3 epimerase family protein			ribulose-5-phosphate 3-epimerase	5.1.3.-,5.1.3.1	CDS	Ribulose-phosphate 3-epimerase	5.1.3.1		0	0	0	
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein			PTS system unknown substrate IIA component, Gat family (TC 4.A.5.1.3)	2.7.1.69	CDS	"PTS system, IIA component"			0	0	0	
putative sgc region protein SgcQ			membrane complex biogenesis protein, BtpA family		CDS	Putative nucleoside triphosphatase			0	orth	0	
galactitol permease IIC component		gatC	PTS system unknown substrate IIC component, Gat family (TC 4.A.5.1.3)		CDS	"PTS system, galactitol-specific IIC component"	2.7.1.69		gs-sh	0	0	
PTS system, Lactose/Cellobiose specific IIB subunit			PTS system unknown substrate IIB component, Gat family (TC 4.A.5.1.3)	2.7.1.69	CDS	Putative phosphotransferase enzyme			0	orth	0	
M42 glutamyl aminopeptidase family protein			Cellulase M and related proteins		CDS	Putative sgc region protein sgcX			0	0	gs-sh	
conserved hypothetical protein			Methyltransferase domain.		CDS	3-demethylubiquinone-9 3-methyltransferase	2.1.1.64		base_one HP	base_one HP	0	
acetyltransferase family protein			Predicted acetyltransferase		CDS	Acetyltransferase	2.3.1.-		lit-s	lit-s	lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00640575: hypothetical protein			base_one HP	base_one HP	lit-s	
dNA helicase, superfamily I						Putative superfamily I DNA helicases			base_one miss	0	base_one miss	
phospholipase D family protein			PLD-like domain./AAA domain.		CDS	Putative superfamily I DNA helicases			0	0	0	
conserved hypothetical protein			Domain of unknown function (DUF303).		CDS	FIG00639826: hypothetical protein			base_one HP	base_one HP	lit-s	
N-acetylneuraminate epimerase	5.1.3.n1	nanM	mutatrotase, YjhT family		CDS	"Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase"			gs-sh	0	0	
putative N-acetylneuraminic acid outer membrane channel protein NanC			N-acetylneuraminate-specific porin (TC 1.B.35.2.1)		CDS	N-acetylneuraminic acid outer membrane channel protein NanC			0	lit-s	0	
phage integrase family protein			Site-specific recombinase XerD		CDS	type 1 fimbriae regulatory protein FimB			0	0	0	
phage integrase family protein			Site-specific recombinase XerD		CDS	type 1 fimbriae regulatory protein FimE			0	0	0	
type-1 fimbrial protein, A chain		fimA	P pilus assembly protein, pilin FimA		CDS	type 1 fimbriae major subunit FimA			gs-sh	orth	map	
fimbrial family protein			P pilus assembly protein, pilin FimA		CDS	"type 1 fimbriae protein FimI, unknown function"			0	0	0	
chaperone protein fimC		fimC	P pilus assembly protein, chaperone PapD		CDS	chaperone FimC			gs-sh	lit-s	map	
outer membrane usher protein fimD		fimD	P pilus assembly protein, porin PapC		CDS	type 1 fimbriae anchoring protein FimD			gs-sh	gs-sh	gs-sh	
protein fimF		fimF	P pilus assembly protein, pilin FimA		CDS	type 1 fimbrae adaptor subunit FimF			gs-sh	0	0	
protein fimG		fimG	P pilus assembly protein, pilin FimA		CDS	type 1 fimbrae adaptor subunit FimG			gs-sh	0	0	
protein fimH		fimH	FimH, mannose binding./Fimbrial protein.		CDS	mannose-specific adhesin FimH			gs-sh	0	0	
high-affinity gluconate transporter		gntT	D-fructuronate permease (TC 2.A.8.1.3)		CDS	Fructuronate transporter GntP			gs-sh	0	0	
mannonate dehydratase	4.2.1.8	uxuA	D-mannonate dehydratase (EC 4.2.1.8)	4.2.1.8	CDS	Mannonate dehydratase	4.2.1.8		base_tigr	base_ec	base_ec	
mannitol dehydrogenase Rossmann domain protein			fructuronate reductase (EC 1.1.1.57)	1.1.1.57	CDS	D-mannonate oxidoreductase	1.1.1.57		0	0	base_ec	
			hypothetical protein		CDS	FIG00638239: hypothetical protein			base_one HP	base_one miss	base_one HP	
bacterial regulatory s, gntR family protein			transcriptional regulator, GntR family		CDS	Uxu operon transcriptional regulator			gs-sh	map	orth	
conserved hypothetical protein			Protein of unknown function (DUF2686).		CDS	Uncharacterized protein YjiC			base_one HP	base_one HP	0	
HTH-type transcriptional regulator QseD		qseD	Transcriptional regulator		CDS	Putative transcriptional regulator LYSR-type			gs-sh	map	orth	
anti-adapter protein iraD		iraD	Uncharacterized protein conserved in bacteria		CDS	YjiD protein			gs-sh	orth	0	
beta-aspartyl peptidase	3.4.19.5	iadA	isoaspartyl dipeptidase. Metallo peptidase. MEROPS family M38	3.4.19.-	CDS	Isoaspartyl dipeptidase @ Asp-X dipeptidase	3.4.19.5		base_tigr	base_ec	map	
inner membrane protein yjiG		yjiG	Uncharacterized membrane protein		CDS	Putative membrane protein			gs-sh	orth	lit-s	
nucleoside recognition family protein			Uncharacterized protein conserved in bacteria		CDS	FIG00637915: hypothetical protein			0	0	lit-s	
conserved hypothetical protein						FIG00639355: hypothetical protein			base_one HP	base_one HP	base_one miss	
RNA 2'-phosphotransferase, Tpt1 / KptA family protein			RNA:NAD 2'-phosphotransferase	2.7.1.-	CDS	RNA:NAD 2'-phosphotransferase			gs-sh	map	base_lit-s	
major Facilitator Superfamily protein			Arabinose efflux permease		CDS	Putative transport protein			0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00637952: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF3343).		CDS	FIG00638136: hypothetical protein			base_one HP	base_one HP	lit-s	
putative CoA-substrate-specific enzyme activase domain protein			CoA-substrate-specific enzyme activase, putative		CDS	FIG00638665: hypothetical protein			base_tigr	0	0	
2-hydroxyglutaryl-CoA dehydratase, D-component family protein			Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB		CDS	FIG00638031: hypothetical protein			0	0	0	
conserved hypothetical protein			Predicted membrane protein		CDS	Putative inner membrane protein			base_one HP	base_one HP	0	
multidrug resistance protein mdtM		mdtM	Arabinose efflux permease		CDS	FIG00637933: hypothetical protein			gs-sh	0	0	
putative predicted protein						putatitve membrane protein			base_one miss	0	base_one miss	
conserved hypothetical family protein			conserved hypothetical protein (putative transposase or invertase)		CDS	hypothetical protein			base_tigr	base_one HP	base_one HP	
conserved hypothetical family protein			conserved hypothetical protein (putative transposase or invertase)		CDS	FIG00638024: Transposase ECs5301			base_tigr	0	0	
conserved hypothetical protein			transcriptional regulator, GntR family		CDS	"Transcriptional regulator, GntR family domain / Aspartate aminotransferase"	2.6.1.1		base_one HP	base_one HP	pfam-sh	
conserved hypothetical protein			Uncharacterized conserved small protein		CDS	FIG00641081: hypothetical protein			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
putative phosphoethanolamine transferase			hypothetical protein		CDS	helicase related protein			base_one HP	0	base_one HP	
mcrBC 5-methylcytosine restriction system component family protein			McrBC 5-methylcytosine restriction system component		CDS	enzyme; Degradation of DNA			lit-s	0	0	
5-methylcytosine-specific restriction enzyme B	3.1.21.-	mcrB	GTPase subunit of restriction endonuclease	3.1.21.-	CDS	enzyme; Degradation of DNA			gs-sh	0	0	
toxic protein symE	3.1.-.-	symE	Toxin SymE, type I toxin-antitoxin system.		CDS	FIG00638399: hypothetical protein			gs-sh	0	0	
type-1 restriction enzyme EcoKI specificity protein		hsdS	Restriction endonuclease S subunits	3.1.21.3	CDS	"Type I restriction-modification system, specificity subunit S"	3.1.21.3		gs-sh	map	base_ec	
type I restriction enzyme EcoKI M protein	2.1.1.72	hsdM	Type I restriction-modification system methyltransferase subunit	2.1.1.72	CDS	"Type I restriction-modification system, DNA-methyltransferase subunit M"	2.1.1.72		base_ec	base_ec	base_ec	
DEAD/DEAH box helicase family protein			Type I site-specific restriction-modification system, R (restriction) subunit and related helicases	3.1.21.3	CDS	"Type I restriction-modification system, restriction subunit R"	3.1.21.3		0	0	base_ec	
mrr restriction system protein		mrr	Restriction endonuclease		CDS	Mrr restriction system protein			gs-sh	lit-s	orth	
conserved hypothetical protein			Putative GTPases (G3E family)		CDS	"Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family"			base_one HP	base_one HP	0	
conserved hypothetical protein			Uncharacterized small protein		CDS	"COG2879, Hypothetical small protein yjiX"			base_one HP	base_one HP	gs-sh	
inner membrane protein YjiY		yjiY	Carbon starvation protein, predicted membrane protein		CDS	Carbon starvation protein A paralog			gs-sh	map	tf_idf	
methyl-accepting chemotaxis protein I		tsr	methyl-accepting chemotaxis sensory transducer with TarH sensor		CDS	Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)			gs-sh	tf_idf	map	
L-galactonate transporter		yjjL	Sugar phosphate permease		CDS	D-galactonate transporter			gs-sh	0	0	
bacterial regulatory s, gntR family protein			transcriptional regulator, GntR family		CDS	Regulator of L-galactonate catabolism YjjM			gs-sh	0	0	
zinc-binding dehydrogenase family protein			Threonine dehydrogenase and related Zn-dependent dehydrogenases		CDS	Sorbitol dehydrogenase	1.1.1.14		0	0	0	
sulfatase family protein			phosphatidylglycerol-membrane-oligosaccharide glycerophosphotransferase (EC 2.7.8.20)	2.7.8.20	CDS	Phosphoglycerol transferase I	2.7.8.20		0	0	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF2501).		CDS	Putative glycoprotein/receptor			base_one HP	base_one HP	0	
DNA replication protein dnaC		dnaC	replicative DNA helicase loader DnaC		CDS	DNA replication protein DnaC			gs-sh	lit-s	gs-sh	
primosomal protein 1		dnaT	hypothetical protein		CDS	Primosomal protein I			base_one HP	orth	base_one HP	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG001826: putative inner membrane protein			base_one HP	base_one HP	0	
inner membrane protein yjjP		yjjP	Uncharacterized conserved protein		CDS	FIG023911: putative membrane protein			gs-sh	0	0	
bacterial regulatory s, luxR family protein			Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	Putative regulator			gs-sh	0	0	
bacterial regulatory s, luxR family protein			Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	Transcriptional activator protein bglJ			gs-sh	gs-sh	gs-sh	
siderophore-iron reductase FhuF	1.-.-.-	fhuF	siderophore-iron reductase FhuF		CDS	Ferric reductase (1.6.99.14)			base_lit-s	0	0	
conserved hypothetical protein			Protein of unknown function (DUF1435).		CDS	FIG00638078: hypothetical protein			base_one HP	base_one HP	lit-s	
ribosomal RNA small subunit methyltransferase C	2.1.1.172	rsmC	16S rRNA m(2)G 1207 methyltransferase	2.1.1.172,2.1.1.52	CDS	Ribosomal RNA small subunit methyltransferase C	2.1.1.52		base_ec-d	base_ec-d	base_ec-d	
DNA polymerase III, psi subunit	2.7.7.7	holD	DNA polymerase III, psi subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III psi subunit	2.7.7.7		base_tigr	base_ec	base_ec	
ribosomal-protein-alanine acetyltransferase	2.3.1.128	rimI	[SSU ribosomal protein S18P]-alanine acetyltransferase (EC 2.3.1.128)	2.3.1.128	CDS	Ribosomal-protein-S18p-alanine acetyltransferase	2.3.1.-		base_tigr	gs-sh	map	
pyrimidine 5'-nucleotidase YjjG	3.1.3.5	yjjG	HAD superfamily (subfamily IA) hydrolase, TIGR02254	3.1.3.5	CDS	5'-nucleotidase YjjG	3.1.3.5		base_ec	base_ec	base_ec	
peptide chain release factor 3		prfC	bacterial peptide chain release factor 3 (bRF-3)		CDS	Peptide chain release factor 3			gs-sh	lit-s	tf_idf	
osmotically-inducible protein Y		osmY	Predicted periplasmic or secreted lipoprotein		CDS	Osmotically inducible protein OsmY			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Small integral membrane protein		CDS	Putative exported protein			base_one HP	base_one HP	0	
patatin-like phospholipase family protein			Predicted esterase of the alpha-beta hydrolase superfamily		CDS	FIG00638703: hypothetical protein			0	0	0	
conserved hypothetical protein			Mg-dependent DNase	3.1.21.-	CDS	Putative deoxyribonuclease YjjV			base_one HP	base_one HP	orth	
radical SAM superfamily protein			glycine radical enzyme activase, YjjW family		CDS	radical activating enzyme			0	0	0	
conserved hypothetical protein			glycine radical enzyme, YjjI family		CDS	FIG00638118: hypothetical protein			base_one HP	base_one HP	0	
conserved hypothetical protein						FIG00640229: hypothetical protein			base_one HP	base_one HP	base_one miss	
deoxyribose-phosphate aldolase	4.1.2.4	deoC	deoxyribose-phosphate aldolase	4.1.2.4	CDS	Deoxyribose-phosphate aldolase	4.1.2.4		base_lit-s	base_ec	base_ec	
thymidine phosphorylase	2.4.2.4	deoA	thymidine phosphorylase (EC 2.4.2.4)	2.4.2.4	CDS	Thymidine phosphorylase	2.4.2.4		base_ec	base_ec	base_ec	
phosphopentomutase	5.4.2.7	deoB	phosphopentomutase	5.4.2.7	CDS	Phosphopentomutase	5.4.2.7		base_lit-s	base_ec	base_ec	
purine nucleoside phosphorylase	2.4.2.1	deoD	purine-nucleoside phosphorylase (EC 2.4.2.1)	2.4.2.1	CDS	Purine nucleoside phosphorylase	2.4.2.1		base_tigr	base_ec	base_ec	
hipA-like N-terminal domain protein			HipA-like C-terminal domain./HipA-like N-terminal domain.		CDS	FIG00640556: hypothetical protein			gs-sh	0	0	
lipoate-protein ligase A	2.7.7.63	lplA	lipoate-protein ligase	2.7.7.63,6.-.-.-	CDS	Lipoate-protein ligase A			gs-sh	lit-s	orth	
bacterial virulence factor hemolysin family protein			Uncharacterized membrane protein affecting hemolysin expression		CDS	Lipoate-protein ligase A			0	0	0	
phosphoserine phosphatase SerB	3.1.3.3	serB	phosphoserine phosphatase (EC 3.1.3.3)	3.1.3.3	CDS	Phosphoserine phosphatase	3.1.3.3		base_ec	base_ec	base_ec	
DNA repair protein RadA		radA	DNA repair protein RadA		CDS	DNA repair protein RadA			base_lit-s	base_lit-s	base_lit-s	
trifunctional NAD biosynthesis/regulator protein NadR	2.7.1.22	nadR	Predicted ATPase/kinase involved in NAD metabolism		CDS	"NadR transcriptional regulator / Nicotinamide-nucleotide adenylyltransferase, NadR family / Ribosylnicotinamide kinase"	2.7.7.1, 2.7.1.22		gs-sh	base_ec-d	0	
putative transcriptional regulator			hypothetical protein		CDS	putative regulatory protein			base_one HP	0	base_one HP	
heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	ATP-binding cassette protein, ChvD family		CDS	"ABC transporter, ATP-binding protein"			gs-sh	gs-sh	map	
soluble lytic murein transglycosylase	4.2.2.n1	slt	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	3.2.1.-	CDS	Soluble lytic murein transglycosylase precursor	3.2.1.-		gs-sh	gs-sh	tf_idf	
trp operon repressor		trpR	Trp operon repressor		CDS	Transcriptional repressor protein TrpR			base_tigr	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Inosine/xanthosine triphosphatase	3.6.1.-		base_one HP	base_one HP	0	
right origin-binding protein		rob	transcriptional regulator, AraC family		CDS	Right origin-binding protein			gs-sh	lit-s	orth	
putative phosphoglycerate mutase gpmB			phosphoglycerate mutase (EC 5.4.2.1)	5.4.2.1	CDS	Phosphoglycerate mutase	5.4.2.1		gs-sh	gs-sh	base_ec	
creA family protein			Uncharacterized protein conserved in bacteria		CDS	Conserved uncharacterized protein CreA			gs-sh	lit-s	gs-sh	
transcriptional regulatory , C terminal family protein			Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	Two-component response regulator CreB			0	0	0	
sensor protein CreC	2.7.13.3	creC	Signal transduction histidine kinase	2.7.13.3	CDS	Two-component response regulator CreC			base_ec	0	0	
inner membrane protein CreD		creD	Inner membrane protein involved in colicin E2 resistance		CDS	Inner membrane protein CreD			gs-sh	lit-s	tf_idf	
transcriptional regulatory , C terminal family protein			Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	Aerobic respiration control protein arcA			0	0	gs-sh	
RNA methyltransferase, TrmH , group 1 family protein	2.1.1.-		rRNA methylase	2.1.1.-	CDS	"RNA methyltransferase, TrmH family, group 1"			base_tigr	lit-s	map	
